Klf13 (KLF transcription factor 13) - Rat Genome Database

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Gene: Klf13 (KLF transcription factor 13) Rattus norvegicus
Analyze
Symbol: Klf13
Name: KLF transcription factor 13
RGD ID: 1565099
Description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of cell population proliferation; negative regulation of erythrocyte differentiation; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Orthologous to human KLF13 (KLF transcription factor 13); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Krueppel-like factor 13; Kruppel-like factor 13; LOC499171; RGD1565099; similar to BTEB3 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81126,917,671 - 126,948,436 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1126,916,781 - 126,961,056 (-)EnsemblGRCr8
mRatBN7.21117,505,857 - 117,536,626 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1117,503,602 - 117,551,227 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1125,481,839 - 125,512,610 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01132,664,376 - 132,695,144 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01125,495,077 - 125,525,856 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01124,772,596 - 124,803,363 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1124,772,596 - 124,803,363 (-)Ensemblrn6Rnor6.0
Rnor_5.01125,883,341 - 125,914,101 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41118,368,164 - 118,398,938 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1109,762,642 - 109,793,430 (-)NCBICelera
Cytogenetic Map1q22NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-methylcholine  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3,4-methylenedioxymethamphetamine  (EXP,ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
6-propyl-2-thiouracil  (EXP)
Aflatoxin B2 alpha  (ISO)
aldehydo-D-glucose  (EXP)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
amitrole  (EXP)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
carvedilol  (EXP)
CGP 52608  (ISO)
chlorpyrifos  (EXP)
choline  (ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
crocidolite asbestos  (ISO)
cyclophosphamide  (ISO)
D-glucose  (EXP)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibenz[a,h]anthracene  (ISO)
dichloroacetic acid  (ISO)
dichloromethane  (ISO)
dicrotophos  (ISO)
diethylstilbestrol  (ISO)
dioxygen  (EXP)
doxorubicin  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fenthion  (ISO)
folic acid  (ISO)
FR900359  (ISO)
geraniol  (ISO)
glucose  (EXP)
hydrogen cyanide  (ISO)
L-methionine  (ISO)
methapyrilene  (ISO)
methimazole  (EXP)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
ozone  (ISO)
paracetamol  (ISO)
pentachlorophenol  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
phenobarbital  (ISO)
pirinixic acid  (ISO)
potassium cyanide  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
resveratrol  (EXP)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
tetrachloroethene  (ISO)
tetrachloromethane  (EXP)
thimerosal  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichloroethene  (EXP,ISO)
triphenyl phosphate  (EXP,ISO)
tungsten  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10642511   PMID:18285334   PMID:29122578   PMID:29377979  


Genomics

Comparative Map Data
Klf13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81126,917,671 - 126,948,436 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1126,916,781 - 126,961,056 (-)EnsemblGRCr8
mRatBN7.21117,505,857 - 117,536,626 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1117,503,602 - 117,551,227 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1125,481,839 - 125,512,610 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01132,664,376 - 132,695,144 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01125,495,077 - 125,525,856 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01124,772,596 - 124,803,363 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1124,772,596 - 124,803,363 (-)Ensemblrn6Rnor6.0
Rnor_5.01125,883,341 - 125,914,101 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41118,368,164 - 118,398,938 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1109,762,642 - 109,793,430 (-)NCBICelera
Cytogenetic Map1q22NCBI
KLF13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381531,326,835 - 31,435,665 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1531,326,706 - 31,435,665 (+)Ensemblhg38GRCh38
GRCh371531,619,038 - 31,727,868 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361529,406,375 - 29,457,394 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341529,406,374 - 29,457,393NCBI
Celera159,344,613 - 9,395,650 (+)NCBICelera
Cytogenetic Map15q13.3NCBI
HuRef158,795,864 - 8,846,859 (+)NCBIHuRef
CHM1_11531,609,998 - 31,661,037 (+)NCBICHM1_1
T2T-CHM13v2.01529,120,947 - 29,230,012 (+)NCBIT2T-CHM13v2.0
Klf13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39763,536,099 - 63,588,663 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl763,536,099 - 63,588,663 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38763,886,351 - 63,938,915 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl763,886,351 - 63,938,915 (-)Ensemblmm10GRCm38
MGSCv37771,031,237 - 71,083,801 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36763,770,317 - 63,817,807 (-)NCBIMGSCv36mm8
Celera761,323,891 - 61,376,961 (-)NCBICelera
Cytogenetic Map7CNCBI
cM Map734.58NCBI
Klf13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541630,087,705 - 30,137,437 (+)Ensembl
ChiLan1.0NW_00495541630,087,705 - 30,137,437 (+)NCBIChiLan1.0ChiLan1.0
KLF13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21620,134,237 - 20,281,052 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11524,858,345 - 25,004,850 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0159,818,294 - 9,964,912 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11528,895,493 - 28,907,236 (+)NCBIPanPan1.1PanPan1.1panPan2
KLF13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha340,305,981 - 40,356,168 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0338,007,383 - 38,057,914 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl338,012,977 - 38,057,834 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1337,539,905 - 37,590,337 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0337,793,598 - 37,843,701 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0338,003,294 - 38,053,725 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Klf13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640145,759,345 - 145,807,029 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936483532,736 - 575,237 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936483477,490 - 575,143 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KLF13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1143,493,527 - 143,540,563 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11143,499,136 - 143,540,233 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21159,400,720 - 159,485,260 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KLF13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12651,308,233 - 51,359,433 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2651,313,743 - 51,359,340 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604889,467,068 - 89,518,243 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Klf13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247681,573,326 - 1,612,211 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247681,568,168 - 1,612,324 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Klf13
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12136,432,096 - 136,475,456 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Klf13
151 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:88
Count of miRNA genes:78
Interacting mature miRNAs:79
Transcripts:ENSRNOT00000066380
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631496Bp97Blood pressure QTL 973.08arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1115183611176289080Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)187889942132889942Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
1331793Bp200Blood pressure QTL 2003.71601arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1102780511182384005Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1101228864146228864Rat
1354591Cm36Cardiac mass QTL 364.1heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1111949780210707719Rat
1331800Scl25Serum cholesterol level QTL 253.013blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)187785026142582336Rat
631684Bp117Blood pressure QTL 1178.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1120082258165082258Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183019780128019780Rat
9590300Scort16Serum corticosterone level QTL 164.390.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1112521556157521556Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
631519Pia11Pristane induced arthritis QTL 115.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)193903998191260518Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
61399Tcat1Tongue tumor resistance QTL 13.3tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 5 mm (CMO:0001879)1108680016153680016Rat
631569Bp93Blood pressure QTL 930.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1115183611131244255Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)191302413136302413Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
724567Tcas6Tongue tumor susceptibility QTL 66.85tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)1102359314153680016Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)199645382182701046Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)199645382221502378Rat
1354615Cm32Cardiac mass QTL 325.2heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1111949780210707719Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)186622262131622262Rat
8655649Arrd1Age-related retinal degeneration QTL 14.89retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1109493780193400781Rat
8694370Bw154Body weight QTL 1548.910.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)1112521556157521556Rat
2317833Alcrsp19Alcohol response QTL 1912.40.001response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1110389869155389869Rat
1300153Bp171Blood pressure QTL 1713.37arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1124975316152612788Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1103779152223964440Rat
1354623Rf46Renal function QTL 463.8blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)1111949780160574007Rat
631205Bp196Blood pressure QTL 19640.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)198879955208479939Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of, or within a discrete space in an open field apparatus (CMO:0001514)192683681137683681Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)186993904131993904Rat
1641897Alcrsp1Alcohol response QTL 1response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1110389869155389869Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)192683681137683681Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)187558587132558587Rat
737977Bp160Blood pressure QTL 1600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)197582336142582336Rat
1331751Bp199Blood pressure QTL 1993.60022arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1116099376191260518Rat
2293142Bp314Blood pressure QTL 314arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1101594089146594089Rat
61433Cia2Collagen induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1100345976145345976Rat
724529Cm16Cardiac mass QTL 162.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)196717367160111531Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1111949780228180370Rat
61370Mcs3Mammary carcinoma susceptibility QTL 32.15mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1111404407142582336Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 159 91 90 59 92 59 6 348 189 8 141 76 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000066380   ⟹   ENSRNOP00000063436
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1126,917,671 - 126,948,436 (-)Ensembl
mRatBN7.2 Ensembl1117,505,857 - 117,536,626 (-)Ensembl
Rnor_6.0 Ensembl1124,772,596 - 124,803,363 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000098876   ⟹   ENSRNOP00000077272
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1117,503,602 - 117,551,227 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000159328   ⟹   ENSRNOP00000112302
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1126,916,781 - 126,961,056 (-)Ensembl
RefSeq Acc Id: NM_001109147   ⟹   NP_001102617
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81126,917,671 - 126,948,436 (-)NCBI
mRatBN7.21117,505,857 - 117,536,626 (-)NCBI
Rnor_6.01124,772,596 - 124,803,363 (-)NCBI
Rnor_5.01125,883,341 - 125,914,101 (-)NCBI
RGSC_v3.41118,368,164 - 118,398,938 (-)RGD
Celera1109,762,642 - 109,793,430 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001102617 (Get FASTA)   NCBI Sequence Viewer  
  NP_001425194 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM08377 (Get FASTA)   NCBI Sequence Viewer  
  EDM08378 (Get FASTA)   NCBI Sequence Viewer  
  EDM08379 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000063436.1
  ENSRNOP00000112302.1
RefSeq Acc Id: NP_001102617   ⟸   NM_001109147
- Sequence:
Ensembl Acc Id: ENSRNOP00000063436   ⟸   ENSRNOT00000066380
Ensembl Acc Id: ENSRNOP00000077272   ⟸   ENSRNOT00000098876
Ensembl Acc Id: ENSRNOP00000112302   ⟸   ENSRNOT00000159328
Protein Domains
C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZVI8-F1-model_v2 AlphaFold D3ZVI8 1-131 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565099 AgrOrtholog
BioCyc Gene G2FUF-59087 BioCyc
Ensembl Genes ENSRNOG00000015822 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000066380.3 UniProtKB/TrEMBL
  ENSRNOT00000159328.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
KEGG Report rno:499171 UniProtKB/TrEMBL
NCBI Gene 499171 ENTREZGENE
PANTHER KRUEPPEL-LIKE FACTOR 13 UniProtKB/TrEMBL
  KRUEPPEL-LIKE TRANSCRIPTION FACTOR UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
PhenoGen Klf13 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000015822 RatGTEx
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A8I5ZJF5 ENTREZGENE
  A0ABK0M883_RAT UniProtKB/TrEMBL
  A6JBK0 ENTREZGENE, UniProtKB/TrEMBL
  A6JBK1_RAT UniProtKB/TrEMBL
  D3ZVI8_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-10-03 Klf13  KLF transcription factor 13  Klf13  Kruppel-like factor 13  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 Klf13  Kruppel-like factor 13  RGD1565099_predicted  similar to BTEB3 protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1565099_predicted  similar to BTEB3 protein (predicted)  LOC499171  similar to BTEB3 protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC499171  similar to BTEB3 protein      Symbol and Name status set to provisional 70820 PROVISIONAL