Wdr43 (WD repeat domain 43) - Rat Genome Database

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Gene: Wdr43 (WD repeat domain 43) Rattus norvegicus
Analyze
Symbol: Wdr43
Name: WD repeat domain 43
RGD ID: 1565005
Description: Predicted to enable RNA polymerase II complex binding activity and transcription elongation factor activity. Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); regulation of RNA metabolic process; and regulation of stem cell population maintenance. Predicted to be located in chromatin; fibrillar center; and nucleoplasm. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Orthologous to human WDR43 (WD repeat domain 43); PARTICIPATES IN ribosome biogenesis pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC362703; MGC116335; similar to WD-repeat protein 43; WD repeat-containing protein 43
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8629,565,610 - 29,604,954 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl629,565,610 - 29,604,954 (-)EnsemblGRCr8
mRatBN7.2623,845,499 - 23,884,846 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl623,845,499 - 23,884,846 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx624,145,107 - 24,184,448 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0624,460,981 - 24,500,322 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0623,949,165 - 23,988,264 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0623,433,532 - 23,473,179 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl623,433,532 - 23,473,169 (-)Ensemblrn6Rnor6.0
Rnor_5.0633,299,540 - 33,339,177 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4623,950,923 - 23,990,272 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera623,344,770 - 23,384,117 (-)NCBICelera
Cytogenetic Map6q14NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2-hydroxypropanoic acid  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
alpha-pinene  (ISO)
antimycin A  (ISO)
aristolochic acid A  (ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (EXP)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
cobalt dichloride  (EXP)
coumarin  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
cylindrospermopsin  (ISO)
DDE  (ISO)
decabromodiphenyl ether  (ISO)
deguelin  (ISO)
deoxynivalenol  (ISO)
dibutyl phthalate  (EXP)
diethylstilbestrol  (ISO)
dimethyl sulfoxide  (ISO)
dioxygen  (ISO)
endosulfan  (EXP)
enzyme inhibitor  (ISO)
fipronil  (EXP)
fluoranthene  (ISO)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
herbicide  (ISO)
ivermectin  (ISO)
ketoconazole  (ISO)
leflunomide  (ISO)
mercury dichloride  (EXP)
mesotrione  (ISO)
methoxyacetic acid  (EXP)
methylmercury chloride  (EXP)
mono(2-ethylhexyl) phthalate  (ISO)
Monobutylphthalate  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
perfluorononanoic acid  (ISO)
pirinixic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sunitinib  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (EXP,ISO)
urethane  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatin  (IEA,ISO)
fibrillar center  (IEA,ISO)
nucleolus  (IBA,IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IEA)
small-subunit processome  (IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:17699751   PMID:22658674   PMID:24219289   PMID:31128943  


Genomics

Comparative Map Data
Wdr43
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8629,565,610 - 29,604,954 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl629,565,610 - 29,604,954 (-)EnsemblGRCr8
mRatBN7.2623,845,499 - 23,884,846 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl623,845,499 - 23,884,846 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx624,145,107 - 24,184,448 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0624,460,981 - 24,500,322 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0623,949,165 - 23,988,264 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0623,433,532 - 23,473,179 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl623,433,532 - 23,473,169 (-)Ensemblrn6Rnor6.0
Rnor_5.0633,299,540 - 33,339,177 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4623,950,923 - 23,990,272 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera623,344,770 - 23,384,117 (-)NCBICelera
Cytogenetic Map6q14NCBI
WDR43
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38228,894,667 - 28,948,219 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl228,894,638 - 28,948,223 (+)Ensemblhg38GRCh38
GRCh37229,117,533 - 29,171,085 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36228,971,037 - 29,024,584 (+)NCBIBuild 36Build 36hg18NCBI36
Celera228,962,215 - 29,015,725 (+)NCBICelera
Cytogenetic Map2p23.2NCBI
HuRef228,858,993 - 28,912,363 (+)NCBIHuRef
CHM1_1229,048,026 - 29,101,578 (+)NCBICHM1_1
T2T-CHM13v2.0228,938,252 - 28,991,773 (+)NCBIT2T-CHM13v2.0
Wdr43
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391771,923,175 - 71,966,026 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1771,922,890 - 71,966,026 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381771,616,178 - 71,659,031 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1771,615,895 - 71,659,031 (+)Ensemblmm10GRCm38
MGSCv371771,965,555 - 72,008,371 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361771,521,072 - 71,563,888 (+)NCBIMGSCv36mm8
Celera1775,892,336 - 75,935,090 (+)NCBICelera
Cytogenetic Map17E1.3NCBI
cM Map1741.87NCBI
Wdr43
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546910,777,292 - 10,835,577 (+)Ensembl
ChiLan1.0NW_00495546910,777,332 - 10,835,577 (+)NCBIChiLan1.0ChiLan1.0
WDR43
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21297,558,175 - 97,612,251 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A97,562,148 - 97,616,208 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A28,901,521 - 28,955,579 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A28,955,612 - 29,034,485 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A28,987,883 - 29,033,049 (+)EnsemblpanPan2panpan1.1
WDR43
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11722,769,281 - 22,813,559 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1722,769,318 - 22,812,199 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1722,563,584 - 22,607,784 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01723,331,918 - 23,376,135 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1723,331,947 - 23,376,131 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11722,631,178 - 22,675,451 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01722,683,827 - 22,728,006 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01722,799,918 - 22,844,094 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Wdr43
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629266,925,384 - 66,968,637 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364933,869,906 - 3,914,215 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364933,871,167 - 3,914,172 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDR43
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3110,318,538 - 110,365,062 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.13110,317,549 - 110,365,108 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23117,165,162 - 117,192,545 (-)NCBISscrofa10.2Sscrofa10.2susScr3
WDR43
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11478,653,957 - 78,714,353 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604533,425,386 - 33,482,003 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wdr43
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473810,818,727 - 10,876,848 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473810,818,792 - 10,874,641 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Wdr43
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1721,558,804 - 21,597,710 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Wdr43
154 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:287
Count of miRNA genes:191
Interacting mature miRNAs:227
Transcripts:ENSRNOT00000035320
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6197587946975879Rat
8693645Alc31Alcohol consumption QTL 313.70.038drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)62328466429732046Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
8552910Pigfal5Plasma insulin-like growth factor 1 level QTL 54.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)62265388967653889Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6323998948239989Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6197587946975879Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6197587946975879Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6144788383Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6197587946975879Rat
2292616Ept15Estrogen-induced pituitary tumorigenesis QTL 154.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6144788383Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6197587946975879Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6186868070Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6323998948239989Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6323998948239989Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6140163351Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)61459947363457687Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)61608937261967788Rat
1358190Ept1Estrogen-induced pituitary tumorigenesis QTL 14.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6144788383Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6323998948239989Rat
1359023Bp272Blood pressure QTL 2722.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)62228825732981219Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)62228825767288257Rat

Markers in Region
RH129043  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2623,845,544 - 23,845,751 (+)MAPPERmRatBN7.2
Rnor_6.0623,433,578 - 23,433,784NCBIRnor6.0
Rnor_5.0633,299,586 - 33,299,792UniSTSRnor5.0
RGSC_v3.4623,950,969 - 23,951,175UniSTSRGSC3.4
Celera623,344,816 - 23,345,022UniSTS
Cytogenetic Map6q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000035320   ⟹   ENSRNOP00000033485
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl629,565,610 - 29,604,954 (-)Ensembl
mRatBN7.2 Ensembl623,845,499 - 23,884,846 (-)Ensembl
Rnor_6.0 Ensembl623,433,532 - 23,473,169 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000115867   ⟹   ENSRNOP00000080448
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl629,565,610 - 29,604,954 (-)Ensembl
mRatBN7.2 Ensembl623,845,499 - 23,884,846 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000121171   ⟹   ENSRNOP00000112404
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl629,565,978 - 29,604,954 (-)Ensembl
RefSeq Acc Id: NM_001037791   ⟹   NP_001032880
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8629,565,610 - 29,604,954 (-)NCBI
mRatBN7.2623,845,499 - 23,884,846 (-)NCBI
Rnor_6.0623,433,532 - 23,473,169 (-)NCBI
Rnor_5.0633,299,540 - 33,339,177 (-)NCBI
RGSC_v3.4623,950,923 - 23,990,272 (-)RGD
Celera623,344,770 - 23,384,117 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001032880 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH99168 (Get FASTA)   NCBI Sequence Viewer  
  EDM02876 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000033485
  ENSRNOP00000033485.4
  ENSRNOP00000080448.1
  ENSRNOP00000112404.1
RefSeq Acc Id: NP_001032880   ⟸   NM_001037791
- UniProtKB: G3V920 (UniProtKB/TrEMBL),   A6HA21 (UniProtKB/TrEMBL),   A0A8I5ZQB1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000033485   ⟸   ENSRNOT00000035320
Ensembl Acc Id: ENSRNOP00000080448   ⟸   ENSRNOT00000115867
Ensembl Acc Id: ENSRNOP00000112404   ⟸   ENSRNOT00000121171
Protein Domains
Small-subunit processome Utp12

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V920-F1-model_v2 AlphaFold G3V920 1-674 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694417
Promoter ID:EPDNEW_R4942
Type:multiple initiation site
Name:Wdr43_1
Description:WD repeat domain 43
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0623,473,152 - 23,473,212EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565005 AgrOrtholog
BioCyc Gene G2FUF-38388 BioCyc
Ensembl Genes ENSRNOG00000026316 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000035320 ENTREZGENE
  ENSRNOT00000035320.6 UniProtKB/TrEMBL
  ENSRNOT00000115867.2 UniProtKB/TrEMBL
  ENSRNOT00000121171.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro SSU_processome_Utp12 UniProtKB/TrEMBL
  U3_snoRNA-assoc_WDR UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
KEGG Report rno:362703 UniProtKB/TrEMBL
NCBI Gene 362703 ENTREZGENE
PANTHER WD REPEAT-CONTAINING PROTEIN 43 UniProtKB/TrEMBL
  WD REPEAT-CONTAINING PROTEIN 43 UniProtKB/TrEMBL
Pfam Utp12 UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PhenoGen Wdr43 PhenoGen
PROSITE WD_REPEATS_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000026316 RatGTEx
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP WD40_like UniProtKB/TrEMBL
UniProt A0A8I5ZQB1 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0M8K2_RAT UniProtKB/TrEMBL
  A6HA21 ENTREZGENE, UniProtKB/TrEMBL
  G3V920 ENTREZGENE, UniProtKB/TrEMBL
  Q4KLJ6_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-05 Wdr43  WD repeat domain 43  LOC362703  similar to WD-repeat protein 43  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC362703  similar to WD-repeat protein 43      Symbol and Name status set to provisional 70820 PROVISIONAL