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Gene: C2h3orf33 (similar to human chromosome 3 open reading frame 33) Rattus norvegicus

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Symbol:

C2h3orf33

Name:

similar to human chromosome 3 open reading frame 33

RGD ID:

1565059

Description:

Predicted to be involved in negative regulation of ERK1 and ERK2 cascade. Predicted to be located in membrane. Predicted to be active in extracellular space. Orthologous to human C3orf33 (chromosome 3 open reading frame 33); INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; acrylamide; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

C3orf33l; chromosome 3 open reading frame 33 like; hypothetical protein LOC499630; LOC499630; RGD1565059; similar to hypothetical protein E130311K13; uncharacterized protein C3orf33 homolog; uncharacterized protein LOC499630

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	C3orf33 (chromosome 3 open reading frame 33)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, Panther
Mus musculus (house mouse):	E130311K13Rik (RIKEN cDNA E130311K13 gene)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	LOC102015999 (chromosome unknown open reading frame, human C3orf33)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	C2H3orf33 (chromosome 2 C3orf33 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	C23H3orf33 (chromosome 23 C3orf33 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	CUNH3orf33 (chromosome unknown C3orf33 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	C13H3orf33 (chromosome 13 C3orf33 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	C15H3orf33 (chromosome 15 C3orf33 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	CUNH3orf33 (chromosome unknown C3orf33 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	C3H3orf33 (chromosome 3 C3orf33 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	C3orf33 (chromosome 3 open reading frame 33)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	E130311K13Rik (RIKEN cDNA E130311K13 gene)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	c18h3orf33 (c18h3orf33 homolog (H. sapiens))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG30159	Alliance	DIOPT (OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	F32A11.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	F32A11.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	W09H1.3	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	c5h3orf33	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	150,522,758 - 150,554,007 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	150,530,231 - 150,554,055 (-)	Ensembl				GRCr8
mRatBN7.2	2	148,376,598 - 148,404,343 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	148,380,581 - 148,404,387 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	155,109,255 - 155,133,038 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	153,158,712 - 153,182,503 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	147,791,385 - 147,815,176 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	154,485,133 - 154,508,907 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	154,486,012 - 154,508,877 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	173,865,086 - 173,892,722 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	153,709,289 - 153,733,281 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	142,663,578 - 142,679,854 (-)	NCBI		Celera
Cytogenetic Map	2	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

acrylamide (EXP)

all-trans-retinoic acid (ISO)

amiodarone (ISO)

arsane (ISO)

arsenic atom (ISO)

bisphenol A (EXP)

cadmium dichloride (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dorsomorphin (ISO)

endosulfan (EXP)

gentamycin (EXP)

hydrogen peroxide (ISO)

methamphetamine (EXP)

ochratoxin A (EXP)

panobinostat (ISO)

potassium chromate (ISO)

quercetin (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

thioacetamide (EXP)

trichloroethene (EXP)

trichostatin A (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of ERK1 and ERK2 cascade (IEA,ISO)

Cellular Component

extracellular space (IBA,IEA,ISO)

membrane (IEA)

mitochondrion (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:20680465	PMID:34800366

Genomics

Comparative Map Data

C2h3orf33
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	150,522,758 - 150,554,007 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	150,530,231 - 150,554,055 (-)	Ensembl				GRCr8
mRatBN7.2	2	148,376,598 - 148,404,343 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	148,380,581 - 148,404,387 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	155,109,255 - 155,133,038 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	153,158,712 - 153,182,503 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	147,791,385 - 147,815,176 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	154,485,133 - 154,508,907 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	154,486,012 - 154,508,877 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	173,865,086 - 173,892,722 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	153,709,289 - 153,733,281 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	142,663,578 - 142,679,854 (-)	NCBI		Celera
Cytogenetic Map	2	q31	NCBI

C3orf33
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	155,762,617 - 155,806,278 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	155,762,612 - 155,806,288 (-)	Ensembl			hg38	GRCh38
GRCh37	3	155,480,406 - 155,524,067 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	156,963,095 - 157,006,749 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	3	153,901,052 - 153,944,745 (-)	NCBI		Celera
Cytogenetic Map	3	q25.31	NCBI
HuRef	3	152,874,043 - 152,917,703 (-)	NCBI		HuRef
CHM1_1	3	155,443,578 - 155,487,412 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	158,536,490 - 158,580,161 (-)	NCBI		T2T-CHM13v2.0

E130311K13Rik
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	63,822,103 - 63,836,897 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	63,822,105 - 63,836,893 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	3	63,914,682 - 63,929,507 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	63,914,684 - 63,929,472 (-)	Ensembl			mm10	GRCm38
MGSCv37	3	63,718,618 - 63,733,307 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	3	64,002,625 - 64,017,314 (-)	NCBI		MGSCv36	mm8
Celera	3	63,586,850 - 63,601,416 (-)	NCBI		Celera
Cytogenetic Map	3	E1	NCBI
cM Map	3	30.08	NCBI

LOC102015999
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955448	6,836,587 - 6,849,935 (-)	Ensembl
ChiLan1.0	NW_004955448	6,836,631 - 6,849,024 (-)	NCBI	ChiLan1.0	ChiLan1.0

C2H3orf33
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	153,677,435 - 153,724,079 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	153,682,166 - 153,728,821 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	152,818,445 - 152,861,945 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	160,870,570 - 160,912,949 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	160,870,570 - 160,912,955 (-)	Ensembl			panPan2	panpan1.1

C23H3orf33
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	49,485,250 - 49,504,331 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	49,493,795 - 49,504,372 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	49,361,107 - 49,384,066 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	50,128,364 - 50,142,813 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	50,128,367 - 50,142,885 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	49,714,796 - 49,728,304 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	49,755,759 - 49,777,300 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	50,040,179 - 50,063,098 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

CUNH3orf33
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	86,701,020 - 86,720,812 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936519	3,012,829 - 3,032,972 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936519	3,013,140 - 3,032,925 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

C13H3orf33
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	13	95,658,531 - 95,673,882 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	103,681,363 - 103,696,705 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

C15H3orf33
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	34,957,396 - 35,001,654 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	34,957,628 - 35,004,215 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666041	7,592,355 - 7,645,760 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CUNH3orf33
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	33,360,011 - 33,366,284 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624730	33,360,381 - 33,370,788 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

C3H3orf33
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	91,310,053 - 91,328,154 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in C2h3orf33
273 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	295
Count of miRNA genes:	189
Interacting mature miRNAs:	211
Transcripts:	ENSRNOT00000065346
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2293671	Bss44	Bone structure and strength QTL 44	10.97	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	2	105628029	150628029	Rat
631566	Bp90	Blood pressure QTL 90		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	149957381	221199885	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	67845370	229470703	Rat
1358360	Sradr2	Stress Responsive Adrenal Weight QTL 2	10.24		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	2	124103798	154505346	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	83465462	229820014	Rat
1298076	Bp166	Blood pressure QTL 166		0.0009	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	138595962	205135428	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	20695736	231474293	Rat
1581576	Pur7	Proteinuria QTL 7		0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	2	80396178	220931218	Rat
1581578	Cm49	Cardiac mass QTL 49	4.9	0.01	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	145807215	220931416	Rat
152025245	Scl81	Serum cholesterol level QTL 81	3.49		blood cholesterol amount (VT:0000180)		2	124537199	209621565	Rat
631198	Cm22	Cardiac mass QTL 22	4.3	0.0008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	78269809	208420281	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	122597372	215234002	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	80396178	220931218	Rat
10043136	Iddm54	Insulin dependent diabetes mellitus QTL 54	3.4	0.0001	blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	145807215	190807215	Rat
10043139	Iddm55	Insulin dependent diabetes mellitus QTL 55	3.1	0.0001	blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	150313808	195313808	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	143565208	188565208	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	4265106	205135428	Rat
1581502	Esta3	Estrogen-induced thymic atrophy QTL 3			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	139067258	192287892	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
1582257	Gluco21	Glucose level QTL 21	3.1	0.0035	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	120039407	159440891	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
2301966	Bp322	Blood pressure QTL 322	3.58		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	144882354	205135428	Rat
8662836	Vetf8	Vascular elastic tissue fragility QTL 8	0.66		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	106869825	151869825	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	67845182	205135428	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
5135226	Leukc2	Leukocyte quantity QTL 2			eosinophil quantity (VT:0002602)	blood eosinophil count (CMO:0000033)	2	120039407	151869825	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	83400752	223709938	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
1359022	Ppulsi1	Prepulse inhibition QTL 1	3.63		prepulse inhibition trait (VT:0003088)	acoustic startle response measurement (CMO:0001519)	2	139067258	184067258	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	80396034	220931416	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	78269809	205135428	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	143344967	251712708	Rat
71113	Cari2	Carrageenan-induced inflammation QTL 2	2.7	0.009	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	2	143746578	205135428	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	143344967	251712708	Rat
1598805	Memor8	Memory QTL 8	3		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	2	150096616	195096616	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	114384617	215381366	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
724568	Uae13	Urinary albumin excretion QTL 13	4.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	2	145306936	212705578	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
1300165	Rf9	Renal function QTL 9	3.28		kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	2	113746222	205135428	Rat
61401	Niddm2	Non-insulin dependent diabetes mellitus QTL 2	4.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	147287892	192287892	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	114384617	215381366	Rat
738007	Anxrr7	Anxiety related response QTL 7	4.4		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	2	120339555	165339555	Rat
1354609	Niddm62	Non-insulin dependent diabetes mellitus QTL 62	4.72	0.000006	insulin secretion trait (VT:0003564)	plasma insulin level (CMO:0000342)	2	117415288	205135428	Rat
2293835	Kiddil5	Kidney dilation QTL 5	3.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	159440891	Rat
631520	Bp73	Blood pressure QTL 73		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	149806826	170653323	Rat
1598833	Bp295	Blood pressure QTL 295	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150096616	195096616	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	83465462	225110681	Rat
1558653	Prcr1	Prostate cancer resistance QTL 1	5		prostate integrity trait (VT:0010571)	area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)	2	114440891	159440891	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	47856345	205135428	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	184731399	Rat
1354594	Despr10	Despair related QTL 10		2e-06	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	2	116804572	161804572	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	76328396	209350714	Rat
6903312	Bw112	Body weight QTL 112	3.2	0.0013	body mass (VT:0001259)	body weight (CMO:0000012)	2	145807215	173074435	Rat
152025206	Hrtrt23	Heart rate QTL 23	5.98		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
152025204	Hrtrt22	Heart rate QTL 22	5.6		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	89	59	6	353	189	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001127562	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001399811	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232448	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761057	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102887	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102888	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282368	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282369	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005500342	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010063643	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC167078	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000065346 ⟹ ENSRNOP00000060271

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	150,530,231 - 150,553,742 (-)	Ensembl
mRatBN7.2 Ensembl	2	148,381,459 - 148,404,080 (-)	Ensembl
Rnor_6.0 Ensembl	2	154,486,012 - 154,508,641 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000086472 ⟹ ENSRNOP00000072611

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	150,530,231 - 150,553,994 (-)	Ensembl
mRatBN7.2 Ensembl	2	148,380,581 - 148,404,314 (-)	Ensembl
Rnor_6.0 Ensembl	2	154,486,259 - 154,508,877 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095481 ⟹ ENSRNOP00000084806

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	150,530,231 - 150,554,055 (-)	Ensembl
mRatBN7.2 Ensembl	2	148,380,581 - 148,404,387 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098033 ⟹ ENSRNOP00000078083

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	150,530,231 - 150,550,833 (-)	Ensembl
mRatBN7.2 Ensembl	2	148,380,581 - 148,401,589 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113310 ⟹ ENSRNOP00000077389

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	150,530,231 - 150,553,018 (-)	Ensembl
mRatBN7.2 Ensembl	2	148,380,581 - 148,403,356 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000116449 ⟹ ENSRNOP00000093053

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	150,530,231 - 150,550,604 (-)	Ensembl
mRatBN7.2 Ensembl	2	148,380,581 - 148,400,948 (-)	Ensembl

RefSeq Acc Id:

NM_001127562 ⟹ NP_001121034

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	150,530,231 - 150,553,742 (-)	NCBI
mRatBN7.2	2	148,380,576 - 148,404,080 (-)	NCBI
Rnor_6.0	2	154,486,012 - 154,508,641 (-)	NCBI
Rnor_5.0	2	173,865,086 - 173,892,722 (-)	NCBI
RGSC_v3.4	2	153,709,289 - 153,733,281 (-)	RGD
Celera	2	142,663,578 - 142,679,854 (-)	RGD

Sequence:

show sequence

AGGGAGGCGACAACGCCTCTTTTGCCGCCCTGGCGGCGGCAATCAGGCCTGGAGGCTGGCCCAA
GGCTGGGGACACCATGGGGCTGGTCTAGGAGTAGCTCCTCTTTCAGTATTGGCCTGCTGGAAAC
GCAGTAAGAGCAGAGGGGAGGCCTTGGCAGAACCTTGATGGGTTTTCTCAAGGCTGAGGTTCAA
ACTTCGAACATCAGCACTGGAATGGCCATAGCTGGGATAGTGTTACTAATAAGGAGCGTTCGGC
TGACGTCAAAATTTACAACCTCCTCAGATATTCCAGTAGAATTTATAAGAAAGAAAGTTAAACT
ACGTGGCCGATTACAGCGGATAACTGAGTGTGGTCTAGAAATTGAACATGTACCTATTACTTTA
CCTTTCATATCTTCATGGAAACAAGAGCCGTGTGGAGTTTTGTTGGTTAAATTGGCTGGAGTAG
AACTCACTGAAGCCGGTAAGGTGTGGCTACAGAAAGAACTGAGACCTTCCCAGCTCCTGTGGTT
CCAGCTCCTTGGAAAGGAGAATTCAGAACTCTTTTGCTACCTCTTAGTGAACAAGGGTGGATAT
TTTAATGTGAATCTGAATGAGGAGATTTTGAGAAGAGGCTTGGGCAAAACCGTTCTTGTTAAAG
GGCTAAATTACGACTCAAAAACCCACTGGAAAATTCACAGAAAGTTGCTTAAAGCTGAATTGAC
AGCCTTAAAGAAAGGAGAAGGAATCTGGAAGGAAGAGTCTGAAAAAGAAAGTTATTTTAGAAAA
TTGAAAGATTCCTGGAGGGAGAGATGGACAAAGGACAATGATTTAAAAACAGCCGGACCGGGTC
TCAGCGCCACCAAAGAGGGTCATTACGACAGGTTTCGCAGGGCTTACGGAAGCTGGAAGGACAA
CATGGGCAACTACTCTTTAGTTCTGAAACTCAGAGAATTCGTGAGCCGCTTACACTTTCGGAGG
AAAGGATGAACCTCCATGAAGTCTGGAGTGGCTCTCCCTGAAGAGTGCCCTGGAGCTGTGAGAG
CACTTTTCATTTGACTCAAAATGGGAATTACCTCAGGTGATCATAATCCCCGTCTCCTGGTACT
TACACATTATAGCCATTGTTAACATCAGCATCAATGAAAGAATGGCACACTGTGAATGTTACCC
GGTAGAAGGATGTACATATTGTAGAACTTATGTTTTGCCTTTATCTTTTCCTCCCTGCCCCCTA
GTGCCATGAATTGAACTCAGGGTCTCAGGCACTCTGGTCTGCAGCACACCATTACTGAGTTTTA
TTACCAACCCTACAGTGGTAATGTCTGAAGAGTAAGTTTAAGTATTGACTTCTATTAGTGGTTT
GGGGCAGCCCATATTTAACATTTGTTTTTCAATTTTATCAACTTTATAATAAAGGAATTTTTTT
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001399811 ⟹ NP_001386740

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	150,530,231 - 150,553,994 (-)	NCBI
mRatBN7.2	2	148,380,576 - 148,404,332 (-)	NCBI

RefSeq Acc Id:

XM_006232448 ⟹ XP_006232510

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	150,530,229 - 150,554,006 (-)	NCBI
mRatBN7.2	2	148,380,576 - 148,404,342 (-)	NCBI
Rnor_6.0	2	154,485,133 - 154,508,907 (-)	NCBI
Rnor_5.0	2	173,865,086 - 173,892,722 (-)	NCBI

Sequence:

show sequence

CAGCGCCCCCTGCTGCCCACCAGGGGGAACCCGCTGGACGCCGGAACATGGCGCCGCTGCCCGC
GAGCCTCGGGTCGCAGGCTTCCGACCGCGACCGAGGGGAGGCCAACGTGGTAACGCGGATGTCG
CAGTGGGCGGACAACCATCTGCGTCTTGTCCAGACGTCAAAATTTACAACCTCCTCAGATATTC
CAGTAGAATTTATAAGAAAGAAAGTTAAACTACGTGGCCGATTACAGCGGATAACTGAGTGTGG
TCTAGAAATTGAACATGTACCTATTACTTTACCTTTCATATCTTCATGGAAACAAGAGCCGTGT
GGAGTTTTGTTGGTTAAATTGGCTGGAGTAGAACTCACTGAAGCCGGTAAGGTGTGGCTACAGA
AAGAACTGAGACCTTCCCAGCTCCTGTGGTTCCAGCTCCTTGGAAAGGAGAATTCAGAACTCTT
TTGCTACCTCTTAGTGAACAAGGGTGGATATTTTAATGTGAATCTGAATGAGGAGATTTTGAGA
AGAGGCTTGGGCAAAACCGTTCTTGTTAAAGGGCTAAATTACGACTCAAAAACCCACTGGAAAA
TTCACAGAAAGTTGCTTAAAGCTGAATTGACAGCCTTAAAGAAAGGAGAAGGAATCTGGAAGGA
AGAGTCTGAAAAAGAAAGTTATTTTAGAAAATTGAAAGATTCCTGGAGGGAGAGATGGACAAAG
GACAATGATTTAAAAACAGCCGGACCGGGTCTCAGCGCCACCAAAGAGGGTCATTACGACAGGT
TTCGCAGGGCTTACGGAAGCTGGAAGGACAACATGGGCAACTACTCTTTAGTTCTGAAACTCAG
AGAATTCGTGAGCCGCTTACACTTTCGGAGGAAAGGATGAACCTCCATGAAGTCTGGAGTGGCT
CTCCCTGAAGAGTGCCCTGGAGCTGTGAGAGCACTTTTCATTTGACTCAAAATGGGAATTACCT
CAGGTGATCATAATCCCCGTCTCCTGGTACTTACACATTATAGCCATTGTTAACATCAGCATCA
ATGAAAGAATGGCACACTGTGAATGTTACCCGGTAGAAGGATGTACATATTGTAGAACTTATGT
TTTGCCTTTATCTTTTCCTCCCTGCCCCCTAGTGCCATGAATTGAACTCAGGGTCTCAGGCACT
CTGGTCTGCAGCACACCATTACTGAGTTTTATTACCAACCCTACAGTGGTAATGTCTGAAGAGT
AAGTTTAAGTATTGACTTCTATTAGTGGTTTGGGGCAGCCCATATTTAACATTTGTTTTTCAAT
TTTATCAACTTTATAATAAAGGAATTTTTTTTAAAAAATTTTCTTTCTGAGGTCACTCTTTTTC
TTCAAGCATCTTTCCAGTTACTCCTGAATTAGGACCACTGATCCAAGAGGTACAGCCACCATTC
CTCATAATAAATGCAGCTAATTTCATTCTGTTCTTAGATAAGAGGATTGCCCTTAAGACAAAGA
TGAGAAGGACAACCCAGAGGACAGAAAGGAAGGATCTTTAGGACATCACGGAGCCCCTGAACTC
ACCAATTCTTGAACTACCCTGCCTTCCAACTCCTAAGTACCCAAGAGAGTAAACTGCTTTGACA
GTAAGGTTAGTTTCAAGTTGGGTGTGGTGGCACCACCTGTAATCCCAGCACTTGGTAAGTACAG
ACTGGAGGAGAAGAATTCAAGGTTATCCCTGGTTCATACTGAATTCAAAACCAGTTTGAGCTAA
TTAGTATGAGACTTTATCTAAAAATCAGAAATAATGAAAGCAAAAACACCCCCAAACCACTTTA
AGGTATGCATTAAAATCTTCCTGACAAAGTAAGCCTCTTTCACAAGCCCAACAGTAGTTTGCTT
ACTGTTTCGACTTGGTCTAACAATGGAGTCCTTCGAGGGAAATTCTGAATGCTTGTGAGAAAAC
TCCAAGAAAACAAGAGTCTTGTGACCTAAGTTTCTTCAAAAACACAAAATTGTGTATAAAATGT
GCTTTCGTGCCCTTCCCAGGTATTGCAGATAGGAGTGAGCTCACTCCAGAGTATTCATTACAAC
TGGATAGCGTTACTTGTTTATATGCCTCTTTGGAAAAACATGTTTTTGCCACATGTCCTTGTGA
TTGTAAACTTTACTCAGGTGACTTTTCTTAACCCCCAGAGTATAAATTGTCTGAGGCTCTGAAT
AAAATTGGCTATTGCATGAGA

hide sequence

RefSeq Acc Id:

XM_039102887 ⟹ XP_038958815

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	150,522,758 - 150,554,006 (-)	NCBI
mRatBN7.2	2	148,376,598 - 148,404,343 (-)	NCBI

RefSeq Acc Id:

XM_039102888 ⟹ XP_038958816

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	150,530,229 - 150,554,006 (-)	NCBI
mRatBN7.2	2	148,380,576 - 148,404,343 (-)	NCBI

RefSeq Acc Id:

XM_063282368 ⟹ XP_063138438

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	150,522,758 - 150,554,007 (-)	NCBI

RefSeq Acc Id:

XM_063282369 ⟹ XP_063138439

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	150,530,229 - 150,554,007 (-)	NCBI

RefSeq Acc Id:

XR_005500342

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	150,522,758 - 150,554,006 (-)	NCBI
mRatBN7.2	2	148,380,576 - 148,404,343 (-)	NCBI

RefSeq Acc Id:

XR_010063643

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	150,530,229 - 150,554,006 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001121034	(Get FASTA)	NCBI Sequence Viewer
	NP_001386740	(Get FASTA)	NCBI Sequence Viewer
	XP_006232510	(Get FASTA)	NCBI Sequence Viewer
	XP_038958815	(Get FASTA)	NCBI Sequence Viewer
	XP_038958816	(Get FASTA)	NCBI Sequence Viewer
	XP_063138438	(Get FASTA)	NCBI Sequence Viewer
	XP_063138439	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI67078	(Get FASTA)	NCBI Sequence Viewer
	EDM14809	(Get FASTA)	NCBI Sequence Viewer
	EDM14810	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000060271
	ENSRNOP00000060271.2
	ENSRNOP00000072611
	ENSRNOP00000072611.1
	ENSRNOP00000077389.1
	ENSRNOP00000078083.1
	ENSRNOP00000084806
	ENSRNOP00000084806.1
	ENSRNOP00000093053.1

RefSeq Acc Id:

NP_001121034 ⟸ NM_001127562

- UniProtKB:

B2RZA0 (UniProtKB/TrEMBL), A0A8I5Y9H8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAIAGIVLLIRSVRLTSKFTTSSDIPVEFIRKKVKLRGRLQRITECGLEIEHVPITLPFISSWK
QEPCGVLLVKLAGVELTEAGKVWLQKELRPSQLLWFQLLGKENSELFCYLLVNKGGYFNVNLNE
EILRRGLGKTVLVKGLNYDSKTHWKIHRKLLKAELTALKKGEGIWKEESEKESYFRKLKDSWRE
RWTKDNDLKTAGPGLSATKEGHYDRFRRAYGSWKDNMGNYSLVLKLREFVSRLHFRRKG

hide sequence

RefSeq Acc Id:	XP_006232510 ⟸ XM_006232448
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A0D1 (UniProtKB/TrEMBL), A0A8I6AIX7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAPLPASLGSQASDRDRGEANVVTRMSQWADNHLRLVQTSKFTTSSDIPVEFIRKKVKLRGRLQ RITECGLEIEHVPITLPFISSWKQEPCGVLLVKLAGVELTEAGKVWLQKELRPSQLLWFQLLGK ENSELFCYLLVNKGGYFNVNLNEEILRRGLGKTVLVKGLNYDSKTHWKIHRKLLKAELTALKKG EGIWKEESEKESYFRKLKDSWRERWTKDNDLKTAGPGLSATKEGHYDRFRRAYGSWKDNMGNYS LVLKLREFVSRLHFRRKG hide sequence

Ensembl Acc Id:

ENSRNOP00000060271 ⟸ ENSRNOT00000065346

Ensembl Acc Id:

ENSRNOP00000072611 ⟸ ENSRNOT00000086472

RefSeq Acc Id:	XP_038958815 ⟸ XM_039102887
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038958816 ⟸ XM_039102888
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSRNOP00000077389 ⟸ ENSRNOT00000113310

Ensembl Acc Id:

ENSRNOP00000078083 ⟸ ENSRNOT00000098033

Ensembl Acc Id:

ENSRNOP00000093053 ⟸ ENSRNOT00000116449

Ensembl Acc Id:

ENSRNOP00000084806 ⟸ ENSRNOT00000095481

RefSeq Acc Id:	NP_001386740 ⟸ NM_001399811
- UniProtKB:	A0A0G2K3F1 (UniProtKB/TrEMBL), A6JVP2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063138438 ⟸ XM_063282368
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063138439 ⟸ XM_063282369
- Peptide Label:	isoform X5

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K3F1-F1-model_v2	AlphaFold	A0A0G2K3F1	1-294	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691358

Promoter ID:

EPDNEW_R1880

Type:

single initiation site

Name:

RGD1565059_1

Description:

similar to hypothetical protein E130311K13

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	154,508,883 - 154,508,943	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1565059	AgrOrtholog
BioCyc Gene	G2FUF-52925	BioCyc
Ensembl Genes	ENSRNOG00000021324	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000065346	ENTREZGENE
	ENSRNOT00000065346.5	UniProtKB/TrEMBL
	ENSRNOT00000086472	ENTREZGENE
	ENSRNOT00000086472.3	UniProtKB/TrEMBL
	ENSRNOT00000095481	ENTREZGENE
	ENSRNOT00000095481.2	UniProtKB/TrEMBL
	ENSRNOT00000098033.2	UniProtKB/TrEMBL
	ENSRNOT00000113310.2	UniProtKB/TrEMBL
	ENSRNOT00000116449.2	UniProtKB/TrEMBL
Gene3D-CATH	2.40.50.90	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7133153	IMAGE-MGC_LOAD
InterPro	C3orf33-like	UniProtKB/TrEMBL
	Staphylococcal_nuclease/TUDOR	UniProtKB/TrEMBL
KEGG Report	rno:499630	UniProtKB/TrEMBL
MGC_CLONE	MGC:189431	IMAGE-MGC_LOAD
NCBI Gene	499630	ENTREZGENE
PANTHER	PROTEIN C3ORF33	UniProtKB/TrEMBL
	PTHR28434	UniProtKB/TrEMBL
PhenoGen	C2h3orf33	PhenoGen
RatGTEx	ENSRNOG00000021324	RatGTEx
Superfamily-SCOP	SSF50199	UniProtKB/TrEMBL
UniProt	A0A0G2K3F1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5Y8F0_RAT	UniProtKB/TrEMBL
	A0A8I5Y9H8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A0D1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AIX7	ENTREZGENE, UniProtKB/TrEMBL
	A6JVP2	ENTREZGENE, UniProtKB/TrEMBL
	B2RZA0	ENTREZGENE, UniProtKB/TrEMBL
	F7F0A6_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-05-27	C2h3orf33	similar to human chromosome 3 open reading frame 33	C3orf33l	chromosome 3 open reading frame 33 like	Name and Symbol changed	629549	APPROVED
2022-05-03	C3orf33l	chromosome 3 open reading frame 33 like	RGD1565059	similar to hypothetical protein E130311K13	Name and Symbol changed	629549	APPROVED
2008-04-30	RGD1565059	similar to hypothetical protein E130311K13	RGD1565059_predicted	similar to hypothetical protein E130311K13 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1565059_predicted	similar to hypothetical protein E130311K13 (predicted)	LOC499630	similar to hypothetical protein E130311K13	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC499630	similar to hypothetical protein E130311K13			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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