Rpl29l4 (ribosomal protein L29 like 4) - Rat Genome Database

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Gene: Rpl29l4 (ribosomal protein L29 like 4) Rattus norvegicus
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Symbol: Rpl29l4
Name: ribosomal protein L29 like 4
RGD ID: 1564138
Description: INTERACTS WITH bisphenol A; paracetamol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L29-like; large ribosomal subunit protein eL29-like; LOC367175; RGD1564138; similar to 60S ribosomal protein L29 (P23)
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88119,794,524 - 119,803,054 (+)NCBIGRCr8GRCr8GRCr8
mRatBN7.28110,916,113 - 110,924,626 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.08119,206,586 - 119,215,096 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08118,554,014 - 118,554,821 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48115,332,681 - 115,341,079 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8110,197,974 - 110,206,475 (+)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
bisphenol A  (EXP)
paracetamol  (EXP)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Rpl29l4
88 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:82
Count of miRNA genes:77
Interacting mature miRNAs:78
Transcripts:ENSRNOT00000050117
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)8105462581132782436Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)882352698127352698Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)861019838121662124Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)880768445125768445Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)880768445125768445Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)870041301121080908Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)868690349119799881Rat
10450865Bw175Body weight QTL 1754.1total fat pad mass (VT:0015008)adipose tissue molecular composition measurement (CMO:0000484)884192326129192326Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)8102413464132782436Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8103375781129871912Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
634332Pia18Pristane induced arthritis QTL 184joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)884192326132782436Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)885348065130348065Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)879394435132782436Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)898145073122898010Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)880768445125768445Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)880768445125768445Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)891340911131690273Rat

Markers in Region
D8Rat11  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr88119,799,743 - 119,799,881 (+)Marker Load Pipeline
mRatBN7.28110,921,334 - 110,921,472 (+)MAPPERmRatBN7.2
Rnor_6.08119,211,805 - 119,211,942NCBIRnor6.0
Rnor_5.08118,551,323 - 118,551,460UniSTSRnor5.0
RGSC_v3.48115,337,809 - 115,338,082RGDRGSC3.4
RGSC_v3.48115,337,900 - 115,338,037UniSTSRGSC3.4
Celera8110,203,184 - 110,203,341UniSTS
RGSC_v3.18115,357,264 - 115,357,537RGD
RH 2.0 Map8913.9RGD
SHRSP x BN Map871.92RGD
Cytogenetic Map8q32UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
3 2 3 5 16 8 1 5 5 31

Sequence


RefSeq Acc Id: XM_039082886   ⟹   XP_038938814
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88119,794,524 - 119,803,054 (+)NCBI
mRatBN7.28110,916,113 - 110,924,626 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038938814 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_038938814   ⟸   XM_039082886


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-29042 BioCyc
NCBI Gene 367175 ENTREZGENE
PhenoGen Rpl29l4 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-10-13 Rpl29l4  ribosomal protein L29 like 4  Rpl29l1  ribosomal protein L29 like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2023-09-19 Rpl29l1  ribosomal protein L29 like 1  RGD1564138  similar to 60S ribosomal protein L29 (P23)  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1564138  similar to 60S ribosomal protein L29 (P23)   RGD1564138_predicted  similar to 60S ribosomal protein L29 (P23) (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1564138_predicted  similar to 60S ribosomal protein L29 (P23) (predicted)  LOC367175  similar to 60S ribosomal protein L29 (P23)  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC367175  similar to 60S ribosomal protein L29 (P23)      Symbol and Name status set to provisional 70820 PROVISIONAL