Rnf224 (ring finger protein 224) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Pathways
Gene: Rnf224 (ring finger protein 224) Rattus norvegicus
Analyze
Symbol: Rnf224
Name: ring finger protein 224
RGD ID: 1564535
Description: Predicted to enable zinc ion binding activity. Orthologous to human RNF224 (ring finger protein 224); INTERACTS WITH bisphenol A; Cuprizon; 1,2-dichloroethane (ortholog).
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: LOC366004; RGD1564535; similar to RiNg Finger protein (rnf-1)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8328,448,248 - 28,450,576 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl328,448,248 - 28,450,981 (-)EnsemblGRCr8
mRatBN7.238,050,088 - 8,052,416 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl38,051,475 - 8,051,945 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx311,154,799 - 11,157,127 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0319,741,028 - 19,743,356 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0317,930,871 - 17,933,199 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.032,454,077 - 2,458,186 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl32,455,571 - 2,456,041 (-)Ensemblrn6Rnor6.0
Rnor_5.032,435,362 - 2,437,452 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.433,400,680 - 3,401,150 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera32,876,616 - 2,880,682 (-)NCBICelera
Cytogenetic Map3p13NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Rnf224
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8328,448,248 - 28,450,576 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl328,448,248 - 28,450,981 (-)EnsemblGRCr8
mRatBN7.238,050,088 - 8,052,416 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl38,051,475 - 8,051,945 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx311,154,799 - 11,157,127 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0319,741,028 - 19,743,356 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0317,930,871 - 17,933,199 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.032,454,077 - 2,458,186 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl32,455,571 - 2,456,041 (-)Ensemblrn6Rnor6.0
Rnor_5.032,435,362 - 2,437,452 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.433,400,680 - 3,401,150 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera32,876,616 - 2,880,682 (-)NCBICelera
Cytogenetic Map3p13NCBI
RNF224
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389137,227,502 - 137,229,640 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9137,226,908 - 137,229,640 (+)Ensemblhg38GRCh38
GRCh379140,121,954 - 140,124,092 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369139,241,972 - 139,243,359 (+)NCBIBuild 36Build 36hg18NCBI36
Cytogenetic Map9q34.3NCBI
HuRef9109,581,280 - 109,583,416 (+)NCBIHuRef
CHM1_19140,270,752 - 140,272,824 (+)NCBICHM1_1
T2T-CHM13v2.09149,465,171 - 149,467,309 (+)NCBIT2T-CHM13v2.0
Rnf224
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39225,124,487 - 25,126,799 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl225,124,488 - 25,126,799 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38225,234,476 - 25,236,787 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl225,234,476 - 25,236,787 (-)Ensemblmm10GRCm38
MGSCv37225,089,996 - 25,092,307 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36225,056,485 - 25,058,796 (-)NCBIMGSCv36mm8
Celera224,962,266 - 24,964,577 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map217.09NCBI
Rnf224
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555135,224,740 - 5,227,395 (+)Ensembl
ChiLan1.0NW_0049555135,224,740 - 5,227,395 (+)NCBIChiLan1.0ChiLan1.0
RNF224
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2112,170,605 - 2,173,091 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan192,172,912 - 2,175,424 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09108,287,236 - 108,289,186 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19137,255,866 - 137,257,947 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9137,255,866 - 137,257,947 (+)EnsemblpanPan2panpan1.1
RNF224
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1948,445,143 - 48,445,632 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl948,445,143 - 48,445,913 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha947,630,642 - 47,632,185 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0949,305,495 - 49,307,038 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl949,306,311 - 49,307,081 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1948,081,896 - 48,083,440 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0948,380,713 - 48,382,256 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0948,427,866 - 48,429,409 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rnf224
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947202,611,509 - 202,612,542 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936669762,545 - 763,078 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF224
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.21314,143,949 - 314,145,877 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RNF224
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112959,725 - 962,962 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660584,344,606 - 4,346,207 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnf224
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624760726,458 - 728,605 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Rnf224
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1511,945,790 - 11,946,260 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rnf224
18 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:38
Count of miRNA genes:38
Interacting mature miRNAs:38
Transcripts:ENSRNOT00000062001
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
10450811Scl73Serum cholesterol level QTL 734.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat
10450808Scl72Serum cholesterol level QTL 724.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
10450806Scl71Serum cholesterol level QTL 715.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)3612543751125437Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3136721849Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3655634751556347Rat
1558657Cm43Cardiac mass QTL 436.63e-08heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31527234860272348Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
5 8 16 63 8 20 6 6 71 26 2 54 33 39 20 7 7

Sequence


Ensembl Acc Id: ENSRNOT00000062001   ⟹   ENSRNOP00000058710
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl38,051,475 - 8,051,945 (-)Ensembl
Rnor_6.0 Ensembl32,455,571 - 2,456,041 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000106003   ⟹   ENSRNOP00000093881
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl328,448,248 - 28,450,576 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111128   ⟹   ENSRNOP00000096761
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl328,448,661 - 28,450,981 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000121850   ⟹   ENSRNOP00000108626
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl328,449,676 - 28,450,981 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000135989   ⟹   ENSRNOP00000104741
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl328,448,749 - 28,450,981 (-)Ensembl
RefSeq Acc Id: NM_001399328   ⟹   NP_001386257
RefSeq Status: INFERRED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8328,448,248 - 28,450,576 (-)NCBI
mRatBN7.238,050,088 - 8,052,416 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001386257 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000093881
  ENSRNOP00000108626.1
Ensembl Acc Id: ENSRNOP00000058710   ⟸   ENSRNOT00000062001
RefSeq Acc Id: NP_001386257   ⟸   NM_001399328
- UniProtKB: D3ZL60 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000104741   ⟸   ENSRNOT00000135989
Ensembl Acc Id: ENSRNOP00000096761   ⟸   ENSRNOT00000111128
Ensembl Acc Id: ENSRNOP00000093881   ⟸   ENSRNOT00000106003
Ensembl Acc Id: ENSRNOP00000108626   ⟸   ENSRNOT00000121850

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZL60-F1-model_v2 AlphaFold D3ZL60 1-156 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564535 AgrOrtholog
BioCyc Gene G2FUF-50472 BioCyc
Ensembl Genes ENSRNOG00000040284 Ensembl
  ENSRNOG00000072192 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000106003 ENTREZGENE
  ENSRNOT00000121850.1 UniProtKB/TrEMBL
NCBI Gene 366004 ENTREZGENE
PhenoGen Rnf224 PhenoGen
RatGTEx ENSRNOG00000040284 RatGTEx
  ENSRNOG00000072192 RatGTEx
UniProt A0ABK0M2F7_RAT UniProtKB/TrEMBL
  D3ZL60 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-06-10 Rnf224  ring finger protein 224  RGD1564535  similar to RiNg Finger protein (rnf-1)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1564535  similar to RiNg Finger protein (rnf-1)   RGD1564535_predicted  similar to RiNg Finger protein (rnf-1) (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1564535_predicted  similar to RiNg Finger protein (rnf-1) (predicted)  LOC366004  similar to RiNg Finger protein (rnf-1)  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC366004  similar to RiNg Finger protein (rnf-1)      Symbol and Name status set to provisional 70820 PROVISIONAL