Rpl5l1 (ribosomal protein L5-like 1) - Rat Genome Database

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Gene: Rpl5l1 (ribosomal protein L5-like 1) Rattus norvegicus
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Symbol: Rpl5l1
Name: ribosomal protein L5-like 1
RGD ID: 1564051
Description: ENCODES a protein that exhibits 5S rRNA binding (inferred); rRNA binding (inferred); structural constituent of ribosome (inferred); INVOLVED IN translation (inferred); PARTICIPATES IN p53 signaling pathway; FOUND IN cytoplasm (inferred); cytosolic ribosome (inferred); ribonucleoprotein complex (inferred); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L5-like; large ribosomal subunit protein uL18-like; LOC501206; RGD1564051; similar to 60S ribosomal protein L5
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89121,529,607 - 121,530,584 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.29113,949,013 - 113,949,987 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.010112,564,193 - 112,565,170 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.010112,140,916 - 112,141,877 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.49113,233,164 - 113,234,057 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera10106,027,721 - 106,028,702 (-)NCBICelera
Cytogenetic Map9q38NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:25931508  


Genomics


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)944458256121768150Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)968875497121768150Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)986720043121768150Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
13 1 24 82 34 30 18 72 18 6 195 118 11 69 46 50 12 16 16

Sequence


RefSeq Acc Id: XM_039084950   ⟹   XP_038940878
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89121,529,607 - 121,530,584 (-)NCBI
mRatBN7.29113,949,013 - 113,949,987 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038940878 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000100983
  ENSRNOP00000100983.1
RefSeq Acc Id: XP_038940878   ⟸   XM_039084950
- UniProtKB: A0A8I6A0J9 (UniProtKB/TrEMBL)

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-26285 BioCyc
Ensembl Genes ENSRNOG00000073774 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000163406 ENTREZGENE
  ENSRNOT00000163406.1 UniProtKB/TrEMBL
NCBI Gene 501206 ENTREZGENE
PharmGKB RPL5 RGD
PhenoGen Rpl5l1 PhenoGen
RatGTEx ENSRNOG00000073774 RatGTEx
UniProt A0A8I6A0J9 ENTREZGENE
  A0ABK0L9G9_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-10-12 Rpl5l1  ribosomal protein L5-like 1  RGD1564051  similar to 60S ribosomal protein L5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1564051  similar to 60S ribosomal protein L5   RGD1564051_predicted  similar to 60S ribosomal protein L5 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1564051_predicted  similar to 60S ribosomal protein L5 (predicted)  LOC501206  similar to 60S ribosomal protein L5  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC501206  similar to 60S ribosomal protein L5      Symbol and Name status set to provisional 70820 PROVISIONAL