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Gene: Tsnaxip1 (translin-associated factor X interacting protein 1) Rattus norvegicus

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Symbol:

Tsnaxip1

Name:

translin-associated factor X interacting protein 1

RGD ID:

1565341

Description:

Predicted to be active in cytoplasm. Orthologous to human TSNAXIP1 (translin associated factor X interacting protein 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acetamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC498944; RGD1565341; similar to translin-associated factor X (Tsnax) interacting protein 1; translin-associated factor X (Tsnax) interacting protein 1; translin-associated factor X-interacting protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	50,626,846 - 50,647,848 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	50,626,920 - 50,644,688 (+)	Ensembl				GRCr8
mRatBN7.2	19	33,716,834 - 33,734,824 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	33,716,785 - 33,734,824 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	40,532,598 - 40,550,366 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	41,185,919 - 41,203,687 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	43,483,862 - 43,501,988 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	37,795,432 - 37,813,424 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	37,795,658 - 37,813,424 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	48,662,195 - 48,680,195 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	35,662,072 - 35,680,154 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	33,144,808 - 33,162,486 (+)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

prostate cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (ISO)

amitrole (EXP)

antirheumatic drug (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chloroprene (ISO)

copper(II) sulfate (ISO)

Cuprizon (EXP)

epoxiconazole (ISO)

iron dichloride (ISO)

okadaic acid (ISO)

ozone (ISO)

paracetamol (ISO)

rotenone (ISO)

sodium arsenite (ISO)

sotorasib (ISO)

sulfadimethoxine (EXP)

Tetrachlorobisphenol A (ISO)

titanium dioxide (ISO)

trametinib (ISO)

trichloroethene (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytoplasm (IBA,IEA,ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12036294	PMID:16778019

Genomics

Comparative Map Data

Tsnaxip1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	50,626,846 - 50,647,848 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	50,626,920 - 50,644,688 (+)	Ensembl				GRCr8
mRatBN7.2	19	33,716,834 - 33,734,824 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	33,716,785 - 33,734,824 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	40,532,598 - 40,550,366 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	41,185,919 - 41,203,687 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	43,483,862 - 43,501,988 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	37,795,432 - 37,813,424 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	37,795,658 - 37,813,424 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	48,662,195 - 48,680,195 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	35,662,072 - 35,680,154 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	33,144,808 - 33,162,486 (+)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

TSNAXIP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	67,806,889 - 67,828,068 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	67,806,765 - 67,832,148 (+)	Ensembl			hg38	GRCh38
GRCh37	16	67,840,792 - 67,861,971 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	66,398,511 - 66,419,472 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	16	66,398,477 - 66,419,466	NCBI
Celera	16	52,349,445 - 52,370,387 (+)	NCBI		Celera
Cytogenetic Map	16	q22.1	NCBI
HuRef	16	53,713,327 - 53,734,921 (+)	NCBI		HuRef
CHM1_1	16	69,249,177 - 69,270,177 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	73,601,912 - 73,623,850 (+)	NCBI		T2T-CHM13v2.0

Tsnaxip1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	106,554,343 - 106,571,310 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	106,554,363 - 106,571,312 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	105,827,711 - 105,844,678 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	105,827,731 - 105,844,680 (+)	Ensembl			mm10	GRCm38
MGSCv37	8	108,351,644 - 108,368,576 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	108,716,873 - 108,733,805 (+)	NCBI		MGSCv36	mm8
Celera	8	110,055,420 - 110,072,451 (+)	NCBI		Celera
Cytogenetic Map	8	D3	NCBI
cM Map	8	53.04	NCBI

Tsnaxip1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955484	8,864,786 - 8,888,983 (-)	Ensembl
ChiLan1.0	NW_004955484	8,868,022 - 8,889,089 (-)	NCBI	ChiLan1.0	ChiLan1.0

TSNAXIP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	77,333,453 - 77,355,094 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	83,244,912 - 83,266,539 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	48,148,228 - 48,169,803 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	67,536,968 - 67,557,572 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	67,537,081 - 67,557,572 (+)	Ensembl			panPan2	panpan1.1

TSNAXIP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	81,647,135 - 81,662,106 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	81,647,141 - 81,661,562 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	81,636,748 - 81,651,900 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	82,082,159 - 82,097,258 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	82,082,255 - 82,096,914 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	81,908,580 - 81,923,671 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	81,590,164 - 81,605,252 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	82,232,654 - 82,247,746 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Tsnaxip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	41,390,574 - 41,403,313 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	18,192,796 - 18,198,470 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	18,192,765 - 18,198,494 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TSNAXIP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	28,428,917 - 28,450,563 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	28,428,531 - 28,453,743 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	25,682,771 - 25,704,318 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TSNAXIP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	59,611,229 - 59,631,212 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	59,609,692 - 59,630,985 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666047	22,338,179 - 22,359,119 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tsnaxip1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	18,535,133 - 18,558,094 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624746	18,538,528 - 18,558,518 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Tsnaxip1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	17	25,568,138 - 25,581,074 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Tsnaxip1
107 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	186
Count of miRNA genes:	151
Interacting mature miRNAs:	163
Transcripts:	ENSRNOT00000025686
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61447	Tcas1	Tongue tumor susceptibility QTL 1	6.08		tongue integrity trait (VT:0010553)	squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)	19	19220689	64220689	Rat
9590298	Uminl5	Urine mineral level QTL 5	3.59	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	19	7997750	52997750	Rat
724546	Kidm3	Kidney mass QTL 3	3.1		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	19	46226778	74246245	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	36289	74246245	Rat
2313395	Anxrr26	Anxiety related response QTL 26			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	19	44385134	74246245	Rat
1578764	Stresp19	Stress response QTL 19	3.6	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	19	32539615	74246245	Rat
1558656	Prcs1	Prostate cancer susceptibility QTL 1	5		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	19	31287532	51431640	Rat
1331788	Rf45	Renal function QTL 45	2.818		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	19	31777888	74246245	Rat
9590090	Insglur8	Insulin/glucose ratio QTL 8	10.81	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	19	7997750	52997750	Rat
1554318	Bmd5	Bone mineral density QTL 5	12.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	19	23188586	68188586	Rat
1549835	Tcas7	Tongue tumor susceptibility QTL 7		0.001	tongue integrity trait (VT:0010553)	squamous cell carcinoma of the head and neck tumor number (CMO:0001876)	19	41722546	74246245	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2194317	74246245	Rat
1354633	Bw28	Body weight QTL 28	6.04		body mass (VT:0001259)	body weight (CMO:0000012)	19	40727092	54856850	Rat
8552935	Pigfal10	Plasma insulin-like growth factor 1 level QTL 10	5.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	19	7997750	52997750	Rat
631840	Niddm38	Non-insulin dependent diabetes mellitus QTL 38	3.86		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	19	10329076	74246245	Rat
1358200	Insglur2	Insulin/glucose ratio QTL 2	4.1		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	19	5748064	50748064	Rat
7411549	Bw130	Body weight QTL 130	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	32365311	74246245	Rat
724518	Uae19	Urinary albumin excretion QTL 19	5.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	24093973	69093973	Rat
2303628	Vencon9	Ventilatory control QTL 9		0.005	respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	19	23188586	68188586	Rat
61423	Cia14	Collagen induced arthritis QTL 14	3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	19	10833618	74246245	Rat
9590250	Scort11	Serum corticosterone level QTL 11	23.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	19	7997750	52997750	Rat
1354607	Gmadr1	Adrenal mass QTL 1	5.83		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	19	40727092	54856850	Rat
2317848	Alcrsp21	Alcohol response QTL 21	1.899999976158142	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	19	20109306	65109306	Rat
1354600	Salc2	Saline consumption QTL 2	9.91	0.001	drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	19	40727092	54856850	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2194317	74246245	Rat

Markers in Region

BF394231

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	33,722,640 - 33,722,733 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	37,801,253 - 37,801,345	NCBI	Rnor6.0
Rnor_5.0	19	48,667,790 - 48,667,882	UniSTS	Rnor5.0
RGSC_v3.4	19	35,667,667 - 35,667,759	UniSTS	RGSC3.4
Celera	19	33,150,403 - 33,150,495	UniSTS
Cytogenetic Map	19	q12	UniSTS

AU046442

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	33,722,239 - 33,722,356 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	37,800,850 - 37,800,968	NCBI	Rnor6.0
Rnor_5.0	19	48,667,387 - 48,667,505	UniSTS	Rnor5.0
RGSC_v3.4	19	35,667,264 - 35,667,382	UniSTS	RGSC3.4
Celera	19	33,150,000 - 33,150,118	UniSTS
Cytogenetic Map	19	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
14	5	28	141	58	60	31	30	31	6	198	81	5	128	69	77	29	12	12

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109130	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255527	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255529	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601344	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601345	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601346	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097921	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097922	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097925	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097926	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278192	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278193	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC106288	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ750430	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000025686 ⟹ ENSRNOP00000025686

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	50,626,920 - 50,644,688 (+)	Ensembl
mRatBN7.2 Ensembl	19	33,716,785 - 33,734,824 (+)	Ensembl
Rnor_6.0 Ensembl	19	37,795,658 - 37,813,424 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095792 ⟹ ENSRNOP00000085050

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	50,626,920 - 50,644,294 (+)	Ensembl
mRatBN7.2 Ensembl	19	33,717,047 - 33,734,430 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000116830 ⟹ ENSRNOP00000089205

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	50,635,291 - 50,644,688 (+)	Ensembl
mRatBN7.2 Ensembl	19	33,716,871 - 33,734,824 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000152533 ⟹ ENSRNOP00000112312

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	50,626,942 - 50,644,359 (+)	Ensembl

RefSeq Acc Id:

NM_001109130 ⟹ NP_001102600

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	50,626,920 - 50,644,688 (+)	NCBI
mRatBN7.2	19	33,717,047 - 33,734,824 (+)	NCBI
Rnor_6.0	19	37,795,658 - 37,813,424 (+)	NCBI
Rnor_5.0	19	48,662,195 - 48,680,195 (+)	NCBI
RGSC_v3.4	19	35,662,072 - 35,680,154 (+)	RGD
Celera	19	33,144,808 - 33,162,486 (+)	RGD

Sequence:

show sequence

AGGCCGCTGGGGGCTGGTCCCCATGGCAACGGACTGTACACTACCGCAACGGCTCTAGCCTGCT
TCTGCTCCAGAGTCATGGCCAACCCCCAGACGCGTAACCAGAGTTTCTCCAAGCTAAGAACACG
CACACAATCTTCAGGAGGGACTCCGGAAGCAGAGAGCATTGAGAAACGCAAGCTTTCCCAGAAG
CGAAGGACACTGCCCTTGCAGTTATCCATGTGTGGCCACCTGTCACCATGGCCTACATACACCA
GTGGCCAGACGATTCTACATAAACGAAAGCCCTGTTCAGATGACAGCCGGAATCGAGCCAATAG
CTGGCAGCAGCAGCCCCTGAGCATCTCCAAGCCCAGGTACCTGGAGCAACTAGAGAATTACCTG
CGCAAGGAACTCCTGCTGCTGGACCTGAGCACGGATTCTGCACAAGAACTGAGGCTGCAGCCTT
ATAGGGAGATCTTTGAGTTCTTCATAGAGGATTTCAAGACATACAAGCCATTGTTATCCTCCAT
CAAGAATGCGTATGAGGTGATGCTGGCCCACCAAAGAGAGAAAATCCGGTCCCTAGAGCCCCTG
AAGGCCAAGATTGTCACTGTGAACGAGGACTGCAGTGAGAGAGTTCTGGCCATGAGGGCTGAGG
AGAGGCATGAAATCTCTGTGCTCAAGAAAGAGAAGATGAATTTGCTAAAACTCATTGATAAAAA
GAATGAAGAGAAGATCTCACTGCAGTGTGAGGTGGCTAAACTGAGGAAGAGCCTGGCTGAGGAG
TACTTGCGTTACCTTACCGAACGAGATGCCCGAAAGATTCTCATCGGGGACCTGAATGAACTGA
GGTACCAGCGAGAAGACATGTCACTAGCCCAGAGCCCAGGCGTTTGGGGAGAAGACCCTGTGAA
GCTAACTCTGGCACTGAAGATGACTCGACAAGACCTGACTCGCACGCAGATGGAACTTAACACA
ATGAAAGCCAACTTTGGAGATGTGGTGCCCAGGAGAGACTTCGAAATGCAAGAGAAGACCAACA
TGGAGCTTCAAGAGCAGCTAGAAAGCCTGAGAGGCGACTATGAAGAAGTCCGGAAGGAGCATGA
GATGCTGCTGCAGTTGCACATGAGCACACTAAAGGAGCGGGACCAGTTCTATAATGAGCTGCAG
GAGATCCAGCGCACCTCTACACCGCGGCCTGACTGGACCAAATGCGAAAGTGTCATAGCAGGGG
GCCAGGAACGCTGGCTAGTGCTGGCTGAAGGGAAGAACAGTGACCAGCTGGTGGATGTGCTCCT
GGAGGAAATTGGCATGGGTCTGCTTCGGGAGAAGGACTTCTTCCCTGGCCTGGGCTTTGGGGAT
TCCATCCCTCCATTCCTTCGGTTTGATGGCCCTGTGAAGAACAAGAAGCCCAGCAAAAAGGAGG
TGGTAAATCTCCTTAAGGATGCCTGGAAGGAGCGTGTTGCAGAGGAGCAGAAAGAGTCATTTCC
AGATTTCTTCTTCAATTTTCTGGAGCGTCGCTTTGGGGTCAATGAAGCCATGGCCTGGGCTTAT
ACCATTTTTGAAAATATCAAGCTCTTTCGTTCCAGTGAGATCATGAGTCAGTTCTATGCAGTTT
TGATGGGAAAGACTTTGGAGAGTGTATATATCAACCAAAAAGACACACTGTTCCACCTGCTGAA
GGAGCTGATAAATGCTGACACTCAGAATGAGGGGTCAATAACCATGGAACAATTCAGCACCGTC
CTCAAAACTACCTTTCCTCTCAAGAAGGAAGAGCAGATTATGGAGTTGATGGAGGCAGCAGGCT
GGGGTCCAGACAGCAGCAACACAGACATGTTAAACTATCGATCATTGTTTACTGAGGATGAGGA
AGGCCAGAGTGAGCCATTTGTGCAAAAGCTGTGGGAACAGTATAACAGTGAGAAGGAAGCTTAC
TTAGAAGAACTGAAGCAGGAGCTAAACATGGAACCTCTTGAAGAGGTGACCCTACTGAAGATGC
GTGGGACACTGATGAACATTGATCCCACCATGGACAGGCAGACTCTGAGTGCCTACCTGAGCCA
GGCCTATCAGATCCCTGCAATTGATGTTCCACTGGATGATGAAGAGAGGCAGGGGATAATTTCC
GTAACGCTTGAGACTGCACTTGATCGACTTAAGATGGCAGACACGAAGCGTGTAGGACCTCGAG
AGCCAGAGCAAGCAAGCTAGAGCCTCCAAAGGCAACAGAAATACTCCAATGTTGCTAACCTTCT
TCTAGTATAAAATTCTTTATTTAAATTCATACTATTTTTCAGGCTGGGGGAAGGTGATCTGGGC
AGGCCCTAAGACATGCACTAAAAAGCAGAACAACTAGGGGTTGGGGATTTAGCTCAGTGGTAGA
GCGCTTGCCCTGGGTTCGGTCCCCAGCTCCGAGAAAAAAAAAAAAAAAAAAGAACCAAAAAAAA
AAAAAAAGCAGAACGACTCATTTGTGAGAGTTTATTGGTGCTAGGAGATGAGGAACCTTGACAA
TTGTTTAGATGCCCAAGGTAGGGAGAGTAGGTGCCAGCTAAGGCCTGGTCCTACTGTGCAGGAA
AGACAGAATTGCCTCTGAATGCACAGGGGA

hide sequence

RefSeq Acc Id:

XM_006255527 ⟹ XP_006255589

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	50,626,846 - 50,647,848 (+)	NCBI
mRatBN7.2	19	33,716,834 - 33,734,674 (+)	NCBI
Rnor_6.0	19	37,795,432 - 37,813,220 (+)	NCBI
Rnor_5.0	19	48,662,195 - 48,680,195 (+)	NCBI

Sequence:

show sequence

CTGGCCAAGTGGCCAGACCTCGAAGCTTGCCTTTCTCGTCCATGGTCTCAGTTTATTCTCCTGC
CTCAGTTCTGTAGCTAATGTCAAATTTGCTGCACTGACTGGTTCTCAGAGCACCACATCTCTGG
GTCGGGGTCTACCTTTACTATTAGGACTTTCTCCAGAGTGCTCGCGGGGGCGGGGAGGATGGAG
GCGTGGCGCAACCGTGATCCCACCCTCAACGCGGAGGCCGCTGGGGGCTGGTCCCCATGGCAAC
GGACTGTACACTACCGCAACGGCTCTAGCCTGCTTCTGCTCCAGAGTCATGGCCAACCCCCAGA
CGCGTAACCAGAGTTTCTCCAAGCTAAGCCCTTGCAGTTATCCATGTGTGGCCACCTGTCACCA
TGGCCTACATACACCAGTGGCCAGACGATTCTACATAAACGAAAGCCCTGTTCAGATGACAGCC
GGAATCGAGCCAAACCAAGAGTACAAGGATCCATGGGTGCTAGTGACATCTCAGCCCACCATCC
TCTGCAGTAGCTGGCAGCAGCAGCCCCTGAGCATCTCCAAGCCCAGGTACCTGGAGCAACTAGA
GAATTACCTGCGCAAGGAACTCCTGCTGCTGGACCTGAGCACGGATTCTGCACAAGAACTGAGG
CTGCAGCCTTATAGGGAGATCTTTGAGTTCTTCATAGAGGATTTCAAGACATACAAGCCATTGT
TATCCTCCATCAAGAATGCGTATGAGGTGATGCTGGCCCACCAAAGAGAGAAAATCCGGTCCCT
AGAGCCCCTGAAGGCCAAGATTGTCACTGTGAACGAGGACTGCAGTGAGAGAGTTCTGGCCATG
AGGGCTGAGGAGAGGCATGAAATCTCTGTGCTCAAGAAAGAGAAGATGAATTTGCTAAAACTCA
TTGATAAAAAGAATGAAGAGAAGATCTCACTGCAGTGTGAGGTGGCTAAACTGAGGAAGAGCCT
GGCTGAGGAGTACTTGCGTTACCTTACCGAACGAGATGCCCGAAAGATTCTCATCGGGGACCTG
AATGAACTGAGGTACCAGCGAGAAGACATGTCACTAGCCCAGAGCCCAGGCGTTTGGGGAGAAG
ACCCTGTGAAGCTAACTCTGGCACTGAAGATGACTCGACAAGACCTGACTCGCACGCAGATGGA
ACTTAACACAATGAAAGCCAACTTTGGAGATGTGGTGCCCAGGAGAGACTTCGAAATGCAAGAG
AAGACCAACATGGAGCTTCAAGAGCAGCTAGAAAGCCTGAGAGGCGACTATGAAGAAGTCCGGA
AGGAGCATGAGATGCTGCTGCAGTTGCACATGAGCACACTAAAGGAGCGGGACCAGTTCTATAA
TGAGCTGCAGGAGATCCAGCGCACCTCTACACCGCGGCCTGACTGGACCAAATGCGAAAGTGTC
ATAGCAGGGGGCCAGGAACGCTGGCTAGTGCTGGCTGAAGGGAAGAACAGTGACCAGCTGGTGG
ATGTGCTCCTGGAGGAAATTGGCATGGGTCTGCTTCGGGAGAAGGACTTCTTCCCTGGCCTGGG
CTTTGGGGATTCCATCCCTCCATTCCTTCGGTTTGATGGCCCTGTGAAGAACAAGAAGCCCAGC
AAAAAGGAGGTGGTAAATCTCCTTAAGGATGCCTGGAAGGAGCGTGTTGCAGAGGAGCAGAAAG
AGTCATTTCCAGATTTCTTCTTCAATTTTCTGGAGCGTCGCTTTGGGGTCAATGAAGCCATGGC
CTGGGCTTATACCATTTTTGAAAATATCAAGCTCTTTCGTTCCAGTGAGATCATGAGTCAGTTC
TATGCAGTTTTGATGGGAAAGACTTTGGAGAGTGTATATATCAACCAAAAAGACACACTGTTCC
ACCTGCTGAAGGAGCTGATAAATGCTGACACTCAGAATGAGGGGTCAATAACCATGGAACAATT
CAGCACCGTCCTCAAAACTACCTTTCCTCTCAAGAAGGAAGAGCAGATTATGGAGTTGATGGAG
GCAGCAGGCTGGGGTCCAGACAGCAGCAACACAGACATGTTAAACTATCGATCATTGTTTACTG
AGGATGAGGAAGGCCAGAGTGAGCCATTTGTGCAAAAGCTGTGGGAACAGTATAACAGTGAGAA
GGAAGCTTACTTAGAAGAACTGAAGCAGGAGCTAAACATGGAACCTCTTGAAGAGGTGACCCTA
CTGAAGATGCGTGGGACACTGATGAACATTGATCCCACCATGGACAGGCAGACTCTGAGTGCCT
ACCTGAGCCAGGCCTATCAGATCCCTGCAATTGATGTTCCACTGGATGATGAAGAGAGGCAGGG
GATAATTTCCGTAACGCTTGAGACTGCACTTGATCGACTTAAGATGGCAGACACGAAGCGTGTA
GGACCTCGAGAGCCAGAGCAAGCAAGCTAGAGCCTCCAAAGGCAACAGAAATACTCCAATGTTG
CTAACCTTCTTCTAGTATAAAATTCTTTATTTAAATTCATACTATTTTTCAGGCTGGGGGAAGG
TGATCTGGGCAGGCCCTAAGACATGCACTAAAAAGCAGAACAACTAGGGGTTGGGGATTTAGCT
CAGTGGTAGAGCGCTTGCCCTGGGTTCG

hide sequence

RefSeq Acc Id:

XM_006255529 ⟹ XP_006255591

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	50,626,926 - 50,647,848 (+)	NCBI
mRatBN7.2	19	33,716,835 - 33,734,674 (+)	NCBI
Rnor_6.0	19	37,795,432 - 37,813,220 (+)	NCBI
Rnor_5.0	19	48,662,195 - 48,680,195 (+)	NCBI

Sequence:

show sequence

CTGGCCAAGTGGCCAGACCTCGAAGCTTGCCTTTCTCGTCCATGGTCTCAGTTTATTCTCCTGC
CTCAGTTCTGTAGCTAATGTCAAATTTGCTGCACTGACTGGTTCTCAGAGCACCACATCTCTGG
GTCGGGGTCTACCTTTACTATTAGGACTTTCTCCAGAGTGCTCGCGGGGGCGGGGAGGATGGAG
GCGTGGCGCAACCGTGATCCCACCCTCAACGCGGAGGCCGCTGGGGGCTGGTCCCCATGGCAAC
GGACTGTACACTACCGCAACGGCTCTAGCCTGCTTCTGCTCCAGAGTCATGGCCAACCCCCAGA
CGCGTAACCAGAGTTTCTCCAAGCTAAGCCCTTGCAGTTATCCATGTGTGGCCACCTGTCACCA
TGGCCTACATACACCAGTGGCCAGACGATTCTACATAAACGAAAGCCCTGTTCAGATGACAGCC
GGAATCGAGCCAATAGCTGGCAGCAGCAGCCCCTGAGCATCTCCAAGCCCAGGTACCTGGAGCA
ACTAGAGAATTACCTGCGCAAGGAACTCCTGCTGCTGGACCTGAGCACGGATTCTGCACAAGAA
CTGAGGCTGCAGCCTTATAGGGAGATCTTTGAGTTCTTCATAGAGGATTTCAAGACATACAAGC
CATTGTTATCCTCCATCAAGAATGCGTATGAGGTGATGCTGGCCCACCAAAGAGAGAAAATCCG
GTCCCTAGAGCCCCTGAAGGCCAAGATTGTCACTGTGAACGAGGACTGCAGTGAGAGAGTTCTG
GCCATGAGGGCTGAGGAGAGGCATGAAATCTCTGTGCTCAAGAAAGAGAAGATGAATTTGCTAA
AACTCATTGATAAAAAGAATGAAGAGAAGATCTCACTGCAGTGTGAGGTGGCTAAACTGAGGAA
GAGCCTGGCTGAGGAGTACTTGCGTTACCTTACCGAACGAGATGCCCGAAAGATTCTCATCGGG
GACCTGAATGAACTGAGGTACCAGCGAGAAGACATGTCACTAGCCCAGAGCCCAGGCGTTTGGG
GAGAAGACCCTGTGAAGCTAACTCTGGCACTGAAGATGACTCGACAAGACCTGACTCGCACGCA
GATGGAACTTAACACAATGAAAGCCAACTTTGGAGATGTGGTGCCCAGGAGAGACTTCGAAATG
CAAGAGAAGACCAACATGGAGCTTCAAGAGCAGCTAGAAAGCCTGAGAGGCGACTATGAAGAAG
TCCGGAAGGAGCATGAGATGCTGCTGCAGTTGCACATGAGCACACTAAAGGAGCGGGACCAGTT
CTATAATGAGCTGCAGGAGATCCAGCGCACCTCTACACCGCGGCCTGACTGGACCAAATGCGAA
AGTGTCATAGCAGGGGGCCAGGAACGCTGGCTAGTGCTGGCTGAAGGGAAGAACAGTGACCAGC
TGGTGGATGTGCTCCTGGAGGAAATTGGCATGGGTCTGCTTCGGGAGAAGGACTTCTTCCCTGG
CCTGGGCTTTGGGGATTCCATCCCTCCATTCCTTCGGTTTGATGGCCCTGTGAAGAACAAGAAG
CCCAGCAAAAAGGAGGTGGTAAATCTCCTTAAGGATGCCTGGAAGGAGCGTGTTGCAGAGGAGC
AGAAAGAGTCATTTCCAGATTTCTTCTTCAATTTTCTGGAGCGTCGCTTTGGGGTCAATGAAGC
CATGGCCTGGGCTTATACCATTTTTGAAAATATCAAGCTCTTTCGTTCCAGTGAGATCATGAGT
CAGTTCTATGCAGTTTTGATGGGAAAGACTTTGGAGAGTGTATATATCAACCAAAAAGACACAC
TGTTCCACCTGCTGAAGGAGCTGATAAATGCTGACACTCAGAATGAGGGGTCAATAACCATGGA
ACAATTCAGCACCGTCCTCAAAACTACCTTTCCTCTCAAGAAGGAAGAGCAGATTATGGAGTTG
ATGGAGGCAGCAGGCTGGGGTCCAGACAGCAGCAACACAGACATGTTAAACTATCGATCATTGT
TTACTGAGGATGAGGAAGGCCAGAGTGAGCCATTTGTGCAAAAGCTGTGGGAACAGTATAACAG
TGAGAAGGAAGCTTACTTAGAAGAACTGAAGCAGGAGCTAAACATGGAACCTCTTGAAGAGGTG
ACCCTACTGAAGATGCGTGGGACACTGATGAACATTGATCCCACCATGGACAGGCAGACTCTGA
GTGCCTACCTGAGCCAGGCCTATCAGATCCCTGCAATTGATGTTCCACTGGATGATGAAGAGAG
GCAGGGGATAATTTCCGTAACGCTTGAGACTGCACTTGATCGACTTAAGATGGCAGACACGAAG
CGTGTAGGACCTCGAGAGCCAGAGCAAGCAAGCTAGAGCCTCCAAAGGCAACAGAAATACTCCA
ATGTTGCTAACCTTCTTCTAGTATAAAATTCTTTATTTAAATTCATACTATTTTTCAGGCTGGG
GGAAGGTGATCTGGGCAGGCCCTAAGACATGCACTAAAAAGCAGAACAACTAGGGGTTGGGGAT
TTAGCTCAGTGGTAGAGCGCTTGCCCTGGGTTCG

hide sequence

RefSeq Acc Id:

XM_017601344 ⟹ XP_017456833

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	50,635,127 - 50,647,848 (+)	NCBI
mRatBN7.2	19	33,725,442 - 33,734,674 (+)	NCBI
Rnor_6.0	19	37,804,105 - 37,813,220 (+)	NCBI

Sequence:

show sequence

TGTACTCACATACATAGAATAAATGTTTTCAGATGGTCTCATGTAGCCCAACCTGGCCTCAAAC
TGTCTGTGACGCTAAGGATCCTCTTGAACTCCAAGCCTCCACCCTTCGTGTGCTCAGATGCAGC
CCTTGCAGTTATCCATGTGTGGCCACCTGTCACCATGGCCTACATACACCAGTGGCCAGACGAT
TCTACATAAACGAAAGCCCTGTTCAGATGACAGCCGGAATCGAGCCAATAGCTGGCAGCAGCAG
CCCCTGAGCATCTCCAAGCCCAGGTACCTGGAGCAACTAGAGAATTACCTGCGCAAGGAACTCC
TGCTGCTGGACCTGAGCACGGATTCTGCACAAGAACTGAGGCTGCAGCCTTATAGGGAGATCTT
TGAGTTCTTCATAGAGGATTTCAAGACATACAAGCCATTGTTATCCTCCATCAAGAATGCGTAT
GAGGTGATGCTGGCCCACCAAAGAGAGAAAATCCGGTCCCTAGAGCCCCTGAAGGCCAAGATTG
TCACTGTGAACGAGGACTGCAGTGAGAGAGTTCTGGCCATGAGGGCTGAGGAGAGGCATGAAAT
CTCTGTGCTCAAGAAAGAGAAGATGAATTTGCTAAAACTCATTGATAAAAAGAATGAAGAGAAG
ATCTCACTGCAGTGTGAGGTGGCTAAACTGAGGAAGAGCCTGGCTGAGGAGTACTTGCGTTACC
TTACCGAACGAGATGCCCGAAAGATTCTCATCGGGGACCTGAATGAACTGAGGTACCAGCGAGA
AGACATGTCACTAGCCCAGAGCCCAGGCGTTTGGGGAGAAGACCCTGTGAAGCTAACTCTGGCA
CTGAAGATGACTCGACAAGACCTGACTCGCACGCAGATGGAACTTAACACAATGAAAGCCAACT
TTGGAGATGTGGTGCCCAGGAGAGACTTCGAAATGCAAGAGAAGACCAACATGGAGCTTCAAGA
GCAGCTAGAAAGCCTGAGAGGCGACTATGAAGAAGTCCGGAAGGAGCATGAGATGCTGCTGCAG
TTGCACATGAGCACACTAAAGGAGCGGGACCAGTTCTATAATGAGCTGCAGGAGATCCAGCGCA
CCTCTACACCGCGGCCTGACTGGACCAAATGCGAAAGTGTCATAGCAGGGGGCCAGGAACGCTG
GCTAGTGCTGGCTGAAGGGAAGAACAGTGACCAGCTGGTGGATGTGCTCCTGGAGGAAATTGGC
ATGGGTCTGCTTCGGGAGAAGGACTTCTTCCCTGGCCTGGGCTTTGGGGATTCCATCCCTCCAT
TCCTTCGGTTTGATGGCCCTGTGAAGAACAAGAAGCCCAGCAAAAAGGAGGTGGTAAATCTCCT
TAAGGATGCCTGGAAGGAGCGTGTTGCAGAGGAGCAGAAAGAGTCATTTCCAGATTTCTTCTTC
AATTTTCTGGAGCGTCGCTTTGGGGTCAATGAAGCCATGGCCTGGGCTTATACCATTTTTGAAA
ATATCAAGCTCTTTCGTTCCAGTGAGATCATGAGTCAGTTCTATGCAGTTTTGATGGGAAAGAC
TTTGGAGAGTGTATATATCAACCAAAAAGACACACTGTTCCACCTGCTGAAGGAGCTGATAAAT
GCTGACACTCAGAATGAGGGGTCAATAACCATGGAACAATTCAGCACCGTCCTCAAAACTACCT
TTCCTCTCAAGAAGGAAGAGCAGATTATGGAGTTGATGGAGGCAGCAGGCTGGGGTCCAGACAG
CAGCAACACAGACATGTTAAACTATCGATCATTGTTTACTGAGGATGAGGAAGGCCAGAGTGAG
CCATTTGTGCAAAAGCTGTGGGAACAGTATAACAGTGAGAAGGAAGCTTACTTAGAAGAACTGA
AGCAGGAGCTAAACATGGAACCTCTTGAAGAGGTGACCCTACTGAAGATGCGTGGGACACTGAT
GAACATTGATCCCACCATGGACAGGCAGACTCTGAGTGCCTACCTGAGCCAGGCCTATCAGATC
CCTGCAATTGATGTTCCACTGGATGATGAAGAGAGGCAGGGGATAATTTCCGTAACGCTTGAGA
CTGCACTTGATCGACTTAAGATGGCAGACACGAAGCGTGTAGGACCTCGAGAGCCAGAGCAAGC
AAGCTAGAGCCTCCAAAGGCAACAGAAATACTCCAATGTTGCTAACCTTCTTCTAGTATAAAAT
TCTTTATTTAAATTCATACTATTTTTCAGGCTGGGGGAAGGTGATCTGGGCAGGCCCTAAGACA
TGCACTAAAAAGCAGAACAACTAGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCCTGG
GTTCG

hide sequence

RefSeq Acc Id:

XM_017601345 ⟹ XP_017456834

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	50,638,793 - 50,647,848 (+)	NCBI
mRatBN7.2	19	33,728,927 - 33,734,674 (+)	NCBI
Rnor_6.0	19	37,807,554 - 37,813,220 (+)	NCBI

Sequence:

show sequence

CATAGAGGATTTCAAGACATACAAGCCATTGTTATCCTCCATCAAGAATGCGTATGAGGTGATG
CTGGGGTCTTTCTATGTATTCCTGGCTGTTCTGGAGCTTGCTTTGTAAGACAGACTGGCCTTCA
ATTCAGAGATCTGCCTCCTCTCTGCGGTGCTAGGATTAAAGACATGCACTACCATACCCAACCC
ACCTATCTTTGCTTAGCCCACCAAAGAGAGAAAATCCGGTCCCTAGAGCCCCTGAAGGCCAAGA
TTGTCACTGTGAACGAGGACTGCAGTGAGAGAGTTCTGGCCATGAGGGCTGAGGAGAGGCATGA
AATCTCTGTGCTCAAGAAAGAGAAGATGAATTTGCTAAAACTCATTGATAAAAAGAATGAAGAG
AAGATCTCACTGCAGTGTGAGGTGGCTAAACTGAGGAAGAGCCTGGCTGAGGAGTACTTGCGTT
ACCTTACCGAACGAGATGCCCGAAAGATTCTCATCGGGGACCTGAATGAACTGAGGTACCAGCG
AGAAGACATGTCACTAGCCCAGAGCCCAGGCGTTTGGGGAGAAGACCCTGTGAAGCTAACTCTG
GCACTGAAGATGACTCGACAAGACCTGACTCGCACGCAGATGGAACTTAACACAATGAAAGCCA
ACTTTGGAGATGTGGTGCCCAGGAGAGACTTCGAAATGCAAGAGAAGACCAACATGGAGCTTCA
AGAGCAGCTAGAAAGCCTGAGAGGCGACTATGAAGAAGTCCGGAAGGAGCATGAGATGCTGCTG
CAGTTGCACATGAGCACACTAAAGGAGCGGGACCAGTTCTATAATGAGCTGCAGGAGATCCAGC
GCACCTCTACACCGCGGCCTGACTGGACCAAATGCGAAAGTGTCATAGCAGGGGGCCAGGAACG
CTGGCTAGTGCTGGCTGAAGGGAAGAACAGTGACCAGCTGGTGGATGTGCTCCTGGAGGAAATT
GGCATGGGTCTGCTTCGGGAGAAGGACTTCTTCCCTGGCCTGGGCTTTGGGGATTCCATCCCTC
CATTCCTTCGGTTTGATGGCCCTGTGAAGAACAAGAAGCCCAGCAAAAAGGAGGTGGTAAATCT
CCTTAAGGATGCCTGGAAGGAGCGTGTTGCAGAGGAGCAGAAAGAGTCATTTCCAGATTTCTTC
TTCAATTTTCTGGAGCGTCGCTTTGGGGTCAATGAAGCCATGGCCTGGGCTTATACCATTTTTG
AAAATATCAAGCTCTTTCGTTCCAGTGAGATCATGAGTCAGTTCTATGCAGTTTTGATGGGAAA
GACTTTGGAGAGTGTATATATCAACCAAAAAGACACACTGTTCCACCTGCTGAAGGAGCTGATA
AATGCTGACACTCAGAATGAGGGGTCAATAACCATGGAACAATTCAGCACCGTCCTCAAAACTA
CCTTTCCTCTCAAGAAGGAAGAGCAGATTATGGAGTTGATGGAGGCAGCAGGCTGGGGTCCAGA
CAGCAGCAACACAGACATGTTAAACTATCGATCATTGTTTACTGAGGATGAGGAAGGCCAGAGT
GAGCCATTTGTGCAAAAGCTGTGGGAACAGTATAACAGTGAGAAGGAAGCTTACTTAGAAGAAC
TGAAGCAGGAGCTAAACATGGAACCTCTTGAAGAGGTGACCCTACTGAAGATGCGTGGGACACT
GATGAACATTGATCCCACCATGGACAGGCAGACTCTGAGTGCCTACCTGAGCCAGGCCTATCAG
ATCCCTGCAATTGATGTTCCACTGGATGATGAAGAGAGGCAGGGGATAATTTCCGTAACGCTTG
AGACTGCACTTGATCGACTTAAGATGGCAGACACGAAGCGTGTAGGACCTCGAGAGCCAGAGCA
AGCAAGCTAGAGCCTCCAAAGGCAACAGAAATACTCCAATGTTGCTAACCTTCTTCTAGTATAA
AATTCTTTATTTAAATTCATACTATTTTTCAGGCTGGGGGAAGGTGATCTGGGCAGGCCCTAAG
ACATGCACTAAAAAGCAGAACAACTAGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCC
TGGGTTCG

hide sequence

RefSeq Acc Id:

XM_017601346 ⟹ XP_017456835

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	50,626,846 - 50,647,848 (+)	NCBI
mRatBN7.2	19	33,716,835 - 33,734,674 (+)	NCBI
Rnor_6.0	19	37,795,432 - 37,813,220 (+)	NCBI

Sequence:

show sequence

CTGGCCAAGTGGCCAGACCTCGAAGCTTGCCTTTCTCGTCCATGGTCTCAGTTTATTCTCCTGC
CTCAGTTCTGTAGCTAATGTCAAATTTGCTGCACTGACTGGTTCTCAGAGCACCACATCTCTGG
GTCGGGGTCTACCTTTACTATTAGGACTTTCTCCAGAGTGCTCGCGGGGGCGGGGAGGATGGAG
GCGTGGCGCAACCGTGATCCCACCCTCAACGCGGAGGCCGCTGGGGGCTGGTCCCCATGGCAAC
GGACTGTACACTACCGCAACGGCTCTAGCCTGCTTCTGCTCCAGAGTCATGGCCAACCCCCAGA
CGCGTAACCAGAGTTTCTCCAAGCTAAGAACACGCACACAATCTTCAGGAGGGACTCCGGAAGC
AGAGAGCATTGAGAAACGCAAGCTTTCCCAGAAGCGAAGGACACTGGTGGCTAAACTGAGGAAG
AGCCTGGCTGAGGAGTACTTGCGTTACCTTACCGAACGAGATGCCCGAAAGATTCTCATCGGGG
ACCTGAATGAACTGAGGTACCAGCGAGAAGACATGTCACTAGCCCAGAGCCCAGGCGTTTGGGG
AGAAGACCCTGTGAAGCTAACTCTGGCACTGAAGATGACTCGACAAGACCTGACTCGCACGCAG
ATGGAACTTAACACAATGAAAGCCAACTTTGGAGATGTGGTGCCCAGGAGAGACTTCGAAATGC
AAGAGAAGACCAACATGGAGCTTCAAGAGCAGCTAGAAAGCCTGAGAGGCGACTATGAAGAAGT
CCGGAAGGAGCATGAGATGCTGCTGCAGTTGCACATGAGCACACTAAAGGAGCGGGACCAGTTC
TATAATGAGCTGCAGGAGATCCAGCGCACCTCTACACCGCGGCCTGACTGGACCAAATGCGAAA
GTGTCATAGCAGGGGGCCAGGAACGCTGGCTAGTGCTGGCTGAAGGGAAGAACAGTGACCAGCT
GGTGGATGTGCTCCTGGAGGAAATTGGCATGGGTCTGCTTCGGGAGAAGGACTTCTTCCCTGGC
CTGGGCTTTGGGGATTCCATCCCTCCATTCCTTCGGTTTGATGGCCCTGTGAAGAACAAGAAGC
CCAGCAAAAAGGAGGTGGTAAATCTCCTTAAGGATGCCTGGAAGGAGCGTGTTGCAGAGGAGCA
GAAAGAGTCATTTCCAGATTTCTTCTTCAATTTTCTGGAGCGTCGCTTTGGGGTCAATGAAGCC
ATGGCCTGGGCTTATACCATTTTTGAAAATATCAAGCTCTTTCGTTCCAGTGAGATCATGAGTC
AGTTCTATGCAGTTTTGATGGGAAAGACTTTGGAGAGTGTATATATCAACCAAAAAGACACACT
GTTCCACCTGCTGAAGGAGCTGATAAATGCTGACACTCAGAATGAGGGGTCAATAACCATGGAA
CAATTCAGCACCGTCCTCAAAACTACCTTTCCTCTCAAGAAGGAAGAGCAGATTATGGAGTTGA
TGGAGGCAGCAGGCTGGGGTCCAGACAGCAGCAACACAGACATGTTAAACTATCGATCATTGTT
TACTGAGGATGAGGAAGGCCAGAGTGAGCCATTTGTGCAAAAGCTGTGGGAACAGTATAACAGT
GAGAAGGAAGCTTACTTAGAAGAACTGAAGCAGGAGCTAAACATGGAACCTCTTGAAGAGGTGA
CCCTACTGAAGATGCGTGGGACACTGATGAACATTGATCCCACCATGGACAGGCAGACTCTGAG
TGCCTACCTGAGCCAGGCCTATCAGATCCCTGCAATTGATGTTCCACTGGATGATGAAGAGAGG
CAGGGGATAATTTCCGTAACGCTTGAGACTGCACTTGATCGACTTAAGATGGCAGACACGAAGC
GTGTAGGACCTCGAGAGCCAGAGCAAGCAAGCTAGAGCCTCCAAAGGCAACAGAAATACTCCAA
TGTTGCTAACCTTCTTCTAGTATAAAATTCTTTATTTAAATTCATACTATTTTTCAGGCTGGGG
GAAGGTGATCTGGGCAGGCCCTAAGACATGCACTAAAAAGCAGAACAACTAGGGGTTGGGGATT
TAGCTCAGTGGTAGAGCGCTTGCCCTGGGTTCG

hide sequence

RefSeq Acc Id:

XM_039097921 ⟹ XP_038953849

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	50,626,954 - 50,647,848 (+)	NCBI
mRatBN7.2	19	33,716,834 - 33,734,674 (+)	NCBI

RefSeq Acc Id:

XM_039097922 ⟹ XP_038953850

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	50,634,480 - 50,644,367 (+)	NCBI
mRatBN7.2	19	33,724,608 - 33,734,674 (+)	NCBI

RefSeq Acc Id:

XM_039097925 ⟹ XP_038953853

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	50,632,376 - 50,647,848 (+)	NCBI
mRatBN7.2	19	33,722,502 - 33,734,674 (+)	NCBI

RefSeq Acc Id:

XM_039097926 ⟹ XP_038953854

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	50,637,232 - 50,647,848 (+)	NCBI
mRatBN7.2	19	33,727,378 - 33,734,674 (+)	NCBI

RefSeq Acc Id:

XM_063278192 ⟹ XP_063134262

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	50,632,345 - 50,647,848 (+)	NCBI

RefSeq Acc Id:

XM_063278193 ⟹ XP_063134263

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	50,632,364 - 50,644,367 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102600	(Get FASTA)	NCBI Sequence Viewer
	XP_006255589	(Get FASTA)	NCBI Sequence Viewer
	XP_006255591	(Get FASTA)	NCBI Sequence Viewer
	XP_017456833	(Get FASTA)	NCBI Sequence Viewer
	XP_017456834	(Get FASTA)	NCBI Sequence Viewer
	XP_017456835	(Get FASTA)	NCBI Sequence Viewer
	XP_038953849	(Get FASTA)	NCBI Sequence Viewer
	XP_038953850	(Get FASTA)	NCBI Sequence Viewer
	XP_038953853	(Get FASTA)	NCBI Sequence Viewer
	XP_038953854	(Get FASTA)	NCBI Sequence Viewer
	XP_063134262	(Get FASTA)	NCBI Sequence Viewer
	XP_063134263	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL92402	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000025686
	ENSRNOP00000025686.7
	ENSRNOP00000085050.1
	ENSRNOP00000089205
	ENSRNOP00000089205.1
	ENSRNOP00000112312
	ENSRNOP00000112312.1

RefSeq Acc Id:

NP_001102600 ⟸ NM_001109130

- UniProtKB:

A6IYS4 (UniProtKB/TrEMBL), A0A8I5ZYF3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MANPQTRNQSFSKLRTRTQSSGGTPEAESIEKRKLSQKRRTLPLQLSMCGHLSPWPTYTSGQTI
LHKRKPCSDDSRNRANSWQQQPLSISKPRYLEQLENYLRKELLLLDLSTDSAQELRLQPYREIF
EFFIEDFKTYKPLLSSIKNAYEVMLAHQREKIRSLEPLKAKIVTVNEDCSERVLAMRAEERHEI
SVLKKEKMNLLKLIDKKNEEKISLQCEVAKLRKSLAEEYLRYLTERDARKILIGDLNELRYQRE
DMSLAQSPGVWGEDPVKLTLALKMTRQDLTRTQMELNTMKANFGDVVPRRDFEMQEKTNMELQE
QLESLRGDYEEVRKEHEMLLQLHMSTLKERDQFYNELQEIQRTSTPRPDWTKCESVIAGGQERW
LVLAEGKNSDQLVDVLLEEIGMGLLREKDFFPGLGFGDSIPPFLRFDGPVKNKKPSKKEVVNLL
KDAWKERVAEEQKESFPDFFFNFLERRFGVNEAMAWAYTIFENIKLFRSSEIMSQFYAVLMGKT
LESVYINQKDTLFHLLKELINADTQNEGSITMEQFSTVLKTTFPLKKEEQIMELMEAAGWGPDS
SNTDMLNYRSLFTEDEEGQSEPFVQKLWEQYNSEKEAYLEELKQELNMEPLEEVTLLKMRGTLM
NIDPTMDRQTLSAYLSQAYQIPAIDVPLDDEERQGIISVTLETALDRLKMADTKRVGPREPEQA
S

hide sequence

RefSeq Acc Id:	XP_006255589 ⟸ XM_006255527
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5ZYF3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MANPQTRNQSFSKLSPCSYPCVATCHHGLHTPVARRFYINESPVQMTAGIEPNQEYKDPWVLVT SQPTILCSSWQQQPLSISKPRYLEQLENYLRKELLLLDLSTDSAQELRLQPYREIFEFFIEDFK TYKPLLSSIKNAYEVMLAHQREKIRSLEPLKAKIVTVNEDCSERVLAMRAEERHEISVLKKEKM NLLKLIDKKNEEKISLQCEVAKLRKSLAEEYLRYLTERDARKILIGDLNELRYQREDMSLAQSP GVWGEDPVKLTLALKMTRQDLTRTQMELNTMKANFGDVVPRRDFEMQEKTNMELQEQLESLRGD YEEVRKEHEMLLQLHMSTLKERDQFYNELQEIQRTSTPRPDWTKCESVIAGGQERWLVLAEGKN SDQLVDVLLEEIGMGLLREKDFFPGLGFGDSIPPFLRFDGPVKNKKPSKKEVVNLLKDAWKERV AEEQKESFPDFFFNFLERRFGVNEAMAWAYTIFENIKLFRSSEIMSQFYAVLMGKTLESVYINQ KDTLFHLLKELINADTQNEGSITMEQFSTVLKTTFPLKKEEQIMELMEAAGWGPDSSNTDMLNY RSLFTEDEEGQSEPFVQKLWEQYNSEKEAYLEELKQELNMEPLEEVTLLKMRGTLMNIDPTMDR QTLSAYLSQAYQIPAIDVPLDDEERQGIISVTLETALDRLKMADTKRVGPREPEQAS hide sequence

RefSeq Acc Id:	XP_006255591 ⟸ XM_006255529
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I5ZYF3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MCGHLSPWPTYTSGQTILHKRKPCSDDSRNRANSWQQQPLSISKPRYLEQLENYLRKELLLLDL STDSAQELRLQPYREIFEFFIEDFKTYKPLLSSIKNAYEVMLAHQREKIRSLEPLKAKIVTVNE DCSERVLAMRAEERHEISVLKKEKMNLLKLIDKKNEEKISLQCEVAKLRKSLAEEYLRYLTERD ARKILIGDLNELRYQREDMSLAQSPGVWGEDPVKLTLALKMTRQDLTRTQMELNTMKANFGDVV PRRDFEMQEKTNMELQEQLESLRGDYEEVRKEHEMLLQLHMSTLKERDQFYNELQEIQRTSTPR PDWTKCESVIAGGQERWLVLAEGKNSDQLVDVLLEEIGMGLLREKDFFPGLGFGDSIPPFLRFD GPVKNKKPSKKEVVNLLKDAWKERVAEEQKESFPDFFFNFLERRFGVNEAMAWAYTIFENIKLF RSSEIMSQFYAVLMGKTLESVYINQKDTLFHLLKELINADTQNEGSITMEQFSTVLKTTFPLKK EEQIMELMEAAGWGPDSSNTDMLNYRSLFTEDEEGQSEPFVQKLWEQYNSEKEAYLEELKQELN MEPLEEVTLLKMRGTLMNIDPTMDRQTLSAYLSQAYQIPAIDVPLDDEERQGIISVTLETALDR LKMADTKRVGPREPEQAS hide sequence

RefSeq Acc Id:

XP_017456835 ⟸ XM_017601346

- Peptide Label:

isoform X7

- Sequence:

show sequence

MANPQTRNQSFSKLRTRTQSSGGTPEAESIEKRKLSQKRRTLVAKLRKSLAEEYLRYLTERDAR
KILIGDLNELRYQREDMSLAQSPGVWGEDPVKLTLALKMTRQDLTRTQMELNTMKANFGDVVPR
RDFEMQEKTNMELQEQLESLRGDYEEVRKEHEMLLQLHMSTLKERDQFYNELQEIQRTSTPRPD
WTKCESVIAGGQERWLVLAEGKNSDQLVDVLLEEIGMGLLREKDFFPGLGFGDSIPPFLRFDGP
VKNKKPSKKEVVNLLKDAWKERVAEEQKESFPDFFFNFLERRFGVNEAMAWAYTIFENIKLFRS
SEIMSQFYAVLMGKTLESVYINQKDTLFHLLKELINADTQNEGSITMEQFSTVLKTTFPLKKEE
QIMELMEAAGWGPDSSNTDMLNYRSLFTEDEEGQSEPFVQKLWEQYNSEKEAYLEELKQELNME
PLEEVTLLKMRGTLMNIDPTMDRQTLSAYLSQAYQIPAIDVPLDDEERQGIISVTLETALDRLK
MADTKRVGPREPEQAS

hide sequence

RefSeq Acc Id:	XP_017456833 ⟸ XM_017601344
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6A9Q1 (UniProtKB/TrEMBL), A0A8I5ZYF3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQPLQLSMCGHLSPWPTYTSGQTILHKRKPCSDDSRNRANSWQQQPLSISKPRYLEQLENYLRK ELLLLDLSTDSAQELRLQPYREIFEFFIEDFKTYKPLLSSIKNAYEVMLAHQREKIRSLEPLKA KIVTVNEDCSERVLAMRAEERHEISVLKKEKMNLLKLIDKKNEEKISLQCEVAKLRKSLAEEYL RYLTERDARKILIGDLNELRYQREDMSLAQSPGVWGEDPVKLTLALKMTRQDLTRTQMELNTMK ANFGDVVPRRDFEMQEKTNMELQEQLESLRGDYEEVRKEHEMLLQLHMSTLKERDQFYNELQEI QRTSTPRPDWTKCESVIAGGQERWLVLAEGKNSDQLVDVLLEEIGMGLLREKDFFPGLGFGDSI PPFLRFDGPVKNKKPSKKEVVNLLKDAWKERVAEEQKESFPDFFFNFLERRFGVNEAMAWAYTI FENIKLFRSSEIMSQFYAVLMGKTLESVYINQKDTLFHLLKELINADTQNEGSITMEQFSTVLK TTFPLKKEEQIMELMEAAGWGPDSSNTDMLNYRSLFTEDEEGQSEPFVQKLWEQYNSEKEAYLE ELKQELNMEPLEEVTLLKMRGTLMNIDPTMDRQTLSAYLSQAYQIPAIDVPLDDEERQGIISVT LETALDRLKMADTKRVGPREPEQAS hide sequence

RefSeq Acc Id:

XP_017456834 ⟸ XM_017601345

- Peptide Label:

isoform X6

- Sequence:

show sequence

MHYHTQPTYLCLAHQREKIRSLEPLKAKIVTVNEDCSERVLAMRAEERHEISVLKKEKMNLLKL
IDKKNEEKISLQCEVAKLRKSLAEEYLRYLTERDARKILIGDLNELRYQREDMSLAQSPGVWGE
DPVKLTLALKMTRQDLTRTQMELNTMKANFGDVVPRRDFEMQEKTNMELQEQLESLRGDYEEVR
KEHEMLLQLHMSTLKERDQFYNELQEIQRTSTPRPDWTKCESVIAGGQERWLVLAEGKNSDQLV
DVLLEEIGMGLLREKDFFPGLGFGDSIPPFLRFDGPVKNKKPSKKEVVNLLKDAWKERVAEEQK
ESFPDFFFNFLERRFGVNEAMAWAYTIFENIKLFRSSEIMSQFYAVLMGKTLESVYINQKDTLF
HLLKELINADTQNEGSITMEQFSTVLKTTFPLKKEEQIMELMEAAGWGPDSSNTDMLNYRSLFT
EDEEGQSEPFVQKLWEQYNSEKEAYLEELKQELNMEPLEEVTLLKMRGTLMNIDPTMDRQTLSA
YLSQAYQIPAIDVPLDDEERQGIISVTLETALDRLKMADTKRVGPREPEQAS

hide sequence

Ensembl Acc Id:

ENSRNOP00000025686 ⟸ ENSRNOT00000025686

RefSeq Acc Id:	XP_038953849 ⟸ XM_039097921
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038953853 ⟸ XM_039097925
- Peptide Label:	isoform X8
- UniProtKB:	D3ZU07 (UniProtKB/TrEMBL), A0A8I5ZYF3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038953850 ⟸ XM_039097922
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038953854 ⟸ XM_039097926
- Peptide Label:	isoform X9

Ensembl Acc Id:

ENSRNOP00000089205 ⟸ ENSRNOT00000116830

Ensembl Acc Id:

ENSRNOP00000085050 ⟸ ENSRNOT00000095792

RefSeq Acc Id:	XP_063134262 ⟸ XM_063278192
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I5ZYF3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063134263 ⟸ XM_063278193
- Peptide Label:	isoform X8
- UniProtKB:	D3ZU07 (UniProtKB/TrEMBL), A0A8I5ZYF3 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000112312 ⟸ ENSRNOT00000152533

Protein Domains

Translin-associated factor X-interacting protein

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZU07-F1-model_v2	AlphaFold	D3ZU07	1-705	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701087

Promoter ID:

EPDNEW_R11611

Type:

initiation region

Name:

Tsnaxip1_1

Description:

translin-associated factor X interacting protein 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	19	37,795,714 - 37,795,774	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1565341	AgrOrtholog
BioCyc Gene	G2FUF-5808	BioCyc
Ensembl Genes	ENSRNOG00000018954	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000025686	ENTREZGENE
	ENSRNOT00000025686.7	UniProtKB/TrEMBL
	ENSRNOT00000095792.2	UniProtKB/TrEMBL
	ENSRNOT00000116830	ENTREZGENE
	ENSRNOT00000116830.2	UniProtKB/TrEMBL
	ENSRNOT00000152533	ENTREZGENE
	ENSRNOT00000152533.1	UniProtKB/TrEMBL
InterPro	TSNAXIP1_N	UniProtKB/TrEMBL
KEGG Report	rno:498944	UniProtKB/TrEMBL
NCBI Gene	498944	ENTREZGENE
PANTHER	TRANSLIN-ASSOCIATED FACTOR X-INTERACTING PROTEIN 1	UniProtKB/TrEMBL
	TRANSLIN-ASSOCIATED FACTOR X-INTERACTING PROTEIN 1	UniProtKB/TrEMBL
Pfam	TSNAXIP1_N	UniProtKB/TrEMBL
PhenoGen	Tsnaxip1	PhenoGen
RatGTEx	ENSRNOG00000018954	RatGTEx
UniProt	A0A8I5ZYF3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A9Q1	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0M9D5_RAT	UniProtKB/TrEMBL
	A6IYS4	ENTREZGENE, UniProtKB/TrEMBL
	D3ZU07	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-09-09	Tsnaxip1	translin-associated factor X interacting protein 1	Tsnaxip1	translin-associated factor X (Tsnax) interacting protein 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Tsnaxip1	translin-associated factor X (Tsnax) interacting protein 1	RGD1565341_predicted	similar to translin-associated factor X (Tsnax) interacting protein 1 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1565341_predicted	similar to translin-associated factor X (Tsnax) interacting protein 1 (predicted)	LOC498944	similar to translin-associated factor X (Tsnax) interacting protein 1	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC498944	similar to translin-associated factor X (Tsnax) interacting protein 1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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