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Gene: Igsf23 (immunoglobulin superfamily, member 23) Rattus norvegicus

Analyze

Symbol:

Igsf23

Name:

immunoglobulin superfamily, member 23

RGD ID:

1564357

Description:

Predicted to be involved in osteoclast differentiation. Predicted to be located in plasma membrane. Orthologous to human IGSF23 (immunoglobulin superfamily member 23); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

immunoglobulin superfamily member 23; LOC502306; mCG54481-like; RGD1564357

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	88,719,000 - 88,738,391 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	88,719,401 - 88,746,219 (-)	Ensembl				GRCr8
mRatBN7.2	1	79,591,059 - 79,606,323 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	79,592,088 - 79,610,438 (-)	Ensembl				mRatBN7.2
Rnor_6.0	1	80,850,783 - 80,869,481 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	80,852,528 - 80,864,846 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	82,114,859 - 82,129,942 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	79,242,061 - 79,258,888 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	74,048,848 - 74,067,340 (-)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

4,4'-sulfonyldiphenol (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (EXP)

chromium(6+) (ISO)

dichloroacetic acid (ISO)

endosulfan (EXP)

gentamycin (EXP)

Lasiocarpine (ISO)

lipopolysaccharide (ISO)

O-methyleugenol (ISO)

okadaic acid (ISO)

paracetamol (EXP)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

streptozocin (ISO)

tributylstannane (ISO)

trichloroethene (EXP)

urethane (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

osteoclast differentiation (ISO)

Cellular Component

plasma membrane (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Igsf23
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	88,719,000 - 88,738,391 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	88,719,401 - 88,746,219 (-)	Ensembl				GRCr8
mRatBN7.2	1	79,591,059 - 79,606,323 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	79,592,088 - 79,610,438 (-)	Ensembl				mRatBN7.2
Rnor_6.0	1	80,850,783 - 80,869,481 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	80,852,528 - 80,864,846 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	82,114,859 - 82,129,942 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	79,242,061 - 79,258,888 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	74,048,848 - 74,067,340 (-)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

IGSF23
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	44,613,563 - 44,636,781 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	44,613,563 - 44,636,787 (+)	Ensembl			hg38	GRCh38
GRCh37	19	45,116,873 - 45,140,081 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	49,808,796 - 49,830,632 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	19	41,920,994 - 41,944,130 (+)	NCBI		Celera
Cytogenetic Map	19	q13.31	NCBI
HuRef	19	41,549,180 - 41,572,331 (+)	NCBI		HuRef
CHM1_1	19	45,119,580 - 45,142,731 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	47,438,308 - 47,461,513 (+)	NCBI		T2T-CHM13v2.0

Igsf23
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	19,671,230 - 19,687,579 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	19,671,230 - 19,684,681 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	7	19,937,305 - 19,953,654 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	19,937,305 - 19,950,756 (-)	Ensembl			mm10	GRCm38
MGSCv37	7	20,522,654 - 20,536,092 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	7	19,095,827 - 19,112,176 (-)	NCBI		MGSCv36	mm8
Celera	7	17,343,908 - 17,357,349 (-)	NCBI		Celera
Cytogenetic Map	7	A3	NCBI
cM Map	7	9.95	NCBI

IGSF23
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	50,773,200 - 50,789,230 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	52,645,192 - 52,668,503 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	41,570,393 - 41,585,036 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	50,166,473 - 50,189,982 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	50,166,473 - 50,188,638 (+)	Ensembl			panPan2	panpan1.1

IGSF23
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	110,723,496 - 110,735,913 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	110,723,514 - 110,736,730 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	110,204,545 - 110,227,845 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	111,285,838 - 111,309,155 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	111,287,712 - 111,300,224 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	110,927,473 - 110,949,509 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	110,565,442 - 110,586,717 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	111,435,149 - 111,456,386 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

IGSF23
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	6	51,133,074 - 51,150,820 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	47,048,765 - 47,066,269 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

IGSF23
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	38,093,614 - 38,120,993 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666073	17,623,496 - 17,684,829 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Igsf23
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	170,670,382 - 170,683,803 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Igsf23
123 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	132
Count of miRNA genes:	98
Interacting mature miRNAs:	106
Transcripts:	ENSRNOT00000026006, ENSRNOT00000067615, ENSRNOT00000074412
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578649	Bmd8	Bone mineral density QTL 8	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	51940904	101229020	Rat
1582234	Gluco18	Glucose level QTL 18	3.4	0.0003	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	87889942	132889942	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	51941022	208479811	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	39728272	132889942	Rat
4889929	Bss87	Bone structure and strength QTL 87	6.7		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	46302615	91302615	Rat
2313062	Bmd73	Bone mineral density QTL 73	3.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	46302615	91302615	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	51940904	168768703	Rat
2313065	Bss67	Bone structure and strength QTL 67	3.1	0.0001	tibia area (VT:1000281)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
1331800	Scl25	Serum cholesterol level QTL 25	3.013		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	87785026	142582336	Rat
7421628	Bp361	Blood pressure QTL 361		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	83019780	128019780	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	66404680	111404680	Rat
2313069	Bss68	Bone structure and strength QTL 68	2.9	0.0001	tibia size trait (VT:0100001)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34184556	172281316	Rat
2313075	Bss66	Bone structure and strength QTL 66	3.4	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	46302615	91302615	Rat
631512	Scl6	Serum cholesterol level QTL 6	9.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	81269860	99645535	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	66009857	160501508	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34565911	208798288	Rat
2313077	Bss69	Bone structure and strength QTL 69	3.5	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	46302615	91302615	Rat
1302788	Scl19	Serum cholesterol QTL 19	4.6	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	66400974	132889942	Rat
1549903	Bp267	Blood pressure QTL 267			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	84107164	115183752	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	51511344	153680016	Rat
61342	Bp27	Blood pressure QTL 27	3.4	0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	65405637	96805205	Rat
4889962	Bss94	Bone structure and strength QTL 94	3.8		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	51909206	91302615	Rat
1358192	Ept13	Estrogen-induced pituitary tumorigenesis QTL 13	3.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	1	86622262	131622262	Rat
6903308	Scl36	Serum cholesterol QTL 36	2	0.0125	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	58769992	103769992	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	66077886	111077886	Rat
2313092	Bmd72	Bone mineral density QTL 72	2.5	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	46302615	91302615	Rat
2313097	Bss70	Bone structure and strength QTL 70	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
10054135	Gmadr2	Adrenal mass QTL 2	1.97	0.0129	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	86993904	131993904	Rat
152025249	Scl82	Serum cholesterol level QTL 82	4.77		blood cholesterol amount (VT:0000180)		1	52891222	109116986	Rat
7411712	Strs4	Sensitivity to stroke QTL 4	8.7		cerebrum integrity trait (VT:0010549)	percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)	1	87558587	132558587	Rat
4889919	Bss86	Bone structure and strength QTL 86	4.1		tibia area (VT:1000281)	tibia midshaft total cross-sectional area (CMO:0001715)	1	46302615	91302615	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	5	18	68	46	46	15	83	15	6	244	131	11	42	79	89	31	2	2

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001432475	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006223121	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228504	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590641	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590644	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000074412 ⟹ ENSRNOP00000066148

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	88,719,863 - 88,746,219 (-)	Ensembl
mRatBN7.2 Ensembl	1	79,592,088 - 79,610,438 (-)	Ensembl
Rnor_6.0 Ensembl	1	80,852,528 - 80,864,846 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000130529 ⟹ ENSRNOP00000112819

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	88,719,401 - 88,738,441 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000136906 ⟹ ENSRNOP00000111938

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	88,719,401 - 88,734,157 (-)	Ensembl

RefSeq Acc Id:

XM_017590007 ⟹ XP_017445496

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	88,719,000 - 88,738,391 (-)	NCBI
mRatBN7.2	1	79,591,059 - 79,606,323 (-)	NCBI
Rnor_6.0	1	80,850,783 - 80,869,481 (-)	NCBI

Sequence:

show sequence

TTGAAGTGTTTTCCTTTGCTAAAGAGGGTAATTGGCAGCGTCCTCTGCAAGAGTCGAATTCCCA
ACCTCGTTGCAATGTCTGTGCCAACCCAGATGGTTGAGGAGTTAAAAAACCATCCGGGGCTAGG
AATGAAGCCAGAATCTGGCACCCTCCAGAGAAGAGCTGGGCTCGGAGCTGACAGATGAGAACCT
GGCAGTGAAGCCAAGAGGTGGGTCCCAGCTGCCTCCTATCATGTTGACCTTTGGCCTCAGTACC
CTCTGACGAGGGTGATGGGTGGGGCTATACATAATGGCACATCCTTCTTCCTCAGCATTCAGTC
TGCTCTGGCTATGGAGGGCGGGGACCATAGAATTCTCTATGCTGAAGACATAGGTTAGCCCTAT
CCTCTCCCACATAGAGGTGCTGGAGGAAGAGGCTGAGGGGGGACTCGTGCAAGGGCAAGGGCAG
AGACCCAGCCTGTGGAGGAAGAGTGTGGCTGGGGCCCCATAAAAGACCTGCGTGTCCTTGAGGT
TCTTCTACCCAGAATTCCCTAAGAGGTCCAAGGACAGAGGACGACATGGACTGTCTTCCGGACT
CAGGCCGTGGCCTCATTCCTGCCTGGAAGACGCTTCTACTAACAGGTGCCCTGCTTGCCTCCTG
CACCTGCTCTGCCACCTCCAAGCCACCCCACTTGGAAGGAGCTGGCCCCCACCTGCCTGACCCC
AGAGCCCCTGAAGGAGTTCTCAGCACTTCTTGGTTCCGAGAGTTTGAAGCCCAGCCGCCAGCCT
TGTCCCCTCTCAAGGGCCTCCGGGGACTTTCTCACACTAGCCAAGAGGTGCTACACACTGAAGA
CAGCTTGGTCATCAGGGATGTGTCAGCTCAAAACTCAGAGAGCCACGCTGAGGTTCTGGACGCC
GTCAGGTCCCATAGGACTGAAGTCAAGAACAGCGCCAGCCTGGTCCCACTGGTGACCTTCCCAG
AGGCTTTGAAGGGCACAGTCTACAGTGACCTTAACTACTCTGTGATCCTGCAGTGGAGGGCGAT
CATGGACCCAGAGCCTATCCTGAGGTGGACCTTCAATGGGAAGCCATGCGGGACTGGGGACAAG
CTATTTATCCGGCGACTGTCCCAAAATCAGCTGGGCACGTATCTGTGTATAGCCAAGAACACAA
ACGAAGAGCTGGTATCTGAGCCAGTGACCGTCTCCTTGAGCCAAGACAATGTGGCTCCCACAGT
TCCGGATCCCACAGTTGCCTATCCCACGACGTCAAACGACTACATGGCGCTCTCAGGAGGACCC
GCCATCGTCCTCATCGTAGCAGCCACACTGGGAGGCCTAGCACTGATCGGAGCTAGCTGCTTCT
ATTTAGTTCGGGAAATTAAGAACACATAGAGATAAGGAATGTGCAGCTGAGCCATGAGCGCATA
AATCTCTACCCAAAGCCGATCCCAGGACAGGAGTCTCAGAAAAGGACATGGCCCTCGTCAAGCT
CCTCTTCCCTCCCAGTTGTCCCCATGATGTCCCCAGCTAAACAAAGCATTTTCTGTCCTCCTGC
CCACCGCCAGCAACCCATCTTCACAGCCCACCTACTCCTGGAACACTGTCTCTATTCTTCAGCC
TCACCAAACAAAAGAAACTTCTTGGCTTAGCTGAAGGGAGGAGTGGGGTAACGGAGGAAGAATT
TAACAGAAGTCATGAAGATTTCCCAGAGTCCTAGCGTGTATCTGTCAGCCTCCGCATGGTAATA
AATTGCCTCTGGAACTCAGCAGCGTGAAACAACAGTCATTTGTGCAGATTGTAATTCTGAGGCT
TGGGCTGCAAGTAGGGCTCGGCAGGAGGGGGCTTGCTGCAGCATCTGTGGTCCAGTGGCTGTCT
GGAGGGGTAGCATCAGTGGGGACAGCTGGCACTCCTTGGTGTCCTCTCTCAAGCTCAGAAAGGC
AGACCTCAACTGGTCAAGGCCTCTGGCTCAGAAAGAAGACCATCATTGTCTCCCCATTGGTTGG
AGGGAGTCACGTGGCCGGCCCAGTTCCAGAGGTGGAGGAGTTGGCTCCGCCTCTTCCTGCTCTC
AATTCCCTCCTTATTACAAACTTGCTTTCCAGGAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001419404	(Get FASTA)	NCBI Sequence Viewer
	XP_017445496	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM08125	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000066148.4
	ENSRNOP00000111938
	ENSRNOP00000111938.1
	ENSRNOP00000112819.1

RefSeq Acc Id:

XP_017445496 ⟸ XM_017590007

- UniProtKB:

M0R9H9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDCLPDSGRGLIPAWKTLLLTGALLASCTCSATSKPPHLEGAGPHLPDPRAPEGVLSTSWFREF
EAQPPALSPLKGLRGLSHTSQEVLHTEDSLVIRDVSAQNSESHAEVLDAVRSHRTEVKNSASLV
PLVTFPEALKGTVYSDLNYSVILQWRAIMDPEPILRWTFNGKPCGTGDKLFIRRLSQNQLGTYL
CIAKNTNEELVSEPVTVSLSQDNVAPTVPDPTVAYPTTSNDYMALSGGPAIVLIVAATLGGLAL
IGASCFYLVREIKNT

hide sequence

Ensembl Acc Id:

ENSRNOP00000066148 ⟸ ENSRNOT00000074412

Ensembl Acc Id:

ENSRNOP00000111938 ⟸ ENSRNOT00000136906

Ensembl Acc Id:

ENSRNOP00000112819 ⟸ ENSRNOT00000130529

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-M0R9H9-F1-model_v2	AlphaFold	M0R9H9	1-238	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13689796

Promoter ID:

EPDNEW_R310

Type:

multiple initiation site

Name:

Igsf23_1

Description:

immunoglobulin superfamily, member 23

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	80,864,856 - 80,864,916	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1564357	AgrOrtholog
BioCyc Gene	G2FUF-60479	BioCyc
Ensembl Genes	ENSRNOG00000024630	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000074412.5	UniProtKB/TrEMBL
	ENSRNOT00000130529.1	UniProtKB/TrEMBL
	ENSRNOT00000136906	ENTREZGENE
	ENSRNOT00000136906.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
InterPro	Ig-like_dom	UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
KEGG Report	rno:502306	UniProtKB/TrEMBL
NCBI Gene	502306	ENTREZGENE
PhenoGen	Igsf23	PhenoGen
PROSITE	IG_LIKE	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000024630	RatGTEx
Superfamily-SCOP	SSF48726	UniProtKB/TrEMBL
UniProt	A0ABK0M151_RAT	UniProtKB/TrEMBL
	A0ABK0M8R5_RAT	UniProtKB/TrEMBL
	M0R9H9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-05-24	Igsf23	immunoglobulin superfamily, member 23	LOC100363841	mCG54481-like	Data merged from RGD:2322214	1643240	APPROVED
2011-06-10	Igsf23	immunoglobulin superfamily, member 23	RGD1564357	RGD1564357	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-05-06	LOC100363841	mCG54481-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-04-30	RGD1564357	RGD1564357	RGD1564357_predicted	RGD1564357 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1564357_predicted	RGD1564357 (predicted)	LOC502306	LOC502306	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC502306	LOC502306			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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