Trmt13 (tRNA methyltransferase 13) - Rat Genome Database

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Pathways
Gene: Trmt13 (tRNA methyltransferase 13) Rattus norvegicus
Analyze
Symbol: Trmt13
Name: tRNA methyltransferase 13 (Ensembl:tRNA methyltransferase 13 homolog)
RGD ID: 1565211
Description: Predicted to enable tRNA methyltransferase activity. Predicted to be involved in tRNA methylation. Orthologous to human TRMT13 (tRNA methyltransferase 13 homolog); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Ccdc76; coiled-coil domain containing 76; MGC124992; similar to hypothetical protein FLJ10287; tRNA guanosine-2'-O-methyltransferase TRM13 homolog; tRNA methyltransferase 13 homolog; tRNA methyltransferase 13 homolog (S. cerevisiae); tRNA:m(4)X modification enzyme TRM13 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82207,217,399 - 207,232,467 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2207,218,552 - 207,231,701 (-)EnsemblGRCr8
mRatBN7.22204,533,630 - 204,547,711 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2204,533,632 - 204,546,843 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2212,190,857 - 212,203,797 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02210,099,823 - 210,112,980 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02204,916,896 - 204,930,053 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02219,615,665 - 219,628,824 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2219,615,420 - 219,628,997 (-)Ensemblrn6Rnor6.0
Rnor_5.02237,588,550 - 237,601,709 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42212,812,720 - 212,825,603 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2197,025,611 - 197,038,612 (-)NCBICelera
Cytogenetic Map2q42NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data
Trmt13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82207,217,399 - 207,232,467 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2207,218,552 - 207,231,701 (-)EnsemblGRCr8
mRatBN7.22204,533,630 - 204,547,711 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2204,533,632 - 204,546,843 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2212,190,857 - 212,203,797 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02210,099,823 - 210,112,980 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02204,916,896 - 204,930,053 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02219,615,665 - 219,628,824 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2219,615,420 - 219,628,997 (-)Ensemblrn6Rnor6.0
Rnor_5.02237,588,550 - 237,601,709 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42212,812,720 - 212,825,603 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2197,025,611 - 197,038,612 (-)NCBICelera
Cytogenetic Map2q42NCBI
TRMT13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381100,133,163 - 100,150,496 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1100,133,045 - 100,150,496 (+)Ensemblhg38GRCh38
GRCh371100,598,719 - 100,616,052 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361100,371,307 - 100,388,641 (+)NCBIBuild 36Build 36hg18NCBI36
Celera198,855,584 - 98,872,932 (+)NCBICelera
Cytogenetic Map1p21.2NCBI
HuRef198,721,459 - 98,738,807 (+)NCBIHuRef
CHM1_11100,715,060 - 100,732,408 (+)NCBICHM1_1
T2T-CHM13v2.0199,981,278 - 99,998,611 (+)NCBIT2T-CHM13v2.0
Trmt13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393116,365,706 - 116,408,236 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3116,374,742 - 116,408,236 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm383116,576,061 - 116,614,587 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3116,581,093 - 116,614,587 (-)Ensemblmm10GRCm38
MGSCv373116,284,254 - 116,317,505 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv363116,284,254 - 116,317,505 (-)NCBIMGSCv36mm8
Celera3123,008,443 - 123,041,411 (-)NCBICelera
Cytogenetic Map3G1NCBI
cM Map350.4NCBI
Trmt13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554354,885,925 - 4,900,962 (+)Ensembl
ChiLan1.0NW_0049554354,885,910 - 4,902,759 (+)NCBIChiLan1.0ChiLan1.0
TRMT13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21126,873,956 - 126,894,776 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11126,035,464 - 126,052,891 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01102,790,960 - 102,808,365 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11101,506,349 - 101,523,722 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1101,506,349 - 101,523,722 (+)EnsemblpanPan2panpan1.1
TRMT13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1649,836,551 - 49,859,458 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl649,839,047 - 49,859,316 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha652,506,225 - 52,529,170 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0650,182,905 - 50,205,858 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl650,186,900 - 50,209,389 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1649,874,595 - 49,897,537 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0649,853,596 - 49,876,538 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0650,285,279 - 50,308,226 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Trmt13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405058110,484,766 - 110,507,991 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936748289,684 - 313,155 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936748290,033 - 312,097 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRMT13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4117,961,116 - 117,985,620 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.14117,961,114 - 117,985,633 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24129,579,066 - 129,583,763 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRMT13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12033,188,060 - 33,205,434 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2033,189,742 - 33,205,388 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603824,852,141 - 24,869,433 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trmt13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248572,930,691 - 2,948,311 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248572,930,504 - 2,950,288 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Trmt13
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1343,126,038 - 43,139,040 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Trmt13
103 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:206
Count of miRNA genes:135
Interacting mature miRNAs:148
Transcripts:ENSRNOT00000064484
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2163997722225110681Rat
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2169358774214358774Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2170656145239614549Rat
631566Bp90Blood pressure QTL 900.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2149957381221199885Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)267845370229470703Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2204795005249795005Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)283465462229820014Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)220695736231474293Rat
1581576Pur7Proteinuria QTL 70.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)280396178220931218Rat
61458Bp10Blood pressure QTL 103.42arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2191709311217961898Rat
1581578Cm49Cardiac mass QTL 494.90.01heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2145807215220931416Rat
152025245Scl81Serum cholesterol level QTL 813.49blood cholesterol amount (VT:0000180)2124537199209621565Rat
1302789Stl26Serum triglyceride level QTL 263.10.0035blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)2206613059226891081Rat
631198Cm22Cardiac mass QTL 224.30.0008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)278269809208420281Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2122597372215234002Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)280396178220931218Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2205135267250135267Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2196140964251540988Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2205135267250135267Rat
1549833Bp257Blood pressure QTL 2570.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2170652929215652929Rat
1358900Bw48Body weight QTL 484.88body mass (VT:0001259)body weight (CMO:0000012)2159440891220931218Rat
1581499Esta2Estrogen-induced thymic atrophy QTL 2thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2192287802229609668Rat
1359031Bp275Blood pressure QTL 275arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2188565047233565047Rat
9589044Scfw1Subcutaneous fat weight QTL 15.80.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)2184856304229856304Rat
8694435Bw166Body weight QTL 16614.080.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)2184856304229856304Rat
1298083Bp158Blood pressure QTL 1582.62arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2191709311217961898Rat
1357991Ael2Aortic elastin QTL 24.20.000071aorta elastin amount (VT:0003905)aortic elastin2169227906214227906Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)283400752223709938Rat
1331745Bp203Blood pressure QTL 2034.377arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2192287802221089121Rat
61366Iddm3Insulin dependent diabetes mellitus QTL 34.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2192287802237287802Rat
8694194Abfw1Abdominal fat weight QTL 111.70.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)2184856304229856304Rat
1578671Bmd10Bone mineral density QTL 105.4femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)2175931416220931416Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660251712708Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)280396034220931416Rat
2300189Bmd48Bone mineral density QTL 485.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)2182024327227024327Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2159440760228950743Rat
2301408Kidm36Kidney mass QTL 360.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2184482291229482291Rat
631501Bp101Blood pressure QTL 1012.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2205135267250135267Rat
1598813Memor9Memory QTL 92.7exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2202029709236904960Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2143344967251712708Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2143344967251712708Rat
2298479Eau5Experimental allergic uveoretinitis QTL 50.0021uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)2205135267225627153Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2114384617215381366Rat
724568Uae13Urinary albumin excretion QTL 134.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)2145306936212705578Rat
738013Alc15Alcohol consumption QTL 154.10.00022consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)2186850607231850607Rat
61398Bp50Blood pressure QTL 504.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2192287802237287802Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2114384617215381366Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660223841096Rat
61417Cia10Collagen induced arthritis QTL 103.4joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)2182635347227635347Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)283465462225110681Rat
631522Bp74Blood pressure QTL 740.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2175008837220008837Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2203664411248664411Rat
8694383Bw158Body weight QTL 1587.690.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)2184856304229856304Rat
7488927Bp365Blood pressure QTL 3650.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2165453811210453811Rat
7488925Bp364Blood pressure QTL 3640.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2163253030208253030Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2166372086229820014Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)276328396209350714Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001033902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010063655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010063656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC119448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC103656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC166503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000064484   ⟹   ENSRNOP00000062314
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2207,218,552 - 207,231,701 (-)Ensembl
mRatBN7.2 Ensembl2204,533,632 - 204,546,843 (-)Ensembl
Rnor_6.0 Ensembl2219,615,420 - 219,628,997 (-)Ensembl
RefSeq Acc Id: NM_001033902   ⟹   NP_001029074
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82207,218,542 - 207,231,701 (-)NCBI
mRatBN7.22204,533,630 - 204,546,789 (-)NCBI
Rnor_6.02219,615,665 - 219,628,824 (-)NCBI
Rnor_5.02237,588,550 - 237,601,709 (+)NCBI
RGSC_v3.42212,812,720 - 212,825,603 (-)RGD
Celera2197,025,611 - 197,038,612 (-)RGD
Sequence:
RefSeq Acc Id: XM_039102944   ⟹   XP_038958872
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82207,217,399 - 207,231,677 (-)NCBI
mRatBN7.22204,533,877 - 204,546,844 (-)NCBI
RefSeq Acc Id: XM_039102947   ⟹   XP_038958875
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82207,217,399 - 207,231,769 (-)NCBI
mRatBN7.22204,533,630 - 204,546,630 (-)NCBI
RefSeq Acc Id: XM_039102948   ⟹   XP_038958876
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82207,217,399 - 207,232,467 (-)NCBI
mRatBN7.22204,533,630 - 204,547,711 (-)NCBI
RefSeq Acc Id: XM_039102949   ⟹   XP_038958877
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82207,217,399 - 207,232,098 (-)NCBI
mRatBN7.22204,533,630 - 204,547,177 (-)NCBI
RefSeq Acc Id: XM_039102950   ⟹   XP_038958878
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82207,217,399 - 207,231,769 (-)NCBI
mRatBN7.22204,533,877 - 204,546,630 (-)NCBI
RefSeq Acc Id: XM_039102953   ⟹   XP_038958881
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82207,217,399 - 207,232,098 (-)NCBI
mRatBN7.22204,533,877 - 204,547,177 (-)NCBI
RefSeq Acc Id: XM_063282406   ⟹   XP_063138476
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82207,217,399 - 207,231,393 (-)NCBI
RefSeq Acc Id: XM_063282407   ⟹   XP_063138477
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82207,219,816 - 207,231,677 (-)NCBI
RefSeq Acc Id: XM_063282408   ⟹   XP_063138478
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82207,219,816 - 207,231,677 (-)NCBI
RefSeq Acc Id: XR_010063655
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82207,219,816 - 207,231,677 (-)NCBI
RefSeq Acc Id: XR_010063656
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82207,220,075 - 207,231,677 (-)NCBI
RefSeq Acc Id: NP_001029074   ⟸   NM_001033902
- UniProtKB: B2GV29 (UniProtKB/TrEMBL),   F1MAP3 (UniProtKB/TrEMBL),   A6HVA0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000062314   ⟸   ENSRNOT00000064484
RefSeq Acc Id: XP_038958876   ⟸   XM_039102948
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038958877   ⟸   XM_039102949
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038958875   ⟸   XM_039102947
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038958881   ⟸   XM_039102953
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038958872   ⟸   XM_039102944
- Peptide Label: isoform X1
- UniProtKB: A6HVA0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958878   ⟸   XM_039102950
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063138476   ⟸   XM_063282406
- Peptide Label: isoform X2
- UniProtKB: A6HVA0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138478   ⟸   XM_063282408
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063138477   ⟸   XM_063282407
- Peptide Label: isoform X4
Protein Domains
CHHC U11-48K-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B2GV29-F1-model_v2 AlphaFold B2GV29 1-495 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565211 AgrOrtholog
BioCyc Gene G2FUF-51495 BioCyc
BioCyc Pathway PWY-6829 [tRNA methylation (yeast)] BioCyc
BioCyc Pathway Image PWY-6829 BioCyc
Ensembl Genes ENSRNOG00000015140 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000064484 ENTREZGENE
  ENSRNOT00000064484.5 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7122476 IMAGE-MGC_LOAD
InterPro Methyltransferase_TRM13 UniProtKB/TrEMBL
  Trm13 UniProtKB/TrEMBL
  TRM13/UPF0224_CHHC_Znf_dom UniProtKB/TrEMBL
  Znf_CCCH-type_TRM13 UniProtKB/TrEMBL
KEGG Report rno:499697 UniProtKB/TrEMBL
MGC_CLONE MGC:188066 IMAGE-MGC_LOAD
NCBI Gene 499697 ENTREZGENE
PANTHER PTHR12998 UniProtKB/TrEMBL
  TRNA:M(4)X MODIFICATION ENZYME TRM13 HOMOLOG UniProtKB/TrEMBL
Pfam TRM13 UniProtKB/TrEMBL
  UPF0224 UniProtKB/TrEMBL
  zf-TRM13_CCCH UniProtKB/TrEMBL
PhenoGen Trmt13 PhenoGen
PROSITE ZF_CHHC_U11_48K UniProtKB/TrEMBL
RatGTEx ENSRNOG00000015140 RatGTEx
UniProt A6HVA0 ENTREZGENE, UniProtKB/TrEMBL
  B2GV29 ENTREZGENE, UniProtKB/TrEMBL
  F1MAP3 ENTREZGENE
  Q3ZAU3_RAT UniProtKB/TrEMBL
UniProt Secondary F1MAP3 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2025-11-13 Trmt13  tRNA methyltransferase 13  Trmt13  tRNA methyltransferase 13 homolog  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-04-14 Trmt13  tRNA methyltransferase 13 homolog  Trmt13  tRNA methyltransferase 13  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-04-13 Trmt13  tRNA methyltransferase 13  Trmt13  tRNA methyltransferase 13 homolog (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-13 Trmt13  tRNA methyltransferase 13 homolog (S. cerevisiae)  Ccdc76  coiled-coil domain containing 76  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-06 Ccdc76  coiled-coil domain containing 76   MGC124992  similar to hypothetical protein FLJ10287  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 MGC124992  similar to hypothetical protein FLJ10287      Symbol and Name status set to provisional 70820 PROVISIONAL