Cyth4 (cytohesin 4) - Rat Genome Database

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Gene: Cyth4 (cytohesin 4) Rattus norvegicus
Analyze
Symbol: Cyth4
Name: cytohesin 4
RGD ID: 1564842
Description: Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in regulation of ARF protein signal transduction. Predicted to be located in several cellular components, including centriolar satellite; cytosol; and intercellular bridge. Predicted to be extrinsic component of synaptic membrane. Orthologous to human CYTH4 (cytohesin 4); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cytohesin-4; LOC500906; pleckstrin homology, Sec7 and coiled/coil domains 4; Pscd4; RGD1564842; similar to cytohesin-4
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87112,032,711 - 112,057,204 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7112,032,775 - 112,057,204 (+)EnsemblGRCr8
mRatBN7.27110,152,232 - 110,176,726 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7110,152,272 - 110,176,741 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7111,902,464 - 111,926,898 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07114,125,991 - 114,150,429 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07114,093,739 - 114,118,177 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07119,820,521 - 119,845,003 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7119,820,537 - 119,845,003 (+)Ensemblrn6Rnor6.0
Rnor_5.07119,809,471 - 119,833,941 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47116,557,797 - 116,582,215 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7106,489,779 - 106,514,242 (+)NCBICelera
Cytogenetic Map7q34NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10652308   PMID:12477932   PMID:17398095  


Genomics

Comparative Map Data
Cyth4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87112,032,711 - 112,057,204 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7112,032,775 - 112,057,204 (+)EnsemblGRCr8
mRatBN7.27110,152,232 - 110,176,726 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7110,152,272 - 110,176,741 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7111,902,464 - 111,926,898 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07114,125,991 - 114,150,429 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07114,093,739 - 114,118,177 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07119,820,521 - 119,845,003 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7119,820,537 - 119,845,003 (+)Ensemblrn6Rnor6.0
Rnor_5.07119,809,471 - 119,833,941 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47116,557,797 - 116,582,215 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7106,489,779 - 106,514,242 (+)NCBICelera
Cytogenetic Map7q34NCBI
CYTH4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382237,282,508 - 37,315,341 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2237,282,027 - 37,315,346 (+)Ensemblhg38GRCh38
GRCh372237,678,549 - 37,711,382 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362236,008,370 - 36,041,328 (+)NCBIBuild 36Build 36hg18NCBI36
Build 342236,002,923 - 36,035,880NCBI
Celera2221,479,377 - 21,512,272 (+)NCBICelera
Cytogenetic Map22q13.1NCBI
HuRef2220,643,760 - 20,676,655 (+)NCBIHuRef
CHM1_12237,637,472 - 37,670,270 (+)NCBICHM1_1
T2T-CHM13v2.02237,743,033 - 37,775,859 (+)NCBIT2T-CHM13v2.0
Cyth4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391578,481,247 - 78,506,219 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1578,481,247 - 78,506,219 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381578,597,047 - 78,622,019 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1578,597,047 - 78,622,019 (+)Ensemblmm10GRCm38
MGSCv371578,427,477 - 78,452,449 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361578,424,373 - 78,448,141 (+)NCBIMGSCv36mm8
Celera1580,059,894 - 80,084,897 (+)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.59NCBI
Cyth4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541323,745,777 - 23,768,387 (+)Ensembl
ChiLan1.0NW_00495541323,745,797 - 23,774,397 (+)NCBIChiLan1.0ChiLan1.0
CYTH4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22347,139,849 - 47,172,838 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12249,828,410 - 49,861,400 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02218,197,307 - 18,230,274 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12236,030,112 - 36,063,113 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2236,040,326 - 36,061,264 (+)EnsemblpanPan2panpan1.1
CYTH4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11027,238,028 - 27,268,759 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1027,239,405 - 27,268,823 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1027,193,046 - 27,223,768 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01028,030,394 - 28,061,112 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1028,030,404 - 28,061,050 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11027,752,171 - 27,782,867 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01028,060,838 - 28,091,563 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01028,238,677 - 28,269,414 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cyth4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494510,662,060 - 10,694,093 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364923,679,716 - 3,697,771 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364923,678,299 - 3,703,787 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CYTH4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl510,489,289 - 10,521,735 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1510,491,202 - 10,521,583 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.258,074,091 - 8,104,464 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CYTH4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11919,989,081 - 20,021,545 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1920,001,934 - 20,021,539 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666045105,806,480 - 105,839,003 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cyth4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475210,537,687 - 10,559,804 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475210,536,539 - 10,559,090 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Cyth4
92 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:151
Count of miRNA genes:127
Interacting mature miRNAs:134
Transcripts:ENSRNOT00000056221
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)792388565119280177Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)782111245123048330Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7104186212135371468Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)771621154114982716Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)773618702118618702Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)793302009131686183Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)795485047137014596Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)785043242130043242Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)785497398130497398Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)783626689128626689Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)782111382132099989Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)798549867137014596Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
631201Panci1Pancreas inflammation QTL 100.001pancreas integrity trait (VT:0010560)percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)773557047118557047Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)782111245123048330Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)796700404118618702Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)749682832115766396Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7110725024135371468Rat
10450862Kidm55Kidney mass QTL 554.9kidney mass (VT:0002707)kidney weight (CMO:0000081)772725037117725037Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)7100548246137014596Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
10450856Livw4Liver weight QTL 43.8liver mass (VT:0003402)liver weight (CMO:0000092)772725037117725037Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)749682832115766396Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)778682549123682549Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)749682832115766396Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)771621154119349044Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat

Markers in Region
BE107924  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27110,168,724 - 110,168,883 (+)MAPPERmRatBN7.2
Rnor_6.07119,836,987 - 119,837,145NCBIRnor6.0
Rnor_5.07119,825,925 - 119,826,083UniSTSRnor5.0
RGSC_v3.47116,574,199 - 116,574,357UniSTSRGSC3.4
Celera7106,506,226 - 106,506,384UniSTS
RH 3.4 Map7818.3UniSTS
Cytogenetic Map7q34UniSTS
AA893106  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27110,151,351 - 110,151,443 (+)MAPPERmRatBN7.2
Rnor_6.07119,819,616 - 119,819,707NCBIRnor6.0
Rnor_5.07119,808,554 - 119,808,645UniSTSRnor5.0
RGSC_v3.47116,556,873 - 116,556,964UniSTSRGSC3.4
Celera7106,488,855 - 106,488,946UniSTS
RH 3.4 Map7817.2UniSTS
Cytogenetic Map7q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 140 81 92 31 16 16

Sequence


Ensembl Acc Id: ENSRNOT00000056221   ⟹   ENSRNOP00000053065
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7112,032,782 - 112,057,204 (+)Ensembl
mRatBN7.2 Ensembl7110,152,276 - 110,176,741 (+)Ensembl
Rnor_6.0 Ensembl7119,820,540 - 119,845,003 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000077256   ⟹   ENSRNOP00000071361
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7112,032,784 - 112,057,202 (+)Ensembl
mRatBN7.2 Ensembl7110,152,276 - 110,176,741 (+)Ensembl
Rnor_6.0 Ensembl7119,820,537 - 119,844,668 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000105447   ⟹   ENSRNOP00000076651
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7112,032,775 - 112,057,202 (+)Ensembl
mRatBN7.2 Ensembl7110,152,272 - 110,176,741 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000107283   ⟹   ENSRNOP00000091539
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7110,152,276 - 110,160,142 (+)Ensembl
RefSeq Acc Id: NM_001130577   ⟹   NP_001124049
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87112,032,782 - 112,057,204 (+)NCBI
mRatBN7.27110,152,302 - 110,176,726 (+)NCBI
Rnor_6.07119,820,540 - 119,845,003 (+)NCBI
Rnor_5.07119,809,471 - 119,833,941 (+)NCBI
RGSC_v3.47116,557,797 - 116,582,215 (+)RGD
Celera7106,489,779 - 106,514,242 (+)RGD
Sequence:
RefSeq Acc Id: NM_001414977   ⟹   NP_001401906
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87112,032,782 - 112,057,204 (+)NCBI
mRatBN7.27110,152,302 - 110,176,726 (+)NCBI
RefSeq Acc Id: XM_017595057   ⟹   XP_017450546
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87112,032,756 - 112,057,204 (+)NCBI
mRatBN7.27110,152,274 - 110,176,726 (+)NCBI
Rnor_6.07119,820,534 - 119,844,988 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039079763   ⟹   XP_038935691
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87112,032,711 - 112,057,204 (+)NCBI
mRatBN7.27110,152,232 - 110,176,726 (+)NCBI
RefSeq Acc Id: XM_063264137   ⟹   XP_063120207
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87112,032,752 - 112,057,204 (+)NCBI
RefSeq Acc Id: XM_063264138   ⟹   XP_063120208
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87112,032,768 - 112,057,204 (+)NCBI
RefSeq Acc Id: XM_063264139   ⟹   XP_063120209
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87112,032,768 - 112,057,204 (+)NCBI
RefSeq Acc Id: XM_063264140   ⟹   XP_063120210
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87112,032,770 - 112,057,204 (+)NCBI
RefSeq Acc Id: NP_001124049   ⟸   NM_001130577
- Peptide Label: isoform 2
- UniProtKB: D3ZHR6 (UniProtKB/TrEMBL),   A6HSL5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450546   ⟸   XM_017595057
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSRNOP00000071361   ⟸   ENSRNOT00000077256
Ensembl Acc Id: ENSRNOP00000053065   ⟸   ENSRNOT00000056221
RefSeq Acc Id: XP_038935691   ⟸   XM_039079763
- Peptide Label: isoform X3
- UniProtKB: A0A0G2K0A0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000076651   ⟸   ENSRNOT00000105447
Ensembl Acc Id: ENSRNOP00000091539   ⟸   ENSRNOT00000107283
RefSeq Acc Id: NP_001401906   ⟸   NM_001414977
- Peptide Label: isoform 1
- UniProtKB: A6HSL4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063120207   ⟸   XM_063264137
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063120208   ⟸   XM_063264138
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063120209   ⟸   XM_063264139
- Peptide Label: isoform X5
- UniProtKB: A0A8I5ZK46 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063120210   ⟸   XM_063264140
- Peptide Label: isoform X6
Protein Domains
PH   SEC7

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K0A0-F1-model_v2 AlphaFold A0A0G2K0A0 1-394 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695467
Promoter ID:EPDNEW_R5991
Type:single initiation site
Name:Cyth4_1
Description:cytohesin 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07119,820,566 - 119,820,626EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564842 AgrOrtholog
BioCyc Gene G2FUF-32803 BioCyc
Ensembl Genes ENSRNOG00000007679 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000056221 ENTREZGENE
  ENSRNOT00000056221.4 UniProtKB/TrEMBL
  ENSRNOT00000077256 ENTREZGENE
  ENSRNOT00000077256.3 UniProtKB/TrEMBL
  ENSRNOT00000105447 ENTREZGENE
  ENSRNOT00000105447.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1000.11 UniProtKB/TrEMBL
  1.10.220.20 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
InterPro PH_type UniProtKB/TrEMBL
  Pleckstrin_homology UniProtKB/TrEMBL
  Sec7 UniProtKB/TrEMBL
  SEC7_alpha_orthog UniProtKB/TrEMBL
  Sec7_sf UniProtKB/TrEMBL
KEGG Report rno:500906 UniProtKB/TrEMBL
NCBI Gene 500906 ENTREZGENE
PANTHER CYTOHESIN-4 UniProtKB/TrEMBL
  GUANYL-NUCLEOTIDE EXCHANGE FACTOR UniProtKB/TrEMBL
Pfam PF00169 UniProtKB/TrEMBL
  Sec7 UniProtKB/TrEMBL
PhenoGen Cyth4 PhenoGen
PROSITE PH_DOMAIN UniProtKB/TrEMBL
  SEC7 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000007679 RatGTEx
SMART Sec7 UniProtKB/TrEMBL
  SM00233 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  Sec7 UniProtKB/TrEMBL
UniProt A0A0G2K0A0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZK46 ENTREZGENE, UniProtKB/TrEMBL
  A6HSL4 ENTREZGENE, UniProtKB/TrEMBL
  A6HSL5 ENTREZGENE, UniProtKB/TrEMBL
  D3ZHR6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-11-04 Cyth4  cytohesin 4  Pscd4  pleckstrin homology, Sec7 and coiled/coil domains 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 Pscd4  pleckstrin homology, Sec7 and coiled/coil domains 4  RGD1564842_predicted  similar to cytohesin-4 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1564842_predicted  similar to cytohesin-4 (predicted)  LOC500906  similar to cytohesin-4  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC500906  similar to cytohesin-4      Symbol and Name status set to provisional 70820 PROVISIONAL