Rpl12 (ribosomal protein L12) - Rat Genome Database

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Gene: Rpl12 (ribosomal protein L12) Rattus norvegicus
Analyze
Symbol: Rpl12
Name: ribosomal protein L12
RGD ID: 1565106
Description: Enables large ribosomal subunit rRNA binding activity. Involved in positive regulation of translational elongation. Part of cytosolic large ribosomal subunit. Human ortholog(s) of this gene implicated in systemic lupus erythematosus. Orthologous to human RPL12 (ribosomal protein L12); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 60S ribosomal protein L12; large ribosomal subunit protein uL11; LOC499782; RL12; similar to 60S ribosomal protein L12
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Rpl12-ps1   Rpl12a-ps1  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8336,661,940 - 36,664,314 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl336,661,939 - 36,664,306 (+)EnsemblGRCr8
mRatBN7.2316,264,269 - 16,266,645 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl316,264,251 - 16,266,642 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx319,331,560 - 19,333,934 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0327,916,562 - 27,918,936 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0326,168,209 - 26,170,583 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0312,009,578 - 12,011,952 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl312,009,578 - 12,011,666 (+)Ensemblrn6Rnor6.0
Rnor_5.0317,346,211 - 17,348,585 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4311,951,921 - 11,954,295 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera311,003,145 - 11,005,519 (+)NCBICelera
Cytogenetic Map3p11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-palmitoylglycerol  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (ISO)
ammonium chloride  (EXP)
Aroclor 1254  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
bleomycin A2  (EXP)
Brodifacoum  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (ISO)
ciprofibrate  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
cylindrospermopsin  (ISO)
deoxynivalenol  (ISO)
diazinon  (ISO)
dichlorine  (EXP)
diethylstilbestrol  (ISO)
disodium selenite  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
folic acid  (ISO)
FR900359  (ISO)
furan  (EXP)
glafenine  (EXP)
indometacin  (EXP)
inulin  (ISO)
ivermectin  (ISO)
maneb  (ISO)
N-nitrosodiethylamine  (ISO)
nitric oxide  (ISO)
ozone  (EXP)
paracetamol  (EXP,ISO)
paraquat  (ISO)
pentachlorophenol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
PhIP  (EXP)
pregnenolone 16alpha-carbonitrile  (ISO)
propiconazole  (ISO)
pyrogallol  (ISO)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (ISO)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
tetrachloromethane  (EXP)
thiram  (ISO)
triphenyl phosphate  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Autoantibodies to the 20-kDa ribosomal proteins: identification, characterization, and new aspects on prevalence in systemic Lupus erythematosus. Anderson CJ, etal., Clin Immunol. 2001 Feb;98(2):249-57.
2. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Localization of ribosomal proteins on the surface of mammalian 60S ribosomal subunits by means of immobilized enzymes. Correlation with chemical cross-linking data. Marion MJ and Marion C, Biochem Biophys Res Commun. 1987 Dec 31;149(3):1077-83.
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Binding of mammalian ribosomal protein complex P0.P1.P2 and protein L12 to the GTPase-associated domain of 28 S ribosomal RNA and effect on the accessibility to anti-28 S RNA autoantibody. Uchiumi T and Kominami R, J Biol Chem. 1997 Feb 7;272(6):3302-8.
8. A base substitution within the GTPase-associated domain of mammalian 28 S ribosomal RNA causes high thiostrepton accessibility. Uchiumi T, etal., J Biol Chem. 1995 Dec 15;270(50):29889-93.
9. Translation elongation by a hybrid ribosome in which proteins at the GTPase center of the Escherichia coli ribosome are replaced with rat counterparts. Uchiumi T, etal., J Biol Chem. 2002 Feb 8;277(6):3857-62. Epub 2001 Nov 29.
Additional References at PubMed
PMID:1977388   PMID:11809816   PMID:12477932   PMID:12962325   PMID:19946888   PMID:20458337   PMID:21170055   PMID:21423176   PMID:22681889   PMID:23376485   PMID:23979707   PMID:24625528  
PMID:29476059   PMID:30053369   PMID:35352799  


Genomics

Comparative Map Data
Rpl12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8336,661,940 - 36,664,314 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl336,661,939 - 36,664,306 (+)EnsemblGRCr8
mRatBN7.2316,264,269 - 16,266,645 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl316,264,251 - 16,266,642 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx319,331,560 - 19,333,934 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0327,916,562 - 27,918,936 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0326,168,209 - 26,170,583 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0312,009,578 - 12,011,952 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl312,009,578 - 12,011,666 (+)Ensemblrn6Rnor6.0
Rnor_5.0317,346,211 - 17,348,585 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4311,951,921 - 11,954,295 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera311,003,145 - 11,005,519 (+)NCBICelera
Cytogenetic Map3p11NCBI
RPL12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389127,447,674 - 127,451,406 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9127,447,422 - 127,451,446 (-)Ensemblhg38GRCh38
GRCh379130,209,953 - 130,213,685 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369129,249,776 - 129,253,505 (-)NCBIBuild 36Build 36hg18NCBI36
Build 349127,289,508 - 127,293,238NCBI
Celera9100,860,830 - 100,864,559 (-)NCBICelera
Cytogenetic Map9q33.3NCBI
HuRef999,825,937 - 99,829,695 (-)NCBIHuRef
CHM1_19130,361,248 - 130,365,006 (-)NCBICHM1_1
T2T-CHM13v2.09139,654,623 - 139,658,356 (-)NCBIT2T-CHM13v2.0
Rpl12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39232,851,724 - 32,854,057 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl232,851,571 - 32,855,357 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38232,961,712 - 32,964,045 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl232,961,559 - 32,965,345 (+)Ensemblmm10GRCm38
MGSCv37232,817,232 - 32,819,565 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36232,783,735 - 32,786,050 (+)NCBIMGSCv36mm8
Celera232,668,694 - 32,671,027 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map222.09NCBI
Rpl12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554191,154,397 - 1,157,500 (+)Ensembl
ChiLan1.0NW_0049554191,154,397 - 1,157,508 (+)NCBIChiLan1.0ChiLan1.0
RPL12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21111,902,774 - 11,906,616 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1911,905,194 - 11,908,971 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0998,567,972 - 98,571,748 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19127,241,688 - 127,245,451 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9127,241,688 - 127,245,450 (-)EnsemblpanPan2panpan1.1
RPL12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1955,894,942 - 55,898,816 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl955,894,913 - 55,917,406 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha955,087,338 - 55,091,212 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0956,816,447 - 56,820,313 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl956,816,418 - 56,838,925 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1955,576,159 - 55,580,024 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0955,891,195 - 55,895,067 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0955,981,919 - 55,985,789 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rpl12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947195,394,692 - 195,410,833 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648715,177,329 - 15,180,847 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648715,177,252 - 15,179,360 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1267,961,404 - 267,964,881 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11267,961,398 - 267,964,881 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21301,871,922 - 301,875,394 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPL12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11210,677,061 - 10,681,041 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660795,534,529 - 5,538,584 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247608,031,208 - 8,039,436 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247608,031,211 - 8,034,690 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Rpl12
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v152,666,523 - 2,668,799 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rpl12
7 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:136
Count of miRNA genes:73
Interacting mature miRNAs:76
Transcripts:ENSRNOT00000021725, ENSRNOT00000041210
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32905627547904329Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
10450811Scl73Serum cholesterol level QTL 734.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat
10450808Scl72Serum cholesterol level QTL 724.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
10450806Scl71Serum cholesterol level QTL 715.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)32862533967641995Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)3612543751125437Rat
8693641Alc30Alcohol consumption QTL 3020.739drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)33083238444921701Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)33540319997383526Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3136721849Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3655634751556347Rat
1558657Cm43Cardiac mass QTL 436.63e-08heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)33610140381101403Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31527234860272348Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)32905627547904329Rat
1300169Bp177Blood pressure QTL 1772.96arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)33642511681425116Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
22 12 73 196 124 119 76 98 76 12 413 216 11 163 91 111 43 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000021725   ⟹   ENSRNOP00000021725
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl316,264,251 - 16,266,642 (+)Ensembl
Rnor_6.0 Ensembl312,009,578 - 12,011,666 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000105986   ⟹   ENSRNOP00000092359
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl336,661,939 - 36,664,306 (+)Ensembl
mRatBN7.2 Ensembl316,264,267 - 16,266,638 (+)Ensembl
RefSeq Acc Id: NM_001109198   ⟹   NP_001102668
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,661,940 - 36,664,314 (+)NCBI
mRatBN7.2316,264,269 - 16,266,643 (+)NCBI
Rnor_6.0312,009,578 - 12,011,952 (+)NCBI
Rnor_5.0317,346,211 - 17,348,585 (+)NCBI
RGSC_v3.4311,951,921 - 11,954,295 (+)RGD
Celera311,003,145 - 11,005,519 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001102668 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI66903 (Get FASTA)   NCBI Sequence Viewer  
  EDL93198 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000041462.1
  ENSRNOP00000092359
GenBank Protein P23358 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001102668   ⟸   NM_001109198
- UniProtKB: P23358 (UniProtKB/Swiss-Prot),   B2RYU2 (UniProtKB/TrEMBL),   A6IGP6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000021725   ⟸   ENSRNOT00000021725
Ensembl Acc Id: ENSRNOP00000092359   ⟸   ENSRNOT00000105986
Protein Domains
Large ribosomal subunit protein uL11 C-terminal   Large ribosomal subunit protein uL11 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P23358-F1-model_v2 AlphaFold P23358 1-165 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691998
Promoter ID:EPDNEW_R2523
Type:multiple initiation site
Name:Rpl12_1
Description:ribosomal protein L12
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0312,009,577 - 12,009,637EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565106 AgrOrtholog
BioCyc Gene G2FUF-50115 BioCyc
Ensembl Genes ENSRNOG00000016220 Ensembl, ENTREZGENE
  ENSRNOG00000028993 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000042736.2 UniProtKB/Swiss-Prot
  ENSRNOT00000105986 ENTREZGENE
Gene3D-CATH 1.10.10.250 UniProtKB/Swiss-Prot
  3.30.1550.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6886805 IMAGE-MGC_LOAD
InterPro Ribosomal_L11/L12 UniProtKB/Swiss-Prot
  Ribosomal_L11/L12_N_sf UniProtKB/Swiss-Prot
  Ribosomal_L11_C UniProtKB/Swiss-Prot
  Ribosomal_L11_C_sf UniProtKB/Swiss-Prot
  Ribosomal_L11_CS UniProtKB/Swiss-Prot
  Ribosomal_L11_N UniProtKB/Swiss-Prot
KEGG Report rno:499782 UniProtKB/Swiss-Prot
MGC_CLONE MGC:188865 IMAGE-MGC_LOAD
NCBI Gene 499782 ENTREZGENE
PANTHER LARGE RIBOSOMAL SUBUNIT PROTEIN UL11 UniProtKB/Swiss-Prot
  PTHR11661 UniProtKB/Swiss-Prot
Pfam Ribosomal_L11 UniProtKB/Swiss-Prot
  Ribosomal_L11_N UniProtKB/Swiss-Prot
PhenoGen Rpl12 PhenoGen
PROSITE RIBOSOMAL_L11 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000016220 RatGTEx
  ENSRNOG00000028993 RatGTEx
SMART RL11 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF46906 UniProtKB/Swiss-Prot
  SSF54747 UniProtKB/Swiss-Prot
UniProt A0A8I6AFD1_RAT UniProtKB/TrEMBL
  A6IGP6 ENTREZGENE, UniProtKB/TrEMBL
  B2RYU2 ENTREZGENE, UniProtKB/TrEMBL
  P23358 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-14 Rpl12  ribosomal protein L12  LOC499782  similar to 60S ribosomal protein L12  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC499782  similar to 60S ribosomal protein L12      Symbol and Name status set to provisional 70820 PROVISIONAL