RNF224 (ring finger protein 224) - Rat Genome Database

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Gene: RNF224 (ring finger protein 224) Sus scrofa
Analyze
Symbol: RNF224
Name: ring finger protein 224
RGD ID: 14106360
Description: ENCODES a protein that exhibits metal ion binding (inferred); ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); developmental and epileptic encephalopathy 14 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.21314,143,949 - 314,145,877 (-)NCBISscrofa10.2Sscrofa10.2susScr3


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
RNF224
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.21314,143,949 - 314,145,877 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RNF224
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389137,227,502 - 137,229,640 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9137,227,502 - 137,229,640 (+)EnsemblGRCh38hg38GRCh38
GRCh379140,121,954 - 140,124,092 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369139,241,972 - 139,243,359 (+)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map9q34.3NCBI
HuRef9109,581,280 - 109,583,416 (+)NCBIHuRef
CHM1_19140,270,752 - 140,272,824 (+)NCBICHM1_1
T2T-CHM13v2.09149,465,171 - 149,467,309 (+)NCBIT2T-CHM13v2.0
Rnf224
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39225,124,487 - 25,126,799 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl225,124,488 - 25,126,799 (-)EnsemblGRCm39 Ensembl
GRCm38225,234,476 - 25,236,787 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl225,234,476 - 25,236,787 (-)EnsemblGRCm38mm10GRCm38
MGSCv37225,089,996 - 25,092,307 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36225,056,485 - 25,058,796 (-)NCBIMGSCv36mm8
Celera224,962,266 - 24,964,577 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map217.09NCBI
Rnf224
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8328,448,248 - 28,450,576 (-)NCBIGRCr8
mRatBN7.238,050,088 - 8,052,416 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl38,051,475 - 8,051,945 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx311,154,799 - 11,157,127 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0319,741,028 - 19,743,356 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0317,930,871 - 17,933,199 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.032,454,077 - 2,458,186 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl32,455,571 - 2,456,041 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.032,435,362 - 2,437,452 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.433,400,680 - 3,401,150 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera32,876,616 - 2,880,682 (-)NCBICelera
Cytogenetic Map3p13NCBI
Rnf224
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555135,224,740 - 5,227,395 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555135,224,740 - 5,227,395 (+)NCBIChiLan1.0ChiLan1.0
RNF224
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2112,170,605 - 2,173,091 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan192,172,912 - 2,175,424 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09108,287,236 - 108,289,186 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19137,255,866 - 137,257,947 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9137,255,866 - 137,257,947 (+)Ensemblpanpan1.1panPan2
RNF224
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1948,445,143 - 48,445,632 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl948,445,143 - 48,445,913 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha947,630,642 - 47,632,185 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0949,305,495 - 49,307,038 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl949,306,311 - 49,307,081 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1948,081,896 - 48,083,440 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0948,380,713 - 48,382,256 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0948,427,866 - 48,429,409 (-)NCBIUU_Cfam_GSD_1.0
Rnf224
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947202,611,509 - 202,612,542 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936669762,545 - 763,078 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF224
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112959,725 - 962,962 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660584,344,606 - 4,346,207 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnf224
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624760726,458 - 728,605 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system hemolymphoid system nervous system renal system reproductive system respiratory system
High
Medium
Low 1 3 2 1 1
Below cutoff 1 4

Sequence


Protein Sequences
Protein RefSeqs XP_020936853 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00005043475.1
Protein Domains
RING-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00005043503 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00005069828.1 UniProtKB/TrEMBL
Gene3D-CATH Zinc/RING finger domain, C3HC4 (zinc finger) UniProtKB/TrEMBL
InterPro Znf-RING_euk UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
NCBI Gene RNF224 ENTREZGENE
PANTHER RING FINGER PROTEIN 224 UniProtKB/TrEMBL
  RING FINGER PROTEIN 224 UniProtKB/TrEMBL
Pfam zf-RING_UBOX UniProtKB/TrEMBL
PROSITE ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART RING UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
UniProt A0A8D0M1V9 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:92386 ENTREZGENE