Vash1 (vasohibin 1) - Rat Genome Database

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Gene: Vash1 (vasohibin 1) Ictidomys tridecemlineatus
Analyze
Symbol: Vash1
Name: vasohibin 1
RGD ID: 12656103
Description: ENCODES a protein that exhibits actin binding (inferred); metallocarboxypeptidase activity (inferred); INVOLVED IN angiogenesis (ortholog); labyrinthine layer blood vessel development (ortholog); negative regulation of angiogenesis (ortholog); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); liver cirrhosis (ortholog); FOUND IN apical part of cell (inferred); cytoplasm (inferred); endoplasmic reticulum (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tubulinyl-Tyr carboxypeptidase 1; vasohibin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864026,372,770 - 26,393,180 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364885,675,782 - 5,696,222 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364885,675,788 - 5,696,198 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Vash1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864026,372,770 - 26,393,180 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364885,675,782 - 5,696,222 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364885,675,788 - 5,696,198 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VASH1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381476,761,468 - 76,783,015 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1476,761,468 - 76,783,015 (+)EnsemblGRCh38hg38GRCh38
GRCh371477,227,811 - 77,249,358 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361476,298,285 - 76,319,111 (+)NCBINCBI36Build 36hg18NCBI36
Build 341476,298,284 - 76,319,109NCBI
Celera1457,266,828 - 57,287,976 (+)NCBICelera
Cytogenetic Map14q24.3NCBI
HuRef1457,396,835 - 57,417,983 (+)NCBIHuRef
CHM1_11477,166,049 - 77,187,187 (+)NCBICHM1_1
T2T-CHM13v2.01470,970,762 - 70,992,327 (+)NCBIT2T-CHM13v2.0
Vash1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391286,725,474 - 86,742,462 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1286,725,474 - 86,738,865 (+)EnsemblGRCm39 Ensembl
GRCm381286,678,700 - 86,695,688 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1286,678,700 - 86,692,091 (+)EnsemblGRCm38mm10GRCm38
MGSCv371288,019,650 - 88,036,631 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361287,567,803 - 87,581,194 (+)NCBIMGSCv36mm8
Celera1288,140,378 - 88,157,636 (+)NCBICelera
Cytogenetic Map12D2NCBI
cM Map1240.84NCBI
Vash1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86112,060,086 - 112,076,689 (+)NCBIGRCr8
mRatBN7.26106,330,374 - 106,345,740 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6106,329,123 - 106,345,726 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.06110,624,377 - 110,640,942 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6110,624,856 - 110,637,382 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06119,921,674 - 119,938,204 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46110,806,294 - 110,818,161 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera6104,151,889 - 104,168,420 (+)NCBICelera
Cytogenetic Map6q31NCBI
Vash1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955438752,554 - 772,937 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955438753,392 - 772,937 (+)NCBIChiLan1.0ChiLan1.0
VASH1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21577,846,765 - 77,868,086 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11477,063,264 - 77,084,593 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01457,315,866 - 57,337,465 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11476,522,881 - 76,544,254 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1476,522,881 - 76,544,251 (+)Ensemblpanpan1.1panPan2
VASH1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1849,631,029 - 49,651,693 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl849,631,910 - 49,648,168 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha849,314,932 - 49,335,554 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0849,857,895 - 49,878,478 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl849,858,702 - 49,881,810 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1849,528,855 - 49,548,413 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0849,551,007 - 49,571,590 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0849,949,126 - 49,969,713 (+)NCBIUU_Cfam_GSD_1.0
VASH1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl799,910,497 - 99,929,770 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1799,910,644 - 99,933,633 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27105,958,917 - 105,978,036 (+)NCBISscrofa10.2Sscrofa10.2susScr3
VASH1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12454,025,548 - 54,047,122 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2454,026,617 - 54,047,135 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605342,224,646 - 42,246,437 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vash1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473425,034,266 - 25,053,398 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473425,034,266 - 25,053,409 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000028785   ⟹   ENSSTOP00000016946
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364885,675,782 - 5,696,222 (+)Ensembl
RefSeq Acc Id: XM_005321265   ⟹   XP_005321322
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864026,372,770 - 26,393,180 (-)NCBI
SpeTri2.0NW_0049364885,675,788 - 5,696,198 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040275486   ⟹   XP_040131420
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864026,372,770 - 26,393,180 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005321322 (Get FASTA)   NCBI Sequence Viewer  
  XP_040131420 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000016946.1
GenBank Protein KAG3260636 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005321322   ⟸   XM_005321265
- Peptide Label: isoform X2
- UniProtKB: I3MXV1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040131420   ⟸   XM_040275486
- Peptide Label: isoform X1
RefSeq Acc Id: ENSSTOP00000016946   ⟸   ENSSTOT00000028785


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000021153 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000028785.2 UniProtKB/TrEMBL
InterPro VASH1 UniProtKB/TrEMBL
NCBI Gene Vash1 ENTREZGENE
PANTHER PTHR15750 UniProtKB/TrEMBL
  PTHR15750:SF5 UniProtKB/TrEMBL
Pfam Vasohibin UniProtKB/TrEMBL
UniProt I3MXV1 ENTREZGENE, UniProtKB/TrEMBL