Vash1 (vasohibin 1) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Vash1 (vasohibin 1) Rattus norvegicus
Analyze
Symbol: Vash1
Name: vasohibin 1
RGD ID: 1564082
Description: Predicted to enable actin binding activity and metallocarboxypeptidase activity. Predicted to be involved in negative regulation of blood vessel endothelial cell migration; proteolysis; and regulation of angiogenesis. Predicted to act upstream of or within several processes, including blood vessel development; negative regulation of endothelial cell proliferation; and negative regulation of lymphangiogenesis. Predicted to be located in apical part of cell; endoplasmic reticulum; and extracellular space. Predicted to be active in cytoplasm. Biomarker of portal hypertension. Human ortholog(s) of this gene implicated in liver cirrhosis and portal hypertension. Orthologous to human VASH1 (vasohibin 1); INTERACTS WITH 1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane; 17beta-estradiol; 17beta-estradiol 3-benzoate.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC503052; RGD1564082; similar to RIKEN cDNA G630009D10 gene; tubulinyl-Tyr carboxypeptidase 1; vasohibin-1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86112,060,086 - 112,076,689 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6112,060,086 - 112,076,689 (+)EnsemblGRCr8
mRatBN7.26106,330,374 - 106,345,740 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6106,329,123 - 106,345,726 (+)EnsemblmRatBN7.2
Rnor_6.06110,624,377 - 110,640,942 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6110,624,856 - 110,637,382 (+)Ensemblrn6Rnor6.0
Rnor_5.06119,921,674 - 119,938,204 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46110,806,294 - 110,818,161 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera6104,151,889 - 104,168,420 (+)NCBICelera
Cytogenetic Map6q31NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane  (EXP)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-methylcholine  (ISO)
3',5'-cyclic AMP  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
Benzo[k]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
Butylbenzyl phthalate  (ISO)
carbon nanotube  (ISO)
chrysene  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
diarsenic trioxide  (ISO)
diazinon  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
ethanol  (ISO)
finasteride  (EXP)
folic acid  (ISO)
fonofos  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
lipopolysaccharide  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
mercury dibromide  (ISO)
methoxychlor  (EXP)
methylphenidate  (ISO)
miconazole  (ISO)
paracetamol  (ISO)
parathion  (ISO)
phenylmercury acetate  (ISO)
progesterone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sulindac  (EXP)
tamoxifen  (ISO)
terbufos  (ISO)
testosterone  (EXP)
tetraphene  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichostatin A  (ISO)
trovafloxacin  (ISO)
valproic acid  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
apical part of cell  (IEA,ISO)
cytoplasm  (IBA,IEA,ISO)
cytosol  (IEA,ISO)
endoplasmic reticulum  (IEA,ISO)
extracellular space  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Disruption of negative feedback loop between vasohibin-1 and vascular endothelial growth factor decreases portal pressure, angiogenesis, and fibrosis in cirrhotic rats. Coch L, etal., Hepatology. 2014 Aug;60(2):633-47. doi: 10.1002/hep.26995. Epub 2014 Jun 18.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15467828   PMID:16707096   PMID:19204325   PMID:20133819   PMID:20659423   PMID:20736312   PMID:23056314   PMID:25184477   PMID:29146868   PMID:29146869   PMID:31171830   PMID:31235911  
PMID:39018366  


Genomics

Comparative Map Data
Vash1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86112,060,086 - 112,076,689 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6112,060,086 - 112,076,689 (+)EnsemblGRCr8
mRatBN7.26106,330,374 - 106,345,740 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6106,329,123 - 106,345,726 (+)EnsemblmRatBN7.2
Rnor_6.06110,624,377 - 110,640,942 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6110,624,856 - 110,637,382 (+)Ensemblrn6Rnor6.0
Rnor_5.06119,921,674 - 119,938,204 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46110,806,294 - 110,818,161 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera6104,151,889 - 104,168,420 (+)NCBICelera
Cytogenetic Map6q31NCBI
VASH1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381476,761,468 - 76,783,015 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1476,761,468 - 76,783,015 (+)Ensemblhg38GRCh38
GRCh371477,227,811 - 77,249,358 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361476,298,285 - 76,319,111 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341476,298,284 - 76,319,109NCBI
Celera1457,266,828 - 57,287,976 (+)NCBICelera
Cytogenetic Map14q24.3NCBI
HuRef1457,396,835 - 57,417,983 (+)NCBIHuRef
CHM1_11477,166,049 - 77,187,187 (+)NCBICHM1_1
T2T-CHM13v2.01470,970,762 - 70,992,327 (+)NCBIT2T-CHM13v2.0
Vash1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391286,725,474 - 86,742,462 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1286,725,474 - 86,738,865 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381286,678,700 - 86,695,688 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1286,678,700 - 86,692,091 (+)Ensemblmm10GRCm38
MGSCv371288,019,650 - 88,036,631 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361287,567,803 - 87,581,194 (+)NCBIMGSCv36mm8
Celera1288,140,378 - 88,157,636 (+)NCBICelera
Cytogenetic Map12D2NCBI
cM Map1240.84NCBI
Vash1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955438752,554 - 772,937 (+)Ensembl
ChiLan1.0NW_004955438753,392 - 772,937 (+)NCBIChiLan1.0ChiLan1.0
VASH1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21577,846,765 - 77,868,086 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11477,063,264 - 77,084,593 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01457,315,866 - 57,337,465 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11476,522,881 - 76,544,254 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1476,522,881 - 76,544,251 (+)EnsemblpanPan2panpan1.1
VASH1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1849,631,029 - 49,651,693 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl849,631,910 - 49,648,168 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha849,314,932 - 49,335,554 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0849,857,895 - 49,878,478 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl849,858,702 - 49,881,810 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1849,528,855 - 49,548,413 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0849,551,007 - 49,571,590 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0849,949,126 - 49,969,713 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Vash1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864026,372,770 - 26,393,180 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364885,675,782 - 5,696,222 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364885,675,788 - 5,696,198 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VASH1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl799,910,497 - 99,929,770 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1799,910,644 - 99,933,633 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27105,958,917 - 105,978,036 (+)NCBISscrofa10.2Sscrofa10.2susScr3
VASH1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12454,025,548 - 54,047,122 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2454,026,617 - 54,047,135 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605342,224,646 - 42,246,437 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vash1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473425,034,266 - 25,053,398 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473425,034,266 - 25,053,409 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Vash1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v17100,767,763 - 100,781,077 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Vash1
147 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:83
Count of miRNA genes:69
Interacting mature miRNAs:76
Transcripts:ENSRNOT00000014017
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)671278722116278722Rat
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)668767270135411972Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)688019181136741135Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)693560258136550638Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)690871046135871046Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)698944780143944780Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6110921244147156653Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)6100704576136029228Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)679198463144254945Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6106095977147156653Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)693778632138778632Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)684490437129490437Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)690871046135871046Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)693560258136550638Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6101593607138161926Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)678204640123204640Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)693560258136550638Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)676937178121937178Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)699437079125323237Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)686494122112380234Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)6101593607146593607Rat
1331722Thshl1Thyroid stimulating hormone level QTL 111.70.0001blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)699708426112483760Rat

Markers in Region
D6Wox22  
Rat AssemblyChrPosition (strand)SourceJBrowse
RGSC_v3.46110,804,020 - 110,804,147UniSTSRGSC3.4
RGSC_v3.46110,804,019 - 110,804,147RGDRGSC3.4
Celera6104,150,854 - 104,150,981UniSTS
RGSC_v3.16110,807,550 - 110,807,678RGD
RH 3.4 Map6742.29RGD
RH 2.0 Map6988.6RGD
D6Wox22  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26106,328,135 - 106,328,263 (+)MAPPERmRatBN7.2
Rnor_6.06110,623,342 - 110,623,469NCBIRnor6.0
Rnor_5.06119,920,604 - 119,920,731UniSTSRnor5.0
RGSC_v3.46110,804,020 - 110,804,147UniSTSRGSC3.4
Celera6104,150,854 - 104,150,981UniSTS
RH 3.4 Map6742.29UniSTS
Cytogenetic Map6q31UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 91 59 6 354 191 11 142 80 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000014017   ⟹   ENSRNOP00000014017
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6112,060,086 - 112,076,689 (+)Ensembl
mRatBN7.2 Ensembl6106,329,123 - 106,345,726 (+)Ensembl
Rnor_6.0 Ensembl6110,624,856 - 110,637,382 (+)Ensembl
RefSeq Acc Id: NM_001427235   ⟹   NP_001414164
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86112,060,086 - 112,076,689 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001414164 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL81606 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000014017
  ENSRNOP00000014017.4
Ensembl Acc Id: ENSRNOP00000014017   ⟸   ENSRNOT00000014017
RefSeq Acc Id: NP_001414164   ⟸   NM_001427235
- UniProtKB: D4AE85 (UniProtKB/TrEMBL),   A6JE62 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4AE85-F1-model_v2 AlphaFold D4AE85 1-380 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564082 AgrOrtholog
BioCyc Gene G2FUF-36755 BioCyc
Ensembl Genes ENSRNOG00000010457 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000014017 ENTREZGENE
  ENSRNOT00000014017.8 UniProtKB/TrEMBL
InterPro Vasohibin UniProtKB/TrEMBL
NCBI Gene 503052 ENTREZGENE
PANTHER PTHR15750 UniProtKB/TrEMBL
  PTHR15750:SF5 UniProtKB/TrEMBL
Pfam Vasohibin UniProtKB/TrEMBL
PhenoGen Vash1 PhenoGen
RatGTEx ENSRNOG00000010457 RatGTEx
UniProt A6JE62 ENTREZGENE, UniProtKB/TrEMBL
  D4AE85 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-06 Vash1  vasohibin 1  RGD1564082_predicted  similar to RIKEN cDNA G630009D10 gene (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1564082_predicted  similar to RIKEN cDNA G630009D10 gene (predicted)  LOC503052  similar to RIKEN cDNA G630009D10 gene  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC503052  similar to RIKEN cDNA G630009D10 gene      Symbol and Name status set to provisional 70820 PROVISIONAL