Gene: Rnf224 (ring finger protein 224) Rattus norvegicus
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Symbol:
Rnf224
Name:
ring finger protein 224
RGD ID:
1564535
Description:
Predicted to enable zinc ion binding activity. Orthologous to human RNF224 (ring finger protein 224); INTERACTS WITH bisphenol A; Cuprizon; 1,2-dichloroethane (ortholog).
Type:
protein-coding
RefSeq Status:
INFERRED
Previously known as:
LOC366004; RGD1564535; similar to RiNg Finger protein (rnf-1)
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
GRCr8 - GRCr8 Assembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 3 28,448,248 - 28,450,576 (-) NCBI GRCr8 GRCr8 GRCr8 GRCr8 Ensembl 3 28,448,248 - 28,450,981 (-) Ensembl GRCr8 mRatBN7.2 3 8,050,088 - 8,052,416 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 3 8,051,475 - 8,051,945 (-) Ensembl mRatBN7.2 UTH_Rnor_SHR_Utx 3 11,154,799 - 11,157,127 (-) NCBI UTH_Rnor_SHR_Utx UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 3 19,741,028 - 19,743,356 (-) NCBI UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 3 17,930,871 - 17,933,199 (-) NCBI UTH_Rnor_WKY_Bbb_1.0 UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 3 2,454,077 - 2,458,186 (-) NCBI Rnor_6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 3 2,455,571 - 2,456,041 (-) Ensembl rn6 Rnor6.0 Rnor_5.0 3 2,435,362 - 2,437,452 (-) NCBI Rnor_5.0 Rnor_5.0 rn5 RGSC_v3.4 3 3,400,680 - 3,401,150 (-) NCBI RGSC_v3.4 RGSC_v3.4 rn4 Celera 3 2,876,616 - 2,880,682 (-) NCBI Celera Cytogenetic Map 3 p13 NCBI
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References
Genomics
Comparative Map Data
Rnf224 (Rattus norvegicus - Norway rat)
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 3 28,448,248 - 28,450,576 (-) NCBI GRCr8 GRCr8 GRCr8 GRCr8 Ensembl 3 28,448,248 - 28,450,981 (-) Ensembl GRCr8 mRatBN7.2 3 8,050,088 - 8,052,416 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 3 8,051,475 - 8,051,945 (-) Ensembl mRatBN7.2 UTH_Rnor_SHR_Utx 3 11,154,799 - 11,157,127 (-) NCBI UTH_Rnor_SHR_Utx UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 3 19,741,028 - 19,743,356 (-) NCBI UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 3 17,930,871 - 17,933,199 (-) NCBI UTH_Rnor_WKY_Bbb_1.0 UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 3 2,454,077 - 2,458,186 (-) NCBI Rnor_6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 3 2,455,571 - 2,456,041 (-) Ensembl rn6 Rnor6.0 Rnor_5.0 3 2,435,362 - 2,437,452 (-) NCBI Rnor_5.0 Rnor_5.0 rn5 RGSC_v3.4 3 3,400,680 - 3,401,150 (-) NCBI RGSC_v3.4 RGSC_v3.4 rn4 Celera 3 2,876,616 - 2,880,682 (-) NCBI Celera Cytogenetic Map 3 p13 NCBI
RNF224 (Homo sapiens - human)
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 9 137,227,502 - 137,229,640 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 9 137,226,908 - 137,229,640 (+) Ensembl hg38 GRCh38 GRCh37 9 140,121,954 - 140,124,092 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 9 139,241,972 - 139,243,359 (+) NCBI Build 36 Build 36 hg18 NCBI36 Cytogenetic Map 9 q34.3 NCBI HuRef 9 109,581,280 - 109,583,416 (+) NCBI HuRef CHM1_1 9 140,270,752 - 140,272,824 (+) NCBI CHM1_1 T2T-CHM13v2.0 9 149,465,171 - 149,467,309 (+) NCBI T2T-CHM13v2.0
Rnf224 (Mus musculus - house mouse)
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 2 25,124,487 - 25,126,799 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 2 25,124,488 - 25,126,799 (-) Ensembl GRCm39 Ensembl GRCm39 GRCm38 2 25,234,476 - 25,236,787 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 2 25,234,476 - 25,236,787 (-) Ensembl mm10 GRCm38 MGSCv37 2 25,089,996 - 25,092,307 (-) NCBI MGSCv37 MGSCv37 mm9 NCBIm37 MGSCv36 2 25,056,485 - 25,058,796 (-) NCBI MGSCv36 mm8 Celera 2 24,962,266 - 24,964,577 (-) NCBI Celera Cytogenetic Map 2 A3 NCBI cM Map 2 17.09 NCBI
Rnf224 (Chinchilla lanigera - long-tailed chinchilla)
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955513 5,224,740 - 5,227,395 (+) Ensembl ChiLan1.0 NW_004955513 5,224,740 - 5,227,395 (+) NCBI ChiLan1.0 ChiLan1.0
RNF224 (Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 11 2,170,605 - 2,173,091 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 9 2,172,912 - 2,175,424 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 9 108,287,236 - 108,289,186 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 9 137,255,866 - 137,257,947 (+) NCBI PanPan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 9 137,255,866 - 137,257,947 (+) Ensembl panPan2 panpan1.1
RNF224 (Canis lupus familiaris - dog)
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 9 48,445,143 - 48,445,632 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 9 48,445,143 - 48,445,913 (-) Ensembl canFam3 CanFam3.1 Dog10K_Boxer_Tasha 9 47,630,642 - 47,632,185 (-) NCBI Dog10K_Boxer_Tasha Dog10K_Boxer_Tasha ROS_Cfam_1.0 9 49,305,495 - 49,307,038 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 9 49,306,311 - 49,307,081 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 9 48,081,896 - 48,083,440 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 9 48,380,713 - 48,382,256 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 9 48,427,866 - 48,429,409 (-) NCBI UU_Cfam_GSD_1.0 UU_Cfam_GSD_1.0
Rnf224 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
RNF224 (Sus scrofa - pig)
Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa10.2 1 314,143,949 - 314,145,877 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
RNF224 (Chlorocebus sabaeus - green monkey)
Rnf224 (Heterocephalus glaber - naked mole-rat)
Rnf224 (Rattus rattus - black rat)
miRNA Target Status (No longer updated)
Predicted Target Of
Count of predictions: 38 Count of miRNA genes: 38 Interacting mature miRNAs: 38 Transcripts: ENSRNOT00000062001 Prediction methods: Miranda, Rnahybrid Result types: miRGate_prediction