Garnl3 (GTPase activating Rap/RanGAP domain-like 3) - Rat Genome Database

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Gene: Garnl3 (GTPase activating Rap/RanGAP domain-like 3) Rattus norvegicus
Analyze
Symbol: Garnl3
Name: GTPase activating Rap/RanGAP domain-like 3
RGD ID: 1564019
Description: Predicted to enable GTPase activator activity. Predicted to be involved in regulation of small GTPase mediated signal transduction. Orthologous to human GARNL3 (GTPase activating Rap/RanGAP domain like 3); INTERACTS WITH 3-chloropropane-1,2-diol; 4,4'-sulfonyldiphenol; amphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: GTPase-activating Rap/Ran-GAP domain-like protein 3; LOC499783; RGD1564019; similar to GTPase activating RANGAP domain-like 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8336,686,388 - 36,830,011 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl336,686,389 - 36,830,020 (-)EnsemblGRCr8
mRatBN7.2316,288,718 - 16,432,308 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl316,288,719 - 16,430,837 (-)EnsemblmRatBN7.2
Rnor_6.0312,034,131 - 12,176,591 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl312,034,413 - 12,155,098 (-)Ensemblrn6Rnor6.0
Rnor_5.0317,370,764 - 17,464,230 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4311,976,369 - 12,076,318 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera311,027,567 - 11,168,914 (-)NCBICelera
Cytogenetic Map3p11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Garnl3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8336,686,388 - 36,830,011 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl336,686,389 - 36,830,020 (-)EnsemblGRCr8
mRatBN7.2316,288,718 - 16,432,308 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl316,288,719 - 16,430,837 (-)EnsemblmRatBN7.2
Rnor_6.0312,034,131 - 12,176,591 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl312,034,413 - 12,155,098 (-)Ensemblrn6Rnor6.0
Rnor_5.0317,370,764 - 17,464,230 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4311,976,369 - 12,076,318 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera311,027,567 - 11,168,914 (-)NCBICelera
Cytogenetic Map3p11NCBI
GARNL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389127,224,613 - 127,393,660 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9127,224,265 - 127,393,660 (+)Ensemblhg38GRCh38
GRCh379130,026,178 - 130,155,939 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369129,066,967 - 129,195,649 (+)NCBIBuild 36Build 36hg18NCBI36
Build 349127,106,699 - 127,235,380NCBI
Celera9100,681,389 - 100,810,468 (+)NCBICelera
Cytogenetic Map9q33.3NCBI
HuRef999,642,408 - 99,771,209 (+)NCBIHuRef
CHM1_19130,177,442 - 130,306,494 (+)NCBICHM1_1
T2T-CHM13v2.09139,431,005 - 139,600,139 (+)NCBIT2T-CHM13v2.0
Garnl3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39232,876,237 - 33,021,871 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl232,876,236 - 33,021,666 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38232,986,225 - 33,131,859 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl232,986,224 - 33,131,654 (-)Ensemblmm10GRCm38
MGSCv37232,841,886 - 32,942,724 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36232,808,375 - 32,909,213 (-)NCBIMGSCv36mm8
Celera232,693,353 - 32,794,303 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map222.09NCBI
Garnl3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554191,190,344 - 1,332,553 (-)Ensembl
ChiLan1.0NW_0049554191,190,059 - 1,332,553 (-)NCBIChiLan1.0ChiLan1.0
GARNL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21111,960,249 - 12,130,724 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1911,962,596 - 12,133,074 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0998,343,954 - 98,514,381 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19126,998,418 - 127,168,056 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9127,038,457 - 127,168,056 (+)EnsemblpanPan2panpan1.1
GARNL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1955,931,995 - 56,078,521 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl955,932,016 - 56,078,391 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha955,135,764 - 55,282,398 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0956,853,507 - 57,000,577 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl956,853,514 - 57,000,891 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1955,613,247 - 55,760,021 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0955,928,572 - 56,075,173 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0956,019,498 - 56,166,262 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Garnl3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947195,237,098 - 195,384,304 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648715,005,575 - 15,152,953 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648715,017,587 - 15,151,647 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GARNL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1267,772,347 - 267,923,390 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11267,772,408 - 267,922,731 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21301,693,696 - 301,833,904 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GARNL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11210,734,969 - 10,911,786 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1210,734,798 - 10,911,816 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660795,305,259 - 5,480,301 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Garnl3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247608,069,606 - 8,235,443 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247608,069,321 - 8,235,409 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Garnl3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v152,504,456 - 2,645,145 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Garnl3
1383 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:82
Count of miRNA genes:37
Interacting mature miRNAs:42
Transcripts:ENSRNOT00000032078, ENSRNOT00000032897
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32905627547904329Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
10450811Scl73Serum cholesterol level QTL 734.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat
10450808Scl72Serum cholesterol level QTL 724.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
10450806Scl71Serum cholesterol level QTL 715.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)32862533967641995Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)33540319997383526Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)3612543751125437Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)336721849110333156Rat
8693641Alc30Alcohol consumption QTL 3020.739drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)33083238444921701Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3136721849Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3655634751556347Rat
1558657Cm43Cardiac mass QTL 436.63e-08heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)33610140381101403Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31527234860272348Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)32905627547904329Rat
1300169Bp177Blood pressure QTL 1772.96arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)33642511681425116Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat

Markers in Region
BF390955  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2316,317,516 - 16,317,735 (+)MAPPERmRatBN7.2
Rnor_6.0312,062,854 - 12,063,072NCBIRnor6.0
Rnor_5.0317,398,729 - 17,398,947UniSTSRnor5.0
RGSC_v3.4312,006,108 - 12,006,326UniSTSRGSC3.4
Celera311,056,377 - 11,056,595UniSTS
RH 3.4 Map373.1UniSTS
Cytogenetic Map3p11UniSTS
RH128973  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2316,288,806 - 16,288,992 (+)MAPPERmRatBN7.2
Rnor_6.0312,034,220 - 12,034,405NCBIRnor6.0
Rnor_5.0317,370,853 - 17,371,038UniSTSRnor5.0
RGSC_v3.4311,976,458 - 11,976,643UniSTSRGSC3.4
Celera311,027,656 - 11,027,841UniSTS
RH 3.4 Map374.6UniSTS
Cytogenetic Map3p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 91 59 6 355 191 11 141 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001430652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010064757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010064758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010064759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide FQ211851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000082696   ⟹   ENSRNOP00000070180
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl336,686,389 - 36,807,241 (-)Ensembl
mRatBN7.2 Ensembl316,288,719 - 16,409,520 (-)Ensembl
Rnor_6.0 Ensembl312,034,413 - 12,155,098 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099420   ⟹   ENSRNOP00000082025
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl336,686,389 - 36,828,837 (-)Ensembl
mRatBN7.2 Ensembl316,288,719 - 16,430,713 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000101955   ⟹   ENSRNOP00000094574
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl336,686,389 - 36,825,084 (-)Ensembl
mRatBN7.2 Ensembl316,288,719 - 16,430,837 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000114726   ⟹   ENSRNOP00000086495
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl336,686,389 - 36,830,020 (-)Ensembl
mRatBN7.2 Ensembl316,288,719 - 16,392,528 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000130540   ⟹   ENSRNOP00000107399
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl336,690,840 - 36,828,866 (-)Ensembl
RefSeq Acc Id: XM_039106187   ⟹   XP_038962115
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,686,388 - 36,828,679 (-)NCBI
mRatBN7.2316,288,718 - 16,431,004 (-)NCBI
RefSeq Acc Id: XM_039106188   ⟹   XP_038962116
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,686,388 - 36,830,011 (-)NCBI
mRatBN7.2316,288,718 - 16,432,308 (-)NCBI
RefSeq Acc Id: XM_039106195   ⟹   XP_038962123
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,686,388 - 36,792,421 (-)NCBI
mRatBN7.2316,288,718 - 16,395,390 (-)NCBI
RefSeq Acc Id: XM_039106197   ⟹   XP_038962125
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,686,388 - 36,807,203 (-)NCBI
mRatBN7.2316,288,718 - 16,432,180 (-)NCBI
RefSeq Acc Id: XM_039106198   ⟹   XP_038962126
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,686,388 - 36,789,362 (-)NCBI
mRatBN7.2316,288,718 - 16,391,963 (-)NCBI
RefSeq Acc Id: XM_039106200   ⟹   XP_038962128
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,686,388 - 36,807,121 (-)NCBI
mRatBN7.2316,288,718 - 16,430,739 (-)NCBI
RefSeq Acc Id: XM_039106201   ⟹   XP_038962129
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,686,388 - 36,807,207 (-)NCBI
mRatBN7.2316,288,718 - 16,409,508 (-)NCBI
RefSeq Acc Id: XM_039106202   ⟹   XP_038962130
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,686,388 - 36,789,720 (-)NCBI
mRatBN7.2316,288,718 - 16,391,743 (-)NCBI
RefSeq Acc Id: XM_063284843   ⟹   XP_063140913
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,686,388 - 36,829,901 (-)NCBI
RefSeq Acc Id: XM_063284844   ⟹   XP_063140914
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,687,793 - 36,828,681 (-)NCBI
RefSeq Acc Id: XM_063284845   ⟹   XP_063140915
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,686,388 - 36,828,681 (-)NCBI
RefSeq Acc Id: XM_063284846   ⟹   XP_063140916
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,687,793 - 36,828,683 (-)NCBI
RefSeq Acc Id: XM_063284847   ⟹   XP_063140917
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,687,793 - 36,792,572 (-)NCBI
RefSeq Acc Id: XM_063284848   ⟹   XP_063140918
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,686,388 - 36,828,681 (-)NCBI
RefSeq Acc Id: XM_063284849   ⟹   XP_063140919
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,686,388 - 36,828,325 (-)NCBI
RefSeq Acc Id: XM_063284850   ⟹   XP_063140920
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,686,388 - 36,790,085 (-)NCBI
RefSeq Acc Id: XR_010064757
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,710,534 - 36,828,687 (-)NCBI
RefSeq Acc Id: XR_010064758
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,711,000 - 36,828,687 (-)NCBI
RefSeq Acc Id: XR_010064759
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8336,710,534 - 36,828,687 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001417581 (Get FASTA)   NCBI Sequence Viewer  
  NP_001417582 (Get FASTA)   NCBI Sequence Viewer  
  NP_001417583 (Get FASTA)   NCBI Sequence Viewer  
  NP_001417584 (Get FASTA)   NCBI Sequence Viewer  
  NP_001417585 (Get FASTA)   NCBI Sequence Viewer  
  NP_001417586 (Get FASTA)   NCBI Sequence Viewer  
  NP_001417587 (Get FASTA)   NCBI Sequence Viewer  
  NP_001417588 (Get FASTA)   NCBI Sequence Viewer  
  NP_001417589 (Get FASTA)   NCBI Sequence Viewer  
  NP_001417590 (Get FASTA)   NCBI Sequence Viewer  
  NP_001417591 (Get FASTA)   NCBI Sequence Viewer  
  NP_001417592 (Get FASTA)   NCBI Sequence Viewer  
  NP_001417593 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962115 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962116 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962123 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962125 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962126 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962128 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962129 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962130 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140913 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140914 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140915 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140916 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140917 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140918 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140919 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140920 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000070180
  ENSRNOP00000070180.3
  ENSRNOP00000082025
  ENSRNOP00000082025.2
  ENSRNOP00000086495
  ENSRNOP00000086495.2
  ENSRNOP00000094574
  ENSRNOP00000094574.2
  ENSRNOP00000107399
  ENSRNOP00000107399.1
Ensembl Acc Id: ENSRNOP00000070180   ⟸   ENSRNOT00000082696
RefSeq Acc Id: XP_038962116   ⟸   XM_039106188
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038962125   ⟸   XM_039106197
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038962115   ⟸   XM_039106187
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038962128   ⟸   XM_039106200
- Peptide Label: isoform X9
- UniProtKB: A0A0G2JX90 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962129   ⟸   XM_039106201
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038962123   ⟸   XM_039106195
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038962126   ⟸   XM_039106198
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038962130   ⟸   XM_039106202
- Peptide Label: isoform X9
Ensembl Acc Id: ENSRNOP00000086495   ⟸   ENSRNOT00000114726
Ensembl Acc Id: ENSRNOP00000082025   ⟸   ENSRNOT00000099420
Ensembl Acc Id: ENSRNOP00000094574   ⟸   ENSRNOT00000101955
RefSeq Acc Id: XP_063140913   ⟸   XM_063284843
- Peptide Label: isoform X3
- UniProtKB: A0A8I6ALW8 (UniProtKB/TrEMBL),   A0A0G2JX90 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140918   ⟸   XM_063284848
- Peptide Label: isoform X3
- UniProtKB: A0A8I6ALW8 (UniProtKB/TrEMBL),   A0A0G2JX90 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140915   ⟸   XM_063284845
- Peptide Label: isoform X5
- UniProtKB: A0A0G2JX90 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140919   ⟸   XM_063284849
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063140920   ⟸   XM_063284850
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063140916   ⟸   XM_063284846
- Peptide Label: isoform X7
- UniProtKB: A0A0G2JX90 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140914   ⟸   XM_063284844
- Peptide Label: isoform X4
- UniProtKB: A0A0G2JX90 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140917   ⟸   XM_063284847
- Peptide Label: isoform X8
Ensembl Acc Id: ENSRNOP00000107399   ⟸   ENSRNOT00000130540

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JX90-F1-model_v2 AlphaFold A0A0G2JX90 1-1035 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564019 AgrOrtholog
BioCyc Gene G2FUF-50111 BioCyc
Ensembl Genes ENSRNOG00000057044 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000082696 ENTREZGENE
  ENSRNOT00000082696.3 UniProtKB/TrEMBL
  ENSRNOT00000099420 ENTREZGENE
  ENSRNOT00000099420.2 UniProtKB/TrEMBL
  ENSRNOT00000101955 ENTREZGENE
  ENSRNOT00000101955.2 UniProtKB/TrEMBL
  ENSRNOT00000114726 ENTREZGENE
  ENSRNOT00000114726.2 UniProtKB/TrEMBL
  ENSRNOT00000130540 ENTREZGENE
  ENSRNOT00000130540.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.11210 UniProtKB/TrEMBL
InterPro Citron UniProtKB/TrEMBL
  Rap/Ran-GAP_sf UniProtKB/TrEMBL
  Rap1_Ran_GAP UniProtKB/TrEMBL
  Rap_GAP_dom UniProtKB/TrEMBL
NCBI Gene 499783 ENTREZGENE
PANTHER GTPASE-ACTIVATING RAP/RAN-GAP DOMAIN-LIKE PROTEIN 3 UniProtKB/TrEMBL
  RAP GTPASE-ACTIVATING PROTEIN UniProtKB/TrEMBL
Pfam CNH UniProtKB/TrEMBL
  Rap_GAP UniProtKB/TrEMBL
PhenoGen Garnl3 PhenoGen
PROSITE CNH UniProtKB/TrEMBL
  RAPGAP UniProtKB/TrEMBL
RatGTEx ENSRNOG00000057044 RatGTEx
Superfamily-SCOP SSF111347 UniProtKB/TrEMBL
UniProt A0A0G2JX90 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZUD1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A905 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ALW8 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LA55_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-10-12 Garnl3  GTPase activating Rap/RanGAP domain-like 3  RGD1564019  similar to GTPase activating RANGAP domain-like 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1564019  similar to GTPase activating RANGAP domain-like 3   RGD1564019_predicted  similar to GTPase activating RANGAP domain-like 3 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1564019_predicted  similar to GTPase activating RANGAP domain-like 3 (predicted)  LOC499783  similar to GTPase activating RANGAP domain-like 3  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC499783  similar to GTPase activating RANGAP domain-like 3      Symbol and Name status set to provisional 70820 PROVISIONAL