Slc10a7 (solute carrier family 10, member 7) - Rat Genome Database

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Gene: Slc10a7 (solute carrier family 10, member 7) Rattus norvegicus
Analyze
Symbol: Slc10a7
Name: solute carrier family 10, member 7
RGD ID: 1564388
Description: Predicted to enable bile acid transmembrane transporter activity. Predicted to be involved in several processes, including glycoprotein transport; heparin biosynthetic process; and intracellular calcium ion homeostasis. Located in endoplasmic reticulum and plasma membrane. Orthologous to human SLC10A7 (solute carrier family 10 member 7); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,5-hexanedione; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Na(+)/bile acid cotransporter 7; P7; sodium/bile acid cotransporter 7; solute carrier family 10 (sodium/bile acid cotransporter family), member 7; solute carrier family 10 (sodium/bile acid cotransporter family), member 7-like; solute carrier family 10 member 7
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81946,087,440 - 46,311,753 (-)NCBIGRCr8
mRatBN7.21929,183,143 - 29,407,470 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1929,183,155 - 29,407,464 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1936,033,499 - 36,254,917 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01936,687,370 - 36,908,789 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01938,930,343 - 39,157,900 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01932,857,984 - 33,081,359 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1932,855,343 - 33,080,998 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01943,751,269 - 43,972,967 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41931,029,928 - 31,074,346 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1928,685,274 - 28,905,878 (-)NCBICelera
Cytogenetic Map19q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Molecular and phylogenetic characterization of a novel putative membrane transporter (SLC10A7), conserved in vertebrates and bacteria. Godoy JR, etal., Eur J Cell Biol. 2007 Aug;86(8):445-60. doi: 10.1016/j.ejcb.2007.06.001. Epub 2007 Jul 12.
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:22029531   PMID:29878199   PMID:30082715  


Genomics

Comparative Map Data
Slc10a7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81946,087,440 - 46,311,753 (-)NCBIGRCr8
mRatBN7.21929,183,143 - 29,407,470 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1929,183,155 - 29,407,464 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1936,033,499 - 36,254,917 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01936,687,370 - 36,908,789 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01938,930,343 - 39,157,900 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01932,857,984 - 33,081,359 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1932,855,343 - 33,080,998 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01943,751,269 - 43,972,967 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41931,029,928 - 31,074,346 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1928,685,274 - 28,905,878 (-)NCBICelera
Cytogenetic Map19q11NCBI
SLC10A7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384146,253,981 - 146,521,940 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4146,253,975 - 146,522,372 (-)EnsemblGRCh38hg38GRCh38
GRCh374147,175,133 - 147,443,092 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364147,395,627 - 147,662,535 (-)NCBINCBI36Build 36hg18NCBI36
Celera4144,494,604 - 144,763,675 (-)NCBICelera
Cytogenetic Map4q31.22NCBI
HuRef4142,895,956 - 143,170,355 (-)NCBIHuRef
CHM1_14147,152,425 - 147,420,419 (-)NCBICHM1_1
T2T-CHM13v2.04149,569,961 - 149,845,644 (-)NCBIT2T-CHM13v2.0
Slc10a7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39879,235,957 - 79,460,641 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl879,235,975 - 79,460,632 (+)EnsemblGRCm39 Ensembl
GRCm38878,509,323 - 78,734,012 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl878,509,346 - 78,734,003 (+)EnsemblGRCm38mm10GRCm38
MGSCv37881,033,234 - 81,257,904 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36881,405,647 - 81,627,710 (+)NCBIMGSCv36mm8
Celera882,785,960 - 83,011,085 (+)NCBICelera
Cytogenetic Map8C1NCBI
cM Map837.04NCBI
Slc10a7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554281,999,280 - 2,250,234 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554281,999,341 - 2,250,201 (-)NCBIChiLan1.0ChiLan1.0
SLC10A7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23144,125,704 - 144,390,616 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14144,490,661 - 144,757,573 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04138,592,266 - 138,857,833 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14150,249,964 - 150,511,066 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4150,251,966 - 150,510,812 (-)Ensemblpanpan1.1panPan2
SLC10A7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11544,718,085 - 44,957,787 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1544,720,629 - 44,957,495 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1545,111,103 - 45,353,346 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01545,386,941 - 45,630,793 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1545,388,313 - 45,631,382 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11544,659,864 - 44,903,019 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01544,746,901 - 44,995,375 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01545,017,296 - 45,260,332 (-)NCBIUU_Cfam_GSD_1.0
Slc10a7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530145,355,452 - 45,601,169 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365352,792,293 - 3,038,512 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365352,792,576 - 3,038,504 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC10A7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl882,115,056 - 82,355,655 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1882,115,057 - 82,355,660 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2887,489,210 - 87,651,904 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.2887,282,708 - 87,303,582 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC10A7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1792,798,344 - 93,052,737 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603772,479,081 - 72,734,917 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc10a7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248535,113,153 - 5,365,339 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248535,110,729 - 5,365,312 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc10a7
1616 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:137
Count of miRNA genes:109
Interacting mature miRNAs:118
Transcripts:ENSRNOT00000015985
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549847Bss8Bone structure and strength QTL 84lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)19131963836Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
61328Eae8Experimental allergic encephalomyelitis QTL 84nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)192481604133061905Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
1558656Prcs1Prostate cancer susceptibility QTL 15prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)191511459834521833Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19136824771Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)191560502346559041Rat
1549835Tcas7Tongue tumor susceptibility QTL 70.001tongue integrity trait (VT:0010553)squamous cell carcinoma of the head and neck tumor number (CMO:0001876)192481797839654489Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
1354633Bw28Body weight QTL 286.04body mass (VT:0001259)body weight (CMO:0000012)192753020737947399Rat
724565Tcas5Tongue tumor susceptibility QTL 510.04tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)19997775339654489Rat
61407Scl12Serum cholesterol level QTL 120.001blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)191392640130303727Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191082797043544039Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19136824771Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
1354607Gmadr1Adrenal mass QTL 15.83adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)192753020737947399Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
1354600Salc2Saline consumption QTL 29.910.001drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)192753020737947399Rat

Markers in Region
D19Rat29  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21929,322,490 - 29,322,676 (+)MAPPERmRatBN7.2
Rnor_6.01932,994,392 - 32,994,577NCBIRnor6.0
Rnor_5.01943,887,287 - 43,887,472UniSTSRnor5.0
RGSC_v3.41931,224,173 - 31,224,359RGDRGSC3.4
RGSC_v3.41931,224,174 - 31,224,359UniSTSRGSC3.4
RGSC_v3.11931,228,888 - 31,229,347RGD
Celera1928,821,821 - 28,822,006UniSTS
RH 2.0 Map19345.1RGD
SHRSP x BN Map1922.4798RGD
Cytogenetic Map19q11UniSTS
D19Got116  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21929,406,060 - 29,406,201 (+)MAPPERmRatBN7.2
Rnor_6.01933,079,592 - 33,079,732NCBIRnor6.0
Rnor_5.01943,971,787 - 43,971,927UniSTSRnor5.0
RGSC_v3.41931,308,436 - 31,308,576UniSTSRGSC3.4
Celera1928,904,698 - 28,904,838UniSTS
Cytogenetic Map19q11UniSTS
RH133626  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21929,226,166 - 29,226,374 (+)MAPPERmRatBN7.2
Rnor_6.01932,897,972 - 32,898,179NCBIRnor6.0
Rnor_5.01943,791,257 - 43,791,464UniSTSRnor5.0
RGSC_v3.41931,128,443 - 31,128,650UniSTSRGSC3.4
RGSC_v3.41931,033,494 - 31,033,701UniSTSRGSC3.4
Celera1928,725,491 - 28,725,698UniSTS
RH 3.4 Map19222.29UniSTS
Cytogenetic Map19q11UniSTS
AW534219  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21929,334,797 - 29,335,003 (+)MAPPERmRatBN7.2
Rnor_6.01933,006,738 - 33,006,943NCBIRnor6.0
Rnor_5.01943,898,933 - 43,899,138UniSTSRnor5.0
RGSC_v3.41931,237,178 - 31,237,383UniSTSRGSC3.4
Celera1928,833,994 - 28,834,199UniSTS
RH 3.4 Map19221.3UniSTS
Cytogenetic Map19q11UniSTS
AU047602  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.210630,276 - 630,875 (+)MAPPERmRatBN7.2
mRatBN7.21929,362,322 - 29,362,552 (+)MAPPERmRatBN7.2
Rnor_6.01933,035,230 - 33,035,459NCBIRnor6.0
Rnor_6.010647,530 - 648,128NCBIRnor6.0
Rnor_5.01943,927,425 - 43,927,654UniSTSRnor5.0
Rnor_5.01011,330,226 - 11,330,824UniSTSRnor5.0
RGSC_v3.410550,874 - 551,472UniSTSRGSC3.4
RGSC_v3.41931,264,701 - 31,264,930UniSTSRGSC3.4
Celera1928,861,530 - 28,861,755UniSTS
Celera1011,221,486 - 11,222,084UniSTS
Cytogenetic Map19q11UniSTS
Cytogenetic Map10q11UniSTS
RH137673  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21929,217,498 - 29,217,713 (+)MAPPERmRatBN7.2
Rnor_6.01932,889,304 - 32,889,518NCBIRnor6.0
Rnor_5.01943,782,589 - 43,782,803UniSTSRnor5.0
RGSC_v3.41931,042,155 - 31,042,369UniSTSRGSC3.4
Celera1928,716,823 - 28,717,037UniSTS
Cytogenetic Map19q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000015985   ⟹   ENSRNOP00000015985
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1929,183,155 - 29,407,433 (-)Ensembl
Rnor_6.0 Ensembl1932,855,343 - 33,080,998 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000097147   ⟹   ENSRNOP00000077134
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1929,183,155 - 29,407,464 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116688   ⟹   ENSRNOP00000093108
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1929,183,155 - 29,407,464 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116809   ⟹   ENSRNOP00000080831
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1929,183,155 - 29,407,464 (-)Ensembl
RefSeq Acc Id: NM_001010948   ⟹   NP_001010948
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81946,087,440 - 46,311,753 (-)NCBI
mRatBN7.21929,183,149 - 29,407,470 (-)NCBI
Rnor_6.01932,857,984 - 33,080,772 (-)NCBI
Rnor_5.01943,751,269 - 43,972,967 (-)NCBI
RGSC_v3.41931,029,928 - 31,074,346 (+)RGD
Celera1928,685,274 - 28,905,878 (-)RGD
Sequence:
RefSeq Acc Id: XM_039097585   ⟹   XP_038953513
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81946,087,440 - 46,311,742 (-)NCBI
mRatBN7.21929,183,143 - 29,407,470 (-)NCBI
RefSeq Acc Id: XM_039097586   ⟹   XP_038953514
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81946,087,440 - 46,311,742 (-)NCBI
mRatBN7.21929,183,143 - 29,407,470 (-)NCBI
RefSeq Acc Id: XM_063277889   ⟹   XP_063133959
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81946,095,579 - 46,311,742 (-)NCBI
RefSeq Acc Id: XM_063277890   ⟹   XP_063133960
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81946,092,572 - 46,311,742 (-)NCBI
RefSeq Acc Id: XM_063277891   ⟹   XP_063133961
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81946,289,958 - 46,311,747 (-)NCBI
RefSeq Acc Id: NP_001010948   ⟸   NM_001010948
- UniProtKB: Q5PT50 (UniProtKB/Swiss-Prot),   A6IYJ4 (UniProtKB/TrEMBL),   A0A8L2Q8N4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000015985   ⟸   ENSRNOT00000015985
RefSeq Acc Id: XP_038953514   ⟸   XM_039097586
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038953513   ⟸   XM_039097585
- Peptide Label: isoform X1
- UniProtKB: A0A8L2Q8N4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000077134   ⟸   ENSRNOT00000097147
Ensembl Acc Id: ENSRNOP00000080831   ⟸   ENSRNOT00000116809
Ensembl Acc Id: ENSRNOP00000093108   ⟸   ENSRNOT00000116688
RefSeq Acc Id: XP_063133960   ⟸   XM_063277890
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063133959   ⟸   XM_063277889
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063133961   ⟸   XM_063277891
- Peptide Label: isoform X5

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5PT50-F1-model_v2 AlphaFold Q5PT50 1-340 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701055
Promoter ID:EPDNEW_R11578
Type:initiation region
Name:Slc10a7_1
Description:solute carrier family 10, member 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01933,080,995 - 33,081,055EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564388 AgrOrtholog
BioCyc Gene G2FUF-5931 BioCyc
Ensembl Genes ENSRNOG00000011991 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055007986 UniProtKB/Swiss-Prot
  ENSRNOG00060012048 UniProtKB/Swiss-Prot
  ENSRNOG00065009598 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000015985.8 UniProtKB/TrEMBL
  ENSRNOT00000097147.1 UniProtKB/Swiss-Prot
  ENSRNOT00000116688.1 UniProtKB/TrEMBL
  ENSRNOT00000116809.1 UniProtKB/TrEMBL
  ENSRNOT00055013453 UniProtKB/Swiss-Prot
  ENSRNOT00060020442 UniProtKB/Swiss-Prot
  ENSRNOT00065015390 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.1530.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Na+/solute_symporter_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Put_Na-Bile_cotransptr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:291942 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 291942 ENTREZGENE
PANTHER PTHR18640 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SODIUM/BILE ACID COTRANSPORTER 7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SBF_like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc10a7 PhenoGen
PIRSF UCP026166 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011991 RatGTEx
  ENSRNOG00055007986 RatGTEx
  ENSRNOG00060012048 RatGTEx
  ENSRNOG00065009598 RatGTEx
UniProt A0A8I5ZRL6_RAT UniProtKB/TrEMBL
  A0A8I6AJM8_RAT UniProtKB/TrEMBL
  A0A8L2Q8N4 ENTREZGENE, UniProtKB/TrEMBL
  A6IYJ4 ENTREZGENE, UniProtKB/TrEMBL
  NTCP7_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-02 Slc10a7  solute carrier family 10, member 7  Slc10a7  solute carrier family 10 (sodium/bile acid cotransporter family), member 7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-05-24 Slc10a7  solute carrier family 10 (sodium/bile acid cotransporter family), member 7  LOC100361333  solute carrier family 10 (sodium/bile acid cotransporter family), member 7-like  Data merged from RGD:2320332 1643240 APPROVED
2010-05-05 LOC100361333  solute carrier family 10 (sodium/bile acid cotransporter family), member 7-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-03-06 Slc10a7  solute carrier family 10 (sodium/bile acid cotransporter family), member 7  P7  P7 protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 P7  P7 protein      Symbol and Name status set to provisional 70820 PROVISIONAL