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Gene: Arhgap42 (Rho GTPase activating protein 42) Rattus norvegicus

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Symbol:

Arhgap42

Name:

Rho GTPase activating protein 42

RGD ID:

1564081

Description:

Predicted to enable GTPase activator activity. Predicted to be involved in signal transduction. Predicted to act upstream of or within negative regulation of Rho protein signal transduction; negative regulation of systemic arterial blood pressure; and negative regulation of vascular associated smooth muscle contraction. Predicted to be located in cytoplasm. Orthologous to human ARHGAP42 (Rho GTPase activating protein 42); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 3,3',5,5'-tetrabromobisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC500943; RGD1564081; rho GTPase-activating protein 42; similar to novel protein similar to human oligophrenin 1 (OPHN1)

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ARHGAP42 (Rho GTPase activating protein 42)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Arhgap42 (Rho GTPase activating protein 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Arhgap42 (Rho GTPase activating protein 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ARHGAP42 (Rho GTPase activating protein 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ARHGAP42 (Rho GTPase activating protein 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Arhgap42 (Rho GTPase activating protein 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ARHGAP42 (Rho GTPase activating protein 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ARHGAP42 (Rho GTPase activating protein 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Arhgap42 (Rho GTPase activating protein 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Arhgap42 (Rho GTPase activating protein 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	TEX36 (testis expressed 36)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Arhgap42 (Rho GTPase activating protein 42)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ARHGAP42 (Rho GTPase activating protein 42)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	arhgap42a (Rho GTPase activating protein 42a)	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	arhgap42a (Rho GTPase activating protein 42a)	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Graf	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	T04C9.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	arhgap42	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	14,436,478 - 14,666,588 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	14,419,256 - 14,666,385 (-)	Ensembl				GRCr8
mRatBN7.2	8	6,154,759 - 6,384,497 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	6,156,865 - 6,384,870 (-)	Ensembl				mRatBN7.2
Rnor_6.0	8	7,210,999 - 7,446,215 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	7,213,822 - 7,426,611 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	7,195,968 - 7,426,711 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	5,871,794 - 6,101,228 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	7,691,250 - 7,919,838 (-)	NCBI		Celera
Cytogenetic Map	8	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(-)-epigallocatechin 3-gallate (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

3,3',5,5'-tetrabromobisphenol A (EXP)

3,4-methylenedioxymethamphetamine (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

alpha-Zearalanol (EXP)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

crocidolite asbestos (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

entinostat (ISO)

ethanol (ISO)

FR900359 (ISO)

fulvestrant (ISO)

gentamycin (EXP)

hydroquinone (ISO)

inulin (ISO)

lead(0) (ISO)

leflunomide (ISO)

melphalan (ISO)

methapyrilene (ISO)

mono(2-ethylhexyl) phthalate (ISO)

nickel sulfate (ISO)

nitrofen (EXP)

ozone (ISO)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (EXP)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

potassium dichromate (ISO)

SB 431542 (ISO)

serpentine asbestos (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

activation of GTPase activity (ISO)

negative regulation of Rho protein signal transduction (ISO)

negative regulation of systemic arterial blood pressure (ISO)

negative regulation of vascular associated smooth muscle contraction (ISO)

signal transduction (IEA)

Cellular Component

cytoplasm (IEA)

Molecular Function

GTPase activator activity (IBA,IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:24335996

Genomics

Comparative Map Data

Arhgap42
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	14,436,478 - 14,666,588 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	14,419,256 - 14,666,385 (-)	Ensembl				GRCr8
mRatBN7.2	8	6,154,759 - 6,384,497 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	6,156,865 - 6,384,870 (-)	Ensembl				mRatBN7.2
Rnor_6.0	8	7,210,999 - 7,446,215 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	7,213,822 - 7,426,611 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	7,195,968 - 7,426,711 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	5,871,794 - 6,101,228 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	7,691,250 - 7,919,838 (-)	NCBI		Celera
Cytogenetic Map	8	q11	NCBI

ARHGAP42
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	100,687,288 - 100,993,941 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	100,687,288 - 100,993,941 (+)	Ensembl			hg38	GRCh38
GRCh37	11	100,558,019 - 100,864,672 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	100,063,620 - 100,354,994 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	11	97,727,721 - 98,030,995 (+)	NCBI		Celera
Cytogenetic Map	11	q22.1	NCBI
HuRef	11	96,494,881 - 96,798,724 (+)	NCBI		HuRef
CHM1_1	11	100,441,819 - 100,744,897 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	100,696,486 - 101,003,484 (+)	NCBI		T2T-CHM13v2.0

Arhgap42
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	8,992,508 - 9,239,032 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	8,994,330 - 9,239,106 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	8,992,507 - 9,239,027 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	8,994,329 - 9,239,101 (-)	Ensembl			mm10	GRCm38
MGSCv37	9	8,994,953 - 9,239,013 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	8,956,170 - 9,200,943 (-)	NCBI		MGSCv36	mm8
Celera	9	6,374,598 - 6,617,500 (-)	NCBI		Celera
Cytogenetic Map	9	A1	NCBI
cM Map	9	2.46	NCBI

Arhgap42
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955412	4,367,369 - 4,594,888 (+)	Ensembl
ChiLan1.0	NW_004955412	4,367,369 - 4,601,653 (+)	NCBI	ChiLan1.0	ChiLan1.0

ARHGAP42
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	101,497,116 - 101,803,545 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	102,585,722 - 102,891,915 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	95,655,874 - 95,962,003 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	99,159,631 - 99,463,457 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	99,159,634 - 99,460,060 (+)	Ensembl			panPan2	panpan1.1

ARHGAP42
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	21	597,306 - 842,086 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	21	602,378 - 884,768 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	21	610,982 - 898,628 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	21	758,866 - 1,046,665 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	21	762,118 - 1,046,722 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	21	542,722 - 830,356 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	21	628,840 - 916,548 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	21	682,442 - 970,297 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Arhgap42
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	84,673,988 - 84,928,802 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936551	6,613,145 - 6,862,024 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936551	6,609,645 - 6,862,514 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ARHGAP42
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	31,720,849 - 31,994,581 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	9	31,720,586 - 31,999,730 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	35,866,775 - 36,008,783 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ARHGAP42
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	92,064,404 - 92,384,103 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	92,065,132 - 92,382,915 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666043	33,479,457 - 33,793,884 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Arhgap42
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624878	1,811,013 - 2,095,733 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624878	1,803,353 - 2,095,767 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Arhgap42
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	8	4,780,434 - 5,005,059 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Arhgap42
1689 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	176
Count of miRNA genes:	136
Interacting mature miRNAs:	143
Transcripts:	ENSRNOT00000009167, ENSRNOT00000031492
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
12880023	Bw184	Body weight QTL 184		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	10382540	55382540	Rat
9590084	Insglur5	Insulin/glucose ratio QTL 5	18.54	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	8	1	32882639	Rat
12880028	Cm103	Cardiac mass QTL 103		0.02	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	10382540	55382540	Rat
12880044	Am9	Aortic mass QTL 9		0.007	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	10382540	55382540	Rat
2317032	Ginf2	Gastrointestinal inflammation QTL 2	3.21	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	8	12964165	57964165	Rat
2317048	Ginf1	Gastrointestinal inflammation QTL 1	3.52	0.005	cecum mucosa thickness (VT:0010234)	enterocolitis severity score (CMO:0002138)	8	12964165	57964165	Rat
12880025	Cm102	Cardiac mass QTL 102		0.044	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	8	10382540	55382540	Rat
2317036	Livw3	Liver weight QTL 3	2.43	0.01	liver mass (VT:0003402)	liver weight to body weight ratio (CMO:0000633)	8	12964165	57964165	Rat

Markers in Region

D8Got343

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	6,334,483 - 6,334,638 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	7,391,839 - 7,391,993	NCBI	Rnor6.0
Rnor_5.0	8	7,376,732 - 7,376,886	UniSTS	Rnor5.0
RGSC_v3.4	8	6,050,490 - 6,050,644	UniSTS	RGSC3.4
Celera	8	7,870,222 - 7,870,376	UniSTS
Cytogenetic Map	8	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	34	59	6	298	134	11	141	81	92	31	16	16

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001430509	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001430510	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_001073215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006226301	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242515	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765909	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008776643	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603562	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603563	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_576354	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000031492 ⟹ ENSRNOP00000037659

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	14,438,494 - 14,659,491 (-)	Ensembl
mRatBN7.2 Ensembl	8	6,156,865 - 6,368,306 (-)	Ensembl
Rnor_6.0 Ensembl	8	7,213,822 - 7,426,611 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000102910 ⟹ ENSRNOP00000095180

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	14,438,494 - 14,666,385 (-)	Ensembl
mRatBN7.2 Ensembl	8	6,156,865 - 6,384,870 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111399 ⟹ ENSRNOP00000083840

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	14,438,494 - 14,666,385 (-)	Ensembl
mRatBN7.2 Ensembl	8	6,156,865 - 6,384,870 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113947 ⟹ ENSRNOP00000089518

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	14,438,494 - 14,666,385 (-)	Ensembl
mRatBN7.2 Ensembl	8	6,156,865 - 6,384,870 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114748 ⟹ ENSRNOP00000078771

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	14,438,495 - 14,592,717 (-)	Ensembl
mRatBN7.2 Ensembl	8	6,156,865 - 6,311,148 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000128008 ⟹ ENSRNOP00000103601

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	14,438,494 - 14,511,205 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000140315 ⟹ ENSRNOP00000099973

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	14,419,256 - 14,666,385 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000149409 ⟹ ENSRNOP00000101347

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	14,438,494 - 14,649,768 (-)	Ensembl

RefSeq Acc Id:

XM_006242515 ⟹ XP_006242577

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	14,436,478 - 14,657,816 (-)	NCBI
mRatBN7.2	8	6,154,759 - 6,369,154 (-)	NCBI
Rnor_6.0	8	7,210,999 - 7,426,563 (-)	NCBI
Rnor_5.0	8	7,195,968 - 7,426,711 (-)	NCBI

Sequence:

show sequence

TTGTCCTTCAGAAAAGACATCAAGACAAATCCTAAAAATAACATATCCAGGTCTGGTTTATTTT
ATTTGGCTGTGGTAATCGTAAAGTTTTTATGGGCCAATTAATTATCCCAGGTGTTCGGTGAAAA
CATAACTAGTGTCCCTAGCTATGGTTCTTCTGAAGTACAGAATCAGGCTTTAGGTATCTTGTGA
ATATTCTTCTGGCAAGGATCCCAGCGCAGAGCCTATAGTGAGTTTAATTTATTTTGCAAGCTTT
CTTTTCGTAAGTGTCTGGAAAGGGTTCCAGTTTCTGTAGAACTCCCTCACAGGAAGACATAACA
TTATTGTCTTGAGGTAACACATGCTGAGGCAGGTGGATCACAGCTAACTAGAGAAAGGGAGAGA
CGCTGGATCAGTAACTGGCTTGTGCTGCCTCCTAAGGTTTGCCTTCTGTTAGTTACTGTTAGTT
GCTTTGGGGGTGGACCTTGACCCGCACCCTGCACTCAGCCTCTGGTGAATTTGTAACTCTGTGA
GGCTGTGTGGTACTTCAGGTTTGGCATTGCTGGCTTTGCTACACAGATTTTAGCAATTAACTCC
AATCATTTATTAACCAGTGTGTCAATCAGCGTTTTATTTTTATTTTAATTCAATTTCATTCTTT
TTTTATCACTAACAAAATATTTCAGAAGATCACCTCAGCAGGGGACAAAGTTCGTGTGAGCTCA
TGTTTCCCAGGTTTCCTTTTGTCTCCTGTGTCACTCAGTTGTTTTAATGTTTTGGGAGCTCAGG
ACAGAGCACCGAGGTGGGGGAAAAAACTGTTCAGAACTTGAGAGCTAGAAAACAGAGAGGAGAA
CCAGAGGCTGGGGTTCCTCTAGTTCCTCAGGGCACCCCACTGTGACTGCATCTCCCAAGGGTCC
GGCCCTTTCCACTTGTGCCGGGATGAAAGATCTGTCCATGGCTGTACAGAAGTTTTCCCAGTCT
CTGCAAGACTTCCAGTTTGAGTGTATCGGAGATGCAGAAACTGATGACGAGATCAGTATTGCTC
AATCACTGAAAGAATTTGCAAGGCTACTCATTGCTGTAGAAGAAGAAAGGCGTAGACTGATTCA
AAATGCTAATGATGTGTTAATCGCACCCCTTGAGAAATTTCGAAAAGAGCAGATCGGTGCAGCT
AAAGATGGAAAGAAGAAGTTTGACAAAGAGAGTGAAAAATACTATTCTATTCTGGATAAACATT
TGAATTTGTCGGCTAAGAAGAAGGAGTCTCATTTGCAAGAGGCTGATTCACAGATTGGCCGAGA
ACATCAGAACTTCTATGAAGCTTCATTAGAATATGTCTTTAAAATCCAAGAGGTTCAAGAGAAA
AAGAAGTTTGAGTTTGTGGAACCGCTTTTGTCCTTCCTTCAGGGTCTGTTTACATTTTACCATG
AGGGATATGAACTTGCCCAGGAATTTGCACCGTACAAGCAACAGCTACAATTCAACTTACAAAA
TACAAGGAACAACTTTGAAAGTACTCGACAAGAGGTGGAGAGATTGATGCAGAGGATGAAGGCT
GCCAACCAGGACTACAGACCACCCAGCCAGTGGACCATGGAGGGCTATCTTTACGTCCAGGAGA
AAAGACCACTGGGTTTCACCTGGACTAAACACTACTGTACTTACGACAAAGGAAGCAAAATGTT
CACAATGAGCGTCTCTGATGTGAAAGCCAGTGGGAAGATGAATGGCCTTGTTACTGGTTCACCC
GAAATGTTTAAGTTAAAGTCATGTATCCGACGGAAGACAGATTCCATTGACAAACGCTTCTGCT
TTGACATAGAAGTGGTCGAAAGACATGGCATCATCACACTACAGGCATTCTCAGAAGCTAACCG
GAAACTCTGGCTGGAGGCCATGGACGGGAAAGAACCGATTTACACGTTGCCCGCCATAATTAGC
AAGAAAGAAGAAATGTACTTAAATGAAGCAGGGTTCAACTTCGTGAGAAAATGTATCCAAGCTG
TGGAAACGAGAGGCATCAACATCTTGGGCCTGTACCGAATAGGAGGAGTGAACTCCAAGGTCCA
GAAACTCATGAACACCACATTTTCTCCGAAGTCCCCTCCTGATATGGACATTGATATTGAGCTG
TGGGACAATAAGACTATAACGAGCGGGCTGAAAAACTACCTCAGGTGCCTTGCAGAACCACTGA
TGACTTACAAACTGCACAAGGATTTCATCATTGCTGTCAAGTCAGACGACCAAAACTACAGGGT
GGAGGCTGTCCATGCACTGGTGCACAAATTGCCGGAGAAAAACAGAGAGATGCTGGACATCTTG
ATTAAACACCTGCTCAAAGTATCTCTACATAGCCAACAAAATCTCATGACTATCTCGAATCTTG
GCGTCATATTTGGTCCAACGCTGATGAGAGCACAGGAGGAAACCGTGGCTGCTATGATGAACAT
CAAGTTTCAGAACATAGTGGTGGAGATCCTGATCGAGCACTATGAGAAGATTTTTCATACTGCC
CCAGACCCAAACATTCCTCTTCCTCAGCCTCAGTCTCGATCTGGATCCCGAAGGACGCGTGCCA
TCTGCCTGTCCACAGGTTCTAGGAAGCCCAGAGGGAGGTACACACCGTGCCTGGCAGAGCCTGA
TAGTGACTCCTATAGCAGCAGCCCAGACAGCACACCCATGGGCAGCATAGAGTCACTCTCCTCC
CACTCCTCTGAACAAAACAGCACCACAAAGTCTACTTCCTGCCAGCCCAGGGAGAAGTCAGGTG
GGATTCCCTGGATCGCAGCCCCATCATCTTCCAATGGACAGAAAAGTCTGGGTCTCTGGACAAC
TAGTCCAGAATCAAGTTCTCGAGAAGATGCAACCAAAACAGACGTGGAGTCAGATTGCCAGAGT
GTGGCCTCGGTCACCAGCCCGGGGGACGTCTCTCCCCCCATAGACCTAGTCAAGAAAGGGCCCT
ATGGGCTCTCAGGACTGAAAAGATCCTCTGCTTCCTCCTCTCTCAGATCCATCTCTGCAGCAGA
AGGAAACAAGAGCTACAGTGGATCCATTCAAAGCTTAACTTCTATAGGCTCCAAAGAGTCACCC
AAAGCCACACCAAACCCAGAGCTGCCTCCAAAAATGTGCCGGAGGTTAAGGCTAGACACCGCCT
CCAGCAATGGCTACCAGCGACCTGGCTCAGTAGTGGCAGCAAAGGCTCAATTATTTGAAAATGC
TGGGTCGCTCAAGCCAGTTTCTTCTGGACGCCAAGCCAAAGCCATGTACTCCTGCAAAGCAGAG
CACAGCCATGAGCTGTCCTTTCCCCAGGGGGCGATCTTTTCCAATGTACATCCATCAGTGGAGC
CGGGGTGGCTAAAGGCGACTTATGAAGGCAGAACAGGACTAGTCCCTGAAAACTACGTTGTCTT
CCTCTAATAGTATTAGTGGATGGCAGTATCTTCATGGTATCCATGGTAACACATAATCAGTGCT
ATAATTTTATCTGACACAGATATGGGGGACCAGCCACTAAAAGAAACATCTATGTGTCTCAAGT
TTTTCACCAGCAGACTATGTAGCTCCTACTTGATGGAAAGAGAAACACACATATTTGCATCATA
GCTATTCTTTTTGCTGTTTTCTTACTTTTAAGATATGCTTCTCTCTCTCCCTGTCTCTCTCTCT
CCCTCTCTCCCACTCTCCCTCTCTCCCTCTCCCTTTCTCAGAGGAAGTGATTTGTGACAGAGTC
TGCTTGCTAGCAGTTGCAGAATCCTAGATACCAAACCCAATCCTGCATACCCCAAATTTGGAAG
TCAGAAATCTGCTCTGCCCATGTTAAAATCTGTTCCTTATTGCCTGATAGTCTCTGGGGAACCT
TGAAATCATTACTTTAAAATTGTAATTTAAATTGTTCATTTATTATTTTTGTTTTTTTAATATA
CTGTTTTTATATGTGATTGTTTTGCTGGTCCTAAACATTTCAAGAAAATCAGTCCTTATTTTAT
CATAACTATATTTTATTTGTTTTCTAAGATGATAGTATTTGAAAGCAATAATGTATATGAAGTC
TGTAAAGTAAGCCGAGTGTAAGTCAAACACTGATTCCACCATAAGCAGTCCATCCAGAACAGTA
GATGGTTTCTCTGATTCCAAGCGCAAGTCGGAGAAACACGTCTGTAAAGCCTGTAAGGGTATAT
TTTTGTCGCAGGCTAGATGTGACTTATGAAGCCCAGATGAACCATCCTTCCTTTAGACGTCATG
TAAACTGATCTTGGGACTTTTATAAAATTTTCCATTAAAACACACGTGTTAATAAATCACATGT
GCACATCTTTTGCTTCCTGTCAGTATGGTGACATTGTAATGGCCATTGTGGGCCAATGTAAAGG
TGTGGTGTACCATGCAGCCAGCCCACTGGAACTGCTACGGCCTCTGGTTTTAATGATGGGGAAG
TTTTGGACTCAGATGCTGTTGTACAAATGATAAAGACATTGTTTGAACTCTTAATTGAGAAACT
GTGCCTTCTAAACCTTTTTTTACTGGAAACAGGAAATGAACACCTACTCGATTCTTAGACCACA
AAGTGTGCTTTCTTAAAAAAAGATTTATTTATTTATATGAATGTTTTGTCCACATGTGTGTATG
TGTACTACATGTATGCCTTTTACCCATGAAGGTCAGAAAAGAGAGGCTAATAGCCTTGAACTAG
AATTACCGAGGGAACTGAGTTACTAATGGTCGTAACTCCAGCCCCCGACCACAGAGTTTGAGAG
CAAGCCATCATTGTTAACAGGAGTGGAATTTACAAGGTTTTCTAGGATGGCATTCAGCCATAGC
CTTTCCTATGAATTCCACTGAATTATAGACCTCATACAGCAGAGAGGTATTTACTCTTCCTTAT
GAGGTTGCAAACTAAGGGTTGTATATCAGCCACTCCTTCTATCATAACCTATTTCAATAATTCC
AATGAATATATACAATGACAAAAAGCACTTCTTCTCCACAGTCTGAAAGGTTGTCTGCCCAGAG
CATGTGCCCATGTGGCCTTGCTATCTAACTGACTTCTTCAACCTTTTCTCTACTTCATAGACAC
GCAGGTGTCTAAAGAGCTACGAAGCTATTGTTGTGTGGTATAGGCTATAGTCTTGGTTTATTCT
GCATTACATCAGCACTTCTAGAGAAAATAAGCAGAGTATTCACACAGCGCTATGCCTCAGTGCA
TTTATGCTTTTAAATAAGTTAAGATATGGATTAGAATTAACGAGTAGAGAGTAACACTTGACAA
ACAGATGTATCCAAAAATAACACCAGTGAACTGAAGGCCATGAGTGCAAAGCATCTCACAAAGA
TTTGACCTGAGAGGAAATCGATGAAATCTTGGCTCTTTCTCTTTCTTTCCTCTGGATTCTAGTC
TCTGTACACTGCAGTGAGGTATTGTTAAACCCTTTGGTCAAGGTGGGTATCTGGTGGTTTTTAG
TATACAAATGGCATTGCTGCCTCTGGTCACCGTTTTCTGGGACTGAAAGTAGCCTTTGTAATGC
ACCAGTTGCCTCTCTGCAGGGCTTTCTGTTGAAGCCCTTTGTCATCAACCCCTTGCAACCTGTT
AGATCAGCACCCCTGCAGGGAAGCTGGTTTGCTCTCCAAGACCAACTTGGCAGTAAGTATCCAA
TATCTTTCTCCACTGCTGCTGCACAGAGAAATCCCAACTTTTCATTTTATTTTAATGTAGACCC
TAACATTCCTGCCTCCCAATTGTGAGCTAAACCCATGGATGCTCACTTAGAGCTTTGTAGGACT
AGGTTATGAAACACAGCTTTCCTTTCTGCTGGTGAGATCTACTCTGTCAGTATGTGTTTGAGGC
TCCTTCCCTGAAACAAGACACAAACATGCTGGTTCATGTTGCACTTGCGCTTTAAGAGTTCTTT
CTTTGTGTTGATTGCATATGTGAGGAAACCATGAGGATATATGGGAGAAAGGTTAAGGGCGCTT
TCCCCTGAAGTAAGTATCCTGCAGATGAGGCATGCAAGAGCACTGCAGAGATGAAGATGTGTGC
TCTGGAGTGCCCGGAAGGAAGCTGTGCAGGGCAGGAGAGCATCGCTGGTGATGGAAAGAGTCCC
GCTCCAAACTGTGATGCTATCAACTTCATGAAGAACCTGACCTGCTCAGGGACAGTGAGATGTG
TTAGAACTGTCATACCCACACTCTGAATGCTACAGTATGCACCCAAATAAAGGCCTATAGTTTG
ATGGATGTGAGGAAAGCATTGGGGACTGATGTAATTCTCTTGGGTGTTCTGTATGAGTATCCTT
GGGTTTGAAACACTGGTATATTCGACTCTTGGCCTGTGCTGCCATTCTACTCCATTTGGTTCAT
ACAAGTTAGTCATTCAACTGAACGATTTTCCTAATGTATTGTTTGCCAGTTTCTGAAAAGTAAA
AGAATCTTTCAATCTCTTCA

hide sequence

RefSeq Acc Id:

XM_576354 ⟹ XP_576354

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	14,436,478 - 14,666,588 (-)	NCBI
mRatBN7.2	8	6,154,759 - 6,384,497 (-)	NCBI
Rnor_6.0	8	7,210,999 - 7,446,215 (-)	NCBI
Rnor_5.0	8	7,195,968 - 7,426,711 (-)	NCBI
RGSC_v3.4	8	5,871,794 - 6,101,228 (-)	RGD

Sequence:

show sequence

CGGGCCCGAGTCGCCGCGGGGCGCCGCCGGCTAAGTGCGCGCCACTGTCCCCACGGCCAGCGAG
TGGCGCTGCCAGGAAGCTGTACTCTGCGGTGCAACCCGCAGTCTCGCCACCCCAACGGTGCGAG
CGAGCGACGATGTGCCCCGGTGACAGCGCCCGGAGCCTCCGCCCGGCCGCCGGGCAGCTGCACT
GAGCCAGGCGCGCGGGGCTCGGTCCTCCGCGCTCCCCAGCGCTCCCGGGTGCTCCCCGTTGCTC
CCCGGCGTTCTCAGTGTCCCCCCGCATCCGCCGCAGCTAGCGGCCGCCGCGCCTGGGCCATGGG
GCTGCCCACTCTGGAGTTCAGCGATTCTTATTTGGACAGTCCGGATTTCAGGGAGCGATTGCAG
TGTCACGAGATCGAGCTGGAGAGAACCAACAAGTTCATCAAAGAGCTGCTGAAGGATGGCTCTC
TGCTCATCGGGGCGCTGAGAAATCTGTCCATGGCTGTACAGAAGTTTTCCCAGTCTCTGCAAGA
CTTCCAGTTTGAGTGTATCGGAGATGCAGAAACTGATGACGAGATCAGTATTGCTCAATCACTG
AAAGAATTTGCAAGGCTACTCATTGCTGTAGAAGAAGAAAGGCGTAGACTGATTCAAAATGCTA
ATGATGTGTTAATCGCACCCCTTGAGAAATTTCGAAAAGAGCAGATCGGTGCAGCTAAAGATGG
AAAGAAGAAGTTTGACAAAGAGAGTGAAAAATACTATTCTATTCTGGATAAACATTTGAATTTG
TCGGCTAAGAAGAAGGAGTCTCATTTGCAAGAGGCTGATTCACAGATTGGCCGAGAACATCAGA
ACTTCTATGAAGCTTCATTAGAATATGTCTTTAAAATCCAAGAGGTTCAAGAGAAAAAGAAGTT
TGAGTTTGTGGAACCGCTTTTGTCCTTCCTTCAGGGTCTGTTTACATTTTACCATGAGGGATAT
GAACTTGCCCAGGAATTTGCACCGTACAAGCAACAGCTACAATTCAACTTACAAAATACAAGGA
ACAACTTTGAAAGTACTCGACAAGAGGTGGAGAGATTGATGCAGAGGATGAAGGCTGCCAACCA
GGACTACAGACCACCCAGCCAGTGGACCATGGAGGGCTATCTTTACGTCCAGGAGAAAAGACCA
CTGGGTTTCACCTGGACTAAACACTACTGTACTTACGACAAAGGAAGCAAAATGTTCACAATGA
GCGTCTCTGATGTGAAAGCCAGTGGGAAGATGAATGGCCTTGTTACTGGTTCACCCGAAATGTT
TAAGTTAAAGTCATGTATCCGACGGAAGACAGATTCCATTGACAAACGCTTCTGCTTTGACATA
GAAGTGGTCGAAAGACATGGCATCATCACACTACAGGCATTCTCAGAAGCTAACCGGAAACTCT
GGCTGGAGGCCATGGACGGGAAAGAACCGATTTACACGTTGCCCGCCATAATTAGCAAGAAAGA
AGAAATGTACTTAAATGAAGCAGGGTTCAACTTCGTGAGAAAATGTATCCAAGCTGTGGAAACG
AGAGGCATCAACATCTTGGGCCTGTACCGAATAGGAGGAGTGAACTCCAAGGTCCAGAAACTCA
TGAACACCACATTTTCTCCGAAGTCCCCTCCTGATATGGACATTGATATTGAGCTGTGGGACAA
TAAGACTATAACGAGCGGGCTGAAAAACTACCTCAGGTGCCTTGCAGAACCACTGATGACTTAC
AAACTGCACAAGGATTTCATCATTGCTGTCAAGTCAGACGACCAAAACTACAGGGTGGAGGCTG
TCCATGCACTGGTGCACAAATTGCCGGAGAAAAACAGAGAGATGCTGGACATCTTGATTAAACA
CCTGCTCAAAGTATCTCTACATAGCCAACAAAATCTCATGACTATCTCGAATCTTGGCGTCATA
TTTGGTCCAACGCTGATGAGAGCACAGGAGGAAACCGTGGCTGCTATGATGAACATCAAGTTTC
AGAACATAGTGGTGGAGATCCTGATCGAGCACTATGAGAAGATTTTTCATACTGCCCCAGACCC
AAACATTCCTCTTCCTCAGCCTCAGTCTCGATCTGGATCCCGAAGGACGCGTGCCATCTGCCTG
TCCACAGGTTCTAGGAAGCCCAGAGGGAGGTACACACCGTGCCTGGCAGAGCCTGATAGTGACT
CCTATAGCAGCAGCCCAGACAGCACACCCATGGGCAGCATAGAGTCACTCTCCTCCCACTCCTC
TGAACAAAACAGCACCACAAAGTCTACTTCCTGCCAGCCCAGGGAGAAGTCAGGTGGGATTCCC
TGGATCGCAGCCCCATCATCTTCCAATGGACAGAAAAGTCTGGGTCTCTGGACAACTAGTCCAG
AATCAAGTTCTCGAGAAGATGCAACCAAAACAGACGTGGAGTCAGATTGCCAGAGTGTGGCCTC
GGTCACCAGCCCGGGGGACGTCTCTCCCCCCATAGACCTAGTCAAGAAAGGGCCCTATGGGCTC
TCAGGACTGAAAAGATCCTCTGCTTCCTCCTCTCTCAGATCCATCTCTGCAGCAGAAGGAAACA
AGAGCTACAGTGGATCCATTCAAAGCTTAACTTCTATAGGCTCCAAAGAGTCACCCAAAGCCAC
ACCAAACCCAGAGCTGCCTCCAAAAATGTGCCGGAGGTTAAGGCTAGACACCGCCTCCAGCAAT
GGCTACCAGCGACCTGGCTCAGTAGTGGCAGCAAAGGCTCAATTATTTGAAAATGCTGGGTCGC
TCAAGCCAGTTTCTTCTGGACGCCAAGCCAAAGCCATGTACTCCTGCAAAGCAGAGCACAGCCA
TGAGCTGTCCTTTCCCCAGGGGGCGATCTTTTCCAATGTACATCCATCAGTGGAGCCGGGGTGG
CTAAAGGCGACTTATGAAGGCAGAACAGGACTAGTCCCTGAAAACTACGTTGTCTTCCTCTAAT
AGTATTAGTGGATGGCAGTATCTTCATGGTATCCATGGTAACACATAATCAGTGCTATAATTTT
ATCTGACACAGATATGGGGGACCAGCCACTAAAAGAAACATCTATGTGTCTCAAGTTTTTCACC
AGCAGACTATGTAGCTCCTACTTGATGGAAAGAGAAACACACATATTTGCATCATAGCTATTCT
TTTTGCTGTTTTCTTACTTTTAAGATATGCTTCTCTCTCTCCCTGTCTCTCTCTCTCCCTCTCT
CCCACTCTCCCTCTCTCCCTCTCCCTTTCTCAGAGGAAGTGATTTGTGACAGAGTCTGCTTGCT
AGCAGTTGCAGAATCCTAGATACCAAACCCAATCCTGCATACCCCAAATTTGGAAGTCAGAAAT
CTGCTCTGCCCATGTTAAAATCTGTTCCTTATTGCCTGATAGTCTCTGGGGAACCTTGAAATCA
TTACTTTAAAATTGTAATTTAAATTGTTCATTTATTATTTTTGTTTTTTTAATATACTGTTTTT
ATATGTGATTGTTTTGCTGGTCCTAAACATTTCAAGAAAATCAGTCCTTATTTTATCATAACTA
TATTTTATTTGTTTTCTAAGATGATAGTATTTGAAAGCAATAATGTATATGAAGTCTGTAAAGT
AAGCCGAGTGTAAGTCAAACACTGATTCCACCATAAGCAGTCCATCCAGAACAGTAGATGGTTT
CTCTGATTCCAAGCGCAAGTCGGAGAAACACGTCTGTAAAGCCTGTAAGGGTATATTTTTGTCG
CAGGCTAGATGTGACTTATGAAGCCCAGATGAACCATCCTTCCTTTAGACGTCATGTAAACTGA
TCTTGGGACTTTTATAAAATTTTCCATTAAAACACACGTGTTAATAAATCACATGTGCACATCT
TTTGCTTCCTGTCAGTATGGTGACATTGTAATGGCCATTGTGGGCCAATGTAAAGGTGTGGTGT
ACCATGCAGCCAGCCCACTGGAACTGCTACGGCCTCTGGTTTTAATGATGGGGAAGTTTTGGAC
TCAGATGCTGTTGTACAAATGATAAAGACATTGTTTGAACTCTTAATTGAGAAACTGTGCCTTC
TAAACCTTTTTTTACTGGAAACAGGAAATGAACACCTACTCGATTCTTAGACCACAAAGTGTGC
TTTCTTAAAAAAAGATTTATTTATTTATATGAATGTTTTGTCCACATGTGTGTATGTGTACTAC
ATGTATGCCTTTTACCCATGAAGGTCAGAAAAGAGAGGCTAATAGCCTTGAACTAGAATTACCG
AGGGAACTGAGTTACTAATGGTCGTAACTCCAGCCCCCGACCACAGAGTTTGAGAGCAAGCCAT
CATTGTTAACAGGAGTGGAATTTACAAGGTTTTCTAGGATGGCATTCAGCCATAGCCTTTCCTA
TGAATTCCACTGAATTATAGACCTCATACAGCAGAGAGGTATTTACTCTTCCTTATGAGGTTGC
AAACTAAGGGTTGTATATCAGCCACTCCTTCTATCATAACCTATTTCAATAATTCCAATGAATA
TATACAATGACAAAAAGCACTTCTTCTCCACAGTCTGAAAGGTTGTCTGCCCAGAGCATGTGCC
CATGTGGCCTTGCTATCTAACTGACTTCTTCAACCTTTTCTCTACTTCATAGACACGCAGGTGT
CTAAAGAGCTACGAAGCTATTGTTGTGTGGTATAGGCTATAGTCTTGGTTTATTCTGCATTACA
TCAGCACTTCTAGAGAAAATAAGCAGAGTATTCACACAGCGCTATGCCTCAGTGCATTTATGCT
TTTAAATAAGTTAAGATATGGATTAGAATTAACGAGTAGAGAGTAACACTTGACAAACAGATGT
ATCCAAAAATAACACCAGTGAACTGAAGGCCATGAGTGCAAAGCATCTCACAAAGATTTGACCT
GAGAGGAAATCGATGAAATCTTGGCTCTTTCTCTTTCTTTCCTCTGGATTCTAGTCTCTGTACA
CTGCAGTGAGGTATTGTTAAACCCTTTGGTCAAGGTGGGTATCTGGTGGTTTTTAGTATACAAA
TGGCATTGCTGCCTCTGGTCACCGTTTTCTGGGACTGAAAGTAGCCTTTGTAATGCACCAGTTG
CCTCTCTGCAGGGCTTTCTGTTGAAGCCCTTTGTCATCAACCCCTTGCAACCTGTTAGATCAGC
ACCCCTGCAGGGAAGCTGGTTTGCTCTCCAAGACCAACTTGGCAGTAAGTATCCAATATCTTTC
TCCACTGCTGCTGCACAGAGAAATCCCAACTTTTCATTTTATTTTAATGTAGACCCTAACATTC
CTGCCTCCCAATTGTGAGCTAAACCCATGGATGCTCACTTAGAGCTTTGTAGGACTAGGTTATG
AAACACAGCTTTCCTTTCTGCTGGTGAGATCTACTCTGTCAGTATGTGTTTGAGGCTCCTTCCC
TGAAACAAGACACAAACATGCTGGTTCATGTTGCACTTGCGCTTTAAGAGTTCTTTCTTTGTGT
TGATTGCATATGTGAGGAAACCATGAGGATATATGGGAGAAAGGTTAAGGGCGCTTTCCCCTGA
AGTAAGTATCCTGCAGATGAGGCATGCAAGAGCACTGCAGAGATGAAGATGTGTGCTCTGGAGT
GCCCGGAAGGAAGCTGTGCAGGGCAGGAGAGCATCGCTGGTGATGGAAAGAGTCCCGCTCCAAA
CTGTGATGCTATCAACTTCATGAAGAACCTGACCTGCTCAGGGACAGTGAGATGTGTTAGAACT
GTCATACCCACACTCTGAATGCTACAGTATGCACCCAAATAAAGGCCTATAGTTTGATGGATGT
GAGGAAAGCATTGGGGACTGATGTAATTCTCTTGGGTGTTCTGTATGAGTATCCTTGGGTTTGA
AACACTGGTATATTCGACTCTTGGCCTGTGCTGCCATTCTACTCCATTTGGTTCATACAAGTTA
GTCATTCAACTGAACGATTTTCCTAATGTATTGTTTGCCAGTTTCTGAAAAGTAAAAGAATCTT
TCAATCTCTTCA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001417438	(Get FASTA)	NCBI Sequence Viewer
	NP_001417439	(Get FASTA)	NCBI Sequence Viewer
	XP_006242577	(Get FASTA)	NCBI Sequence Viewer
	XP_576354	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000037659.7
	ENSRNOP00000078771.1
	ENSRNOP00000083840.1
	ENSRNOP00000089518.1
	ENSRNOP00000095180
	ENSRNOP00000095180.2
	ENSRNOP00000099973.1
	ENSRNOP00000101347
	ENSRNOP00000101347.1
	ENSRNOP00000103601.1

RefSeq Acc Id:

XP_576354 ⟸ XM_576354

- Peptide Label:

isoform X1

- Sequence:

show sequence

MGLPTLEFSDSYLDSPDFRERLQCHEIELERTNKFIKELLKDGSLLIGALRNLSMAVQKFSQSL
QDFQFECIGDAETDDEISIAQSLKEFARLLIAVEEERRRLIQNANDVLIAPLEKFRKEQIGAAK
DGKKKFDKESEKYYSILDKHLNLSAKKKESHLQEADSQIGREHQNFYEASLEYVFKIQEVQEKK
KFEFVEPLLSFLQGLFTFYHEGYELAQEFAPYKQQLQFNLQNTRNNFESTRQEVERLMQRMKAA
NQDYRPPSQWTMEGYLYVQEKRPLGFTWTKHYCTYDKGSKMFTMSVSDVKASGKMNGLVTGSPE
MFKLKSCIRRKTDSIDKRFCFDIEVVERHGIITLQAFSEANRKLWLEAMDGKEPIYTLPAIISK
KEEMYLNEAGFNFVRKCIQAVETRGINILGLYRIGGVNSKVQKLMNTTFSPKSPPDMDIDIELW
DNKTITSGLKNYLRCLAEPLMTYKLHKDFIIAVKSDDQNYRVEAVHALVHKLPEKNREMLDILI
KHLLKVSLHSQQNLMTISNLGVIFGPTLMRAQEETVAAMMNIKFQNIVVEILIEHYEKIFHTAP
DPNIPLPQPQSRSGSRRTRAICLSTGSRKPRGRYTPCLAEPDSDSYSSSPDSTPMGSIESLSSH
SSEQNSTTKSTSCQPREKSGGIPWIAAPSSSNGQKSLGLWTTSPESSSREDATKTDVESDCQSV
ASVTSPGDVSPPIDLVKKGPYGLSGLKRSSASSSLRSISAAEGNKSYSGSIQSLTSIGSKESPK
ATPNPELPPKMCRRLRLDTASSNGYQRPGSVVAAKAQLFENAGSLKPVSSGRQAKAMYSCKAEH
SHELSFPQGAIFSNVHPSVEPGWLKATYEGRTGLVPENYVVFL

hide sequence

RefSeq Acc Id:

XP_006242577 ⟸ XM_006242515

- Peptide Label:

isoform X2

- Sequence:

show sequence

MKDLSMAVQKFSQSLQDFQFECIGDAETDDEISIAQSLKEFARLLIAVEEERRRLIQNANDVLI
APLEKFRKEQIGAAKDGKKKFDKESEKYYSILDKHLNLSAKKKESHLQEADSQIGREHQNFYEA
SLEYVFKIQEVQEKKKFEFVEPLLSFLQGLFTFYHEGYELAQEFAPYKQQLQFNLQNTRNNFES
TRQEVERLMQRMKAANQDYRPPSQWTMEGYLYVQEKRPLGFTWTKHYCTYDKGSKMFTMSVSDV
KASGKMNGLVTGSPEMFKLKSCIRRKTDSIDKRFCFDIEVVERHGIITLQAFSEANRKLWLEAM
DGKEPIYTLPAIISKKEEMYLNEAGFNFVRKCIQAVETRGINILGLYRIGGVNSKVQKLMNTTF
SPKSPPDMDIDIELWDNKTITSGLKNYLRCLAEPLMTYKLHKDFIIAVKSDDQNYRVEAVHALV
HKLPEKNREMLDILIKHLLKVSLHSQQNLMTISNLGVIFGPTLMRAQEETVAAMMNIKFQNIVV
EILIEHYEKIFHTAPDPNIPLPQPQSRSGSRRTRAICLSTGSRKPRGRYTPCLAEPDSDSYSSS
PDSTPMGSIESLSSHSSEQNSTTKSTSCQPREKSGGIPWIAAPSSSNGQKSLGLWTTSPESSSR
EDATKTDVESDCQSVASVTSPGDVSPPIDLVKKGPYGLSGLKRSSASSSLRSISAAEGNKSYSG
SIQSLTSIGSKESPKATPNPELPPKMCRRLRLDTASSNGYQRPGSVVAAKAQLFENAGSLKPVS
SGRQAKAMYSCKAEHSHELSFPQGAIFSNVHPSVEPGWLKATYEGRTGLVPENYVVFL

hide sequence

Ensembl Acc Id:

ENSRNOP00000037659 ⟸ ENSRNOT00000031492

Ensembl Acc Id:

ENSRNOP00000089518 ⟸ ENSRNOT00000113947

Ensembl Acc Id:

ENSRNOP00000083840 ⟸ ENSRNOT00000111399

Ensembl Acc Id:

ENSRNOP00000078771 ⟸ ENSRNOT00000114748

Ensembl Acc Id:

ENSRNOP00000095180 ⟸ ENSRNOT00000102910

Ensembl Acc Id:

ENSRNOP00000099973 ⟸ ENSRNOT00000140315

Ensembl Acc Id:

ENSRNOP00000101347 ⟸ ENSRNOT00000149409

Ensembl Acc Id:

ENSRNOP00000103601 ⟸ ENSRNOT00000128008

Protein Domains

PH Rho-GAP SH3

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1M2Q1-F1-model_v2	AlphaFold	F1M2Q1	1-826	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1564081	AgrOrtholog
BioCyc Gene	G2FUF-31748	BioCyc
Ensembl Genes	ENSRNOG00000026821	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000031492.9	UniProtKB/TrEMBL
	ENSRNOT00000102910	ENTREZGENE
	ENSRNOT00000102910.2	UniProtKB/TrEMBL
	ENSRNOT00000111399.2	UniProtKB/TrEMBL
	ENSRNOT00000113947.2	UniProtKB/TrEMBL
	ENSRNOT00000114748.2	UniProtKB/TrEMBL
	ENSRNOT00000128008.1	UniProtKB/TrEMBL
	ENSRNOT00000140315.1	UniProtKB/TrEMBL
	ENSRNOT00000149409	ENTREZGENE
	ENSRNOT00000149409.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.555.10	UniProtKB/TrEMBL
	1.20.1270.60	UniProtKB/TrEMBL
	2.30.29.30	UniProtKB/TrEMBL
	SH3 Domains	UniProtKB/TrEMBL
InterPro	AH/BAR-dom	UniProtKB/TrEMBL
	BAR_dom	UniProtKB/TrEMBL
	GRAF_fam	UniProtKB/TrEMBL
	PH_GRAF	UniProtKB/TrEMBL
	PH_like_dom	UniProtKB/TrEMBL
	Pleckstrin_homology	UniProtKB/TrEMBL
	Rho_GTPase_activation_prot	UniProtKB/TrEMBL
	RhoGAP_dom	UniProtKB/TrEMBL
	SH3-like_dom	UniProtKB/TrEMBL
	SH3_domain	UniProtKB/TrEMBL
KEGG Report	rno:500943	UniProtKB/TrEMBL
NCBI Gene	500943	ENTREZGENE
PANTHER	OLIGOPHRENIN 1	UniProtKB/TrEMBL
	RHO GTPASE-ACTIVATING PROTEIN 42	UniProtKB/TrEMBL
Pfam	BAR_3	UniProtKB/TrEMBL
	PF00169	UniProtKB/TrEMBL
	RhoGAP	UniProtKB/TrEMBL
	SH3_9	UniProtKB/TrEMBL
PhenoGen	Arhgap42	PhenoGen
PROSITE	PH_DOMAIN	UniProtKB/TrEMBL
	RHOGAP	UniProtKB/TrEMBL
	SH3	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000026821	RatGTEx
SMART	RhoGAP	UniProtKB/TrEMBL
	SH3	UniProtKB/TrEMBL
	SM00233	UniProtKB/TrEMBL
Superfamily-SCOP	PH domain-like	UniProtKB/TrEMBL
	Rho_GAP	UniProtKB/TrEMBL
	SH3	UniProtKB/TrEMBL
	SSF103657	UniProtKB/TrEMBL
UniProt	A0A8I5ZLH0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZY47	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6ACT5_RAT	UniProtKB/TrEMBL
	A0A8I6APV4	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0L649_RAT	UniProtKB/TrEMBL
	A0ABK0L8M9_RAT	UniProtKB/TrEMBL
	A0ABK0LPX4_RAT	UniProtKB/TrEMBL
	F1M2Q1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2010-09-15	Arhgap42	Rho GTPase activating protein 42	RGD1564081	similar to novel protein similar to human oligophrenin 1 (OPHN1)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1564081	similar to novel protein similar to human oligophrenin 1 (OPHN1)	RGD1564081_predicted	similar to novel protein similar to human oligophrenin 1 (OPHN1) (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1564081_predicted	similar to novel protein similar to human oligophrenin 1 (OPHN1) (predicted)	LOC500943	similar to novel protein similar to human oligophrenin 1 (OPHN1)	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC500943	similar to novel protein similar to human oligophrenin 1 (OPHN1)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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