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Gene: Ankrd13b (ankyrin repeat domain 13B) Rattus norvegicus

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Symbol:

Ankrd13b

Name:

ankyrin repeat domain 13B

RGD ID:

1564005

Description:

Predicted to enable ubiquitin-modified protein reader activity. Predicted to be involved in negative regulation of receptor internalization. Predicted to be located in endosome; perinuclear region of cytoplasm; and plasma membrane. Predicted to be active in cytoplasm. Orthologous to human ANKRD13B (ankyrin repeat domain 13B); INTERACTS WITH (+)-schisandrin B; furan; tetrachloromethane.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

ankyrin repeat domain-containing protein 13B; LOC360575; RGD1564005; similar to novel protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ANKRD13B (ankyrin repeat domain 13B)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Ankrd13b (ankyrin repeat domain 13b)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ankrd13b (ankyrin repeat domain 13B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ANKRD13B (ankyrin repeat domain 13B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ANKRD13B (ankyrin repeat domain 13B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ankrd13b (ankyrin repeat domain 13B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ANKRD13B (ankyrin repeat domain 13B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ANKRD13B (ankyrin repeat domain 13B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ankrd13b (ankyrin repeat domain 13B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ANKRD13B (ankyrin repeat domain 13B)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ankrd13b (ankyrin repeat domain 13b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ankrd13b (ankyrin repeat domain 13B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	C18F10.7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG15118	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ankrd13b	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	62,817,791 - 62,836,456 (-)	NCBI		GRCr8
mRatBN7.2	10	62,319,660 - 62,338,342 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	62,319,647 - 62,340,253 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	10	62,674,416 - 62,691,949 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	62,674,561 - 62,690,845 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	62,371,873 - 62,389,402 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	66,628,069 - 66,646,674 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	61,323,116 - 61,341,905 (-)	NCBI		Celera
Cytogenetic Map	10	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ankrd13b	Rat	neurofibromatosis 1		ISO	ANKRD13B (Homo sapiens)	8554872	ClinVar Annotator: match by term: Neurofibromatosis and type 1	ClinVar	PMID:10712197 more ...

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ankrd13b	Rat	(+)-schisandrin B	multiple interactions	EXP		6480464	schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of ANKRD13B mRNA]	CTD	PMID:31150632
Ankrd13b	Rat	1,2-dichloroethane	decreases expression	ISO	Ankrd13b (Mus musculus)	6480464	ethylene dichloride results in decreased expression of ANKRD13B mRNA	CTD	PMID:28960355
Ankrd13b	Rat	1,2-dimethylhydrazine	increases expression	ISO	Ankrd13b (Mus musculus)	6480464	1 and 2-Dimethylhydrazine results in increased expression of ANKRD13B mRNA	CTD	PMID:22206623
Ankrd13b	Rat	1,2-dimethylhydrazine	multiple interactions	ISO	Ankrd13b (Mus musculus)	6480464	Folic Acid inhibits the reaction [1 and 2-Dimethylhydrazine results in increased expression of ANKRD13B mRNA]	CTD	PMID:22206623
Ankrd13b	Rat	17beta-estradiol	increases expression	ISO	Ankrd13b (Mus musculus)	6480464	Estradiol results in increased expression of ANKRD13B mRNA	CTD	PMID:39298647
Ankrd13b	Rat	17beta-estradiol	increases expression	ISO	ANKRD13B (Homo sapiens)	6480464	Estradiol results in increased expression of ANKRD13B mRNA	CTD	PMID:31614463
Ankrd13b	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	Ankrd13b (Mus musculus)	6480464	Tetrachlorodibenzodioxin affects the expression of ANKRD13B mRNA	CTD	PMID:21570461
Ankrd13b	Rat	3,4-methylenedioxymethamphetamine	increases expression	ISO	Ankrd13b (Mus musculus)	6480464	N-Methyl-3 and 4-methylenedioxyamphetamine results in increased expression of ANKRD13B mRNA	CTD	PMID:20188158
Ankrd13b	Rat	3-isobutyl-1-methyl-7H-xanthine	multiple interactions	ISO	ANKRD13B (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in increased expression of ANKRD13B mRNA	CTD	PMID:28628672
Ankrd13b	Rat	4,4'-sulfonyldiphenol	multiple interactions	ISO	ANKRD13B (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in increased expression of ANKRD13B mRNA	CTD	PMID:28628672
Ankrd13b	Rat	4,4'-sulfonyldiphenol	increases methylation	ISO	Ankrd13b (Mus musculus)	6480464	bisphenol S results in increased methylation of ANKRD13B promoter	CTD	PMID:33297965
Ankrd13b	Rat	acrylamide	decreases expression	ISO	ANKRD13B (Homo sapiens)	6480464	Acrylamide results in decreased expression of ANKRD13B mRNA	CTD	PMID:32763439
Ankrd13b	Rat	aflatoxin B1	increases expression	ISO	ANKRD13B (Homo sapiens)	6480464	Aflatoxin B1 results in increased expression of ANKRD13B mRNA	CTD	PMID:22100608
Ankrd13b	Rat	all-trans-retinoic acid	decreases expression	ISO	ANKRD13B (Homo sapiens)	6480464	Tretinoin results in decreased expression of ANKRD13B mRNA	CTD	PMID:33167477
Ankrd13b	Rat	aristolochic acid A	increases expression	ISO	ANKRD13B (Homo sapiens)	6480464	aristolochic acid I results in increased expression of ANKRD13B mRNA	CTD	PMID:33212167
Ankrd13b	Rat	arsane	multiple interactions	ISO	ANKRD13B (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of ANKRD13B mRNA and [sodium arsenite results in increased abundance of Arsenic] which results in decreased expression of ANKRD13B mRNA	CTD	PMID:39836092
Ankrd13b	Rat	arsenic atom	multiple interactions	ISO	ANKRD13B (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of ANKRD13B mRNA and [sodium arsenite results in increased abundance of Arsenic] which results in decreased expression of ANKRD13B mRNA	CTD	PMID:39836092
Ankrd13b	Rat	atrazine	increases expression	ISO	ANKRD13B (Homo sapiens)	6480464	Atrazine results in increased expression of ANKRD13B mRNA	CTD	PMID:22378314
Ankrd13b	Rat	benzo[a]pyrene	increases mutagenesis	ISO	ANKRD13B (Homo sapiens)	6480464	Benzo(a)pyrene results in increased mutagenesis of ANKRD13B gene	CTD	PMID:25435355
Ankrd13b	Rat	benzo[a]pyrene	increases expression	ISO	ANKRD13B (Homo sapiens)	6480464	Benzo(a)pyrene results in increased expression of ANKRD13B mRNA	CTD	PMID:32234424
Ankrd13b	Rat	benzo[a]pyrene	affects methylation	ISO	ANKRD13B (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of ANKRD13B 3' UTR and Benzo(a)pyrene affects the methylation of ANKRD13B intron	CTD	PMID:27901495 and PMID:30157460
Ankrd13b	Rat	bisphenol A	multiple interactions	ISO	ANKRD13B (Homo sapiens)	6480464	[bisphenol A co-treated with Fulvestrant] results in decreased methylation of ANKRD13B gene	CTD	PMID:31601247
Ankrd13b	Rat	bisphenol A	decreases methylation	ISO	ANKRD13B (Homo sapiens)	6480464	bisphenol A results in decreased methylation of ANKRD13B gene	CTD	PMID:31601247
Ankrd13b	Rat	bisphenol F	decreases expression	ISO	Ankrd13b (Mus musculus)	6480464	bisphenol F results in decreased expression of ANKRD13B mRNA	CTD	PMID:38685157
Ankrd13b	Rat	CGP 52608	multiple interactions	ISO	ANKRD13B (Homo sapiens)	6480464	CGP 52608 promotes the reaction [RORA protein binds to ANKRD13B gene]	CTD	PMID:28238834
Ankrd13b	Rat	chlorpyrifos	increases expression	ISO	Ankrd13b (Mus musculus)	6480464	Chlorpyrifos results in increased expression of ANKRD13B mRNA	CTD	PMID:37019170
Ankrd13b	Rat	choline	multiple interactions	ISO	Ankrd13b (Mus musculus)	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased expression of ANKRD13B mRNA	CTD	PMID:20938992
Ankrd13b	Rat	cisplatin	decreases expression	ISO	ANKRD13B (Homo sapiens)	6480464	Cisplatin results in decreased expression of ANKRD13B mRNA	CTD	PMID:27594783
Ankrd13b	Rat	cisplatin	increases expression	ISO	ANKRD13B (Homo sapiens)	6480464	Cisplatin results in increased expression of ANKRD13B mRNA	CTD	PMID:27392435
Ankrd13b	Rat	cisplatin	multiple interactions	ISO	ANKRD13B (Homo sapiens)	6480464	[Cisplatin co-treated with jinfukang] results in increased expression of ANKRD13B mRNA	CTD	PMID:27392435
Ankrd13b	Rat	dexamethasone	multiple interactions	ISO	ANKRD13B (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in increased expression of ANKRD13B mRNA	CTD	PMID:28628672
Ankrd13b	Rat	dicrotophos	increases expression	ISO	ANKRD13B (Homo sapiens)	6480464	dicrotophos results in increased expression of ANKRD13B mRNA	CTD	PMID:28302478
Ankrd13b	Rat	doxorubicin	decreases expression	ISO	ANKRD13B (Homo sapiens)	6480464	Doxorubicin results in decreased expression of ANKRD13B mRNA	CTD	PMID:29803840
Ankrd13b	Rat	folic acid	multiple interactions	ISO	Ankrd13b (Mus musculus)	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased expression of ANKRD13B mRNA more ...	CTD	PMID:20938992 and PMID:22206623
Ankrd13b	Rat	fulvestrant	multiple interactions	ISO	ANKRD13B (Homo sapiens)	6480464	[bisphenol A co-treated with Fulvestrant] results in decreased methylation of ANKRD13B gene	CTD	PMID:31601247
Ankrd13b	Rat	furan	increases expression	EXP		6480464	furan results in increased expression of ANKRD13B mRNA	CTD	PMID:25539665
Ankrd13b	Rat	indometacin	multiple interactions	ISO	ANKRD13B (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in increased expression of ANKRD13B mRNA	CTD	PMID:28628672
Ankrd13b	Rat	L-methionine	multiple interactions	ISO	Ankrd13b (Mus musculus)	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased expression of ANKRD13B mRNA	CTD	PMID:20938992
Ankrd13b	Rat	manganese atom	multiple interactions	ISO	ANKRD13B (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of ANKRD13B mRNA	CTD	PMID:39836092
Ankrd13b	Rat	manganese(0)	multiple interactions	ISO	ANKRD13B (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of ANKRD13B mRNA	CTD	PMID:39836092
Ankrd13b	Rat	manganese(II) chloride	multiple interactions	ISO	ANKRD13B (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of ANKRD13B mRNA	CTD	PMID:39836092
Ankrd13b	Rat	paracetamol	affects expression	ISO	Ankrd13b (Mus musculus)	6480464	Acetaminophen affects the expression of ANKRD13B mRNA	CTD	PMID:17562736
Ankrd13b	Rat	pirinixic acid	increases expression	ISO	Ankrd13b (Mus musculus)	6480464	pirinixic acid results in increased expression of ANKRD13B mRNA	CTD	PMID:23811191
Ankrd13b	Rat	sodium arsenite	decreases expression	ISO	ANKRD13B (Homo sapiens)	6480464	sodium arsenite results in decreased expression of ANKRD13B mRNA	CTD	PMID:38568856
Ankrd13b	Rat	sodium arsenite	decreases expression	ISO	Ankrd13b (Mus musculus)	6480464	sodium arsenite results in decreased expression of ANKRD13B mRNA	CTD	PMID:37682722
Ankrd13b	Rat	sodium arsenite	multiple interactions	ISO	ANKRD13B (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of ANKRD13B mRNA and [sodium arsenite results in increased abundance of Arsenic] which results in decreased expression of ANKRD13B mRNA	CTD	PMID:39836092
Ankrd13b	Rat	sunitinib	increases expression	ISO	ANKRD13B (Homo sapiens)	6480464	Sunitinib results in increased expression of ANKRD13B mRNA	CTD	PMID:31533062
Ankrd13b	Rat	tetrachloromethane	increases expression	ISO	Ankrd13b (Mus musculus)	6480464	Carbon Tetrachloride results in increased expression of ANKRD13B mRNA	CTD	PMID:17484886
Ankrd13b	Rat	tetrachloromethane	increases expression	EXP		6480464	Carbon Tetrachloride results in increased expression of ANKRD13B mRNA	CTD	PMID:31150632
Ankrd13b	Rat	tetrachloromethane	multiple interactions	EXP		6480464	schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of ANKRD13B mRNA]	CTD	PMID:31150632
Ankrd13b	Rat	thioacetamide	increases expression	EXP		6480464	Thioacetamide results in increased expression of ANKRD13B mRNA	CTD	PMID:23411599 and PMID:34492290
Ankrd13b	Rat	titanium dioxide	decreases methylation	ISO	Ankrd13b (Mus musculus)	6480464	titanium dioxide results in decreased methylation of ANKRD13B gene	CTD	PMID:35295148
Ankrd13b	Rat	triclosan	increases expression	ISO	ANKRD13B (Homo sapiens)	6480464	Triclosan results in increased expression of ANKRD13B mRNA	CTD	PMID:30510588
Ankrd13b	Rat	triptonide	decreases expression	ISO	Ankrd13b (Mus musculus)	6480464	triptonide results in decreased expression of ANKRD13B mRNA	CTD	PMID:33045310
Ankrd13b	Rat	valproic acid	decreases expression	ISO	ANKRD13B (Homo sapiens)	6480464	Valproic Acid results in decreased expression of ANKRD13B mRNA	CTD	PMID:23527032
Ankrd13b	Rat	valproic acid	affects expression	ISO	ANKRD13B (Homo sapiens)	6480464	Valproic Acid affects the expression of ANKRD13B mRNA	CTD	PMID:25979313
Ankrd13b	Rat	valproic acid	increases methylation	ISO	ANKRD13B (Homo sapiens)	6480464	Valproic Acid results in increased methylation of ANKRD13B gene	CTD	PMID:29154799

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ankrd13b	Rat	negative regulation of receptor internalization	involved_in	ISO	ANKRD13B (Homo sapiens)	1624291	PMID:22298428	RGD	PMID:22298428
Ankrd13b	Rat	negative regulation of receptor internalization	involved_in	IEA	UniProtKB:Q86YJ7 and ensembl:ENSP00000378328	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ankrd13b	Rat	cytoplasm	located_in	ISO	ANKRD13B (Homo sapiens)	1624291	PMID:22298428	RGD	PMID:22298428
Ankrd13b	Rat	cytoplasm	located_in	IEA	UniProtKB:Q86YJ7 and ensembl:ENSP00000378328	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Ankrd13b	Rat	cytoplasm	is_active_in	IBA	PANTHER:PTN000278400 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Ankrd13b	Rat	early endosome	located_in	ISO	ANKRD13B (Homo sapiens)	1624291	PMID:22298428	RGD	PMID:22298428
Ankrd13b	Rat	early endosome	located_in	IEA	UniProtKB:Q86YJ7 and ensembl:ENSP00000378328	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Ankrd13b	Rat	intracellular membrane-bounded organelle	located_in	ISO	ANKRD13B (Homo sapiens) and UniProtKB:Q86YJ7-1	1624291		RGD	GO_REF:0000052
Ankrd13b	Rat	intracellular membrane-bounded organelle	located_in	IEA	UniProtKB:Q86YJ7 and ensembl:ENSP00000378328	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Ankrd13b	Rat	late endosome	located_in	ISO	ANKRD13B (Homo sapiens)	1624291	PMID:22298428	RGD	PMID:22298428
Ankrd13b	Rat	late endosome	located_in	IEA	UniProtKB:Q86YJ7 and ensembl:ENSP00000378328	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Ankrd13b	Rat	late endosome	located_in	IEA	UniProtKB-SubCell:SL-0152	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Ankrd13b	Rat	membrane	located_in	IEA	UniProtKB-KW:KW-0472	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Ankrd13b	Rat	perinuclear region of cytoplasm	located_in	ISO	ANKRD13B (Homo sapiens)	1624291	PMID:22298428	RGD	PMID:22298428
Ankrd13b	Rat	perinuclear region of cytoplasm	located_in	IEA	UniProtKB:Q86YJ7 and ensembl:ENSP00000378328	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Ankrd13b	Rat	plasma membrane	located_in	ISO	ANKRD13B (Homo sapiens)	1624291	PMID:22298428	RGD	PMID:22298428
Ankrd13b	Rat	plasma membrane	located_in	IEA	UniProtKB:Q86YJ7 and ensembl:ENSP00000378328	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Ankrd13b	Rat	plasma membrane	located_in	IEA	UniProtKB-SubCell:SL-0039	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Ankrd13b	Rat	plasma membrane	located_in	ISO	ANKRD13B (Homo sapiens) and UniProtKB:Q86YJ7-1	1624291		RGD	GO_REF:0000052

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ankrd13b	Rat	ubiquitin-modified protein reader activity	enables	ISO	ANKRD13B (Homo sapiens)	1624291	UniProtKB:P00533 and PMID:22298428	RGD	PMID:22298428
Ankrd13b	Rat	ubiquitin-modified protein reader activity	enables	IEA	UniProtKB:Q86YJ7 and ensembl:ENSP00000378328	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:22298428

Ankrd13b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	62,817,791 - 62,836,456 (-)	NCBI		GRCr8
mRatBN7.2	10	62,319,660 - 62,338,342 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	62,319,647 - 62,340,253 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	10	62,674,416 - 62,691,949 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	62,674,561 - 62,690,845 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	62,371,873 - 62,389,402 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	66,628,069 - 66,646,674 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	61,323,116 - 61,341,905 (-)	NCBI		Celera
Cytogenetic Map	10	q24	NCBI

ANKRD13B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	29,593,132 - 29,614,761 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	29,589,769 - 29,614,761 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	27,920,150 - 27,941,779 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	24,944,653 - 24,965,905 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	17	24,781,393 - 24,802,648 (+)	NCBI		Celera
Cytogenetic Map	17	q11.2	NCBI
HuRef	17	24,129,928 - 24,151,179 (+)	NCBI		HuRef
CHM1_1	17	27,983,046 - 28,004,250 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	30,536,010 - 30,557,662 (+)	NCBI		T2T-CHM13v2.0

Ankrd13b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	77,361,311 - 77,380,868 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	77,361,311 - 77,380,504 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	77,470,485 - 77,490,042 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	77,470,485 - 77,489,678 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	77,283,989 - 77,303,180 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	77,286,441 - 77,289,267 (-)	NCBI		MGSCv36	mm8
Celera	11	84,969,048 - 84,988,239 (-)	NCBI		Celera
Cytogenetic Map	11	B5	NCBI
cM Map	11	46.59	NCBI

Ankrd13b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955481	3,644,332 - 3,661,895 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955481	3,644,332 - 3,662,375 (-)	NCBI	ChiLan1.0	ChiLan1.0

ANKRD13B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	34,841,569 - 34,866,687 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	36,723,685 - 36,748,848 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	27,159,796 - 27,181,528 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	27,676,809 - 27,684,179 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	27,676,809 - 27,684,253 (-)	Ensembl	panpan1.1		panPan2

ANKRD13B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	43,696,334 - 43,713,888 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	43,696,398 - 43,714,912 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	42,849,401 - 42,867,986 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	44,512,483 - 44,530,865 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	44,512,507 - 44,530,855 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	43,296,847 - 43,315,433 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	43,587,526 - 43,604,739 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	43,667,644 - 43,686,231 (+)	NCBI		UU_Cfam_GSD_1.0

Ankrd13b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	42,827,079 - 42,846,390 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936538	5,705,026 - 5,724,335 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936538	5,700,063 - 5,724,335 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ANKRD13B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	45,787,684 - 45,805,999 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	45,787,661 - 45,806,003 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	47,926,026 - 47,946,281 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ANKRD13B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	23,329,783 - 23,354,522 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	23,333,688 - 23,353,340 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666075	6,717,954 - 6,740,674 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ankrd13b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624786	2,090,946 - 2,108,717 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624786	2,091,030 - 2,108,736 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Ankrd13b
71 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	142
Count of miRNA genes:	69
Interacting mature miRNAs:	72
Transcripts:	ENSRNOT00000019946, ENSRNOT00000056110
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61441	Btemp1	Thermal response to stress QTL 1	4		body temperature trait (VT:0005535)	core body temperature (CMO:0001036)	10	35392457	63642539	Rat
1549846	Scl47	Serum cholesterol level QTL 47	3.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	50574707	95574707	Rat
152025229	Scl83	Serum cholesterol level QTL 83	4.33		blood cholesterol amount (VT:0000180)		10	35710580	68663659	Rat
1578779	Tcas10	Tongue tumor susceptibility QTL 10	3.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	10	31297439	76297439	Rat
152025227	Bw195	Body weight QTL 195	5.73		body mass (VT:0001259)		10	46989699	68663659	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	26521957	98003205	Rat
2293669	Bmd33	Bone mineral density QTL 33	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck polar moment of inertia (CMO:0001670)	10	49444551	81709989	Rat
152025224	Bw193	Body weight QTL 193	6.47		body mass (VT:0001259)		10	51663405	75085664	Rat
631552	Vetf2	Vascular elastic tissue fragility QTL 2	4.5	0.0002	aorta elastic tissue integrity trait (VT:0010556)	artery internal elastic lamina non-tumorous lesion count (CMO:0001913)	10	41142633	86142633	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	743364	63851208	Rat
631557	Bp136	Blood pressure QTL 136		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	30632053	75632053	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42045676	104670812	Rat
2293679	Bmd30	Bone mineral density QTL 30	3.5	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	49444551	81709989	Rat
1549831	Bss6	Bone structure and strength QTL 6	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	10	57576521	102576521	Rat
70164	Bw21	Body weight QTL 21	4.36	0.00005	body mass (VT:0001259)	body weight (CMO:0000012)	10	53797494	98952626	Rat
61463	Bp12	Blood pressure QTL 12	6.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	41333258	86333258	Rat
8694173	Bw149	Body weight QTL 149	4.38	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	10	44441699	89441699	Rat
2300218	Hpcl2	Hepatic cholesterol level QTL 2			liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	45029650	95600334	Rat
1554317	Bmd4	Bone mineral density QTL 4	9.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	19816042	99406971	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	0.0005	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	10	53797385	107211142	Rat
1598852	Anxrr19	Anxiety related response QTL 19	5.07		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	10	18167841	63167841	Rat
724527	Bp148	Blood pressure QTL 148		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	28453136	73453136	Rat
1358897	Stresp6	Stress response QTL 6	4.17	0.022	blood norepinephrine amount (VT:0005663)	plasma norepinephrine level (CMO:0001010)	10	35392267	64155584	Rat
1331762	Rf40	Renal function QTL 40	3.873		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	10	29299504	64155584	Rat
2300171	Bmd58	Bone mineral density QTL 58	4.9	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	26944628	71944628	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14487011	89062041	Rat
2313103	Bss80	Bone structure and strength QTL 80	2	0.0001	tibia strength trait (VT:1000284)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	10	62057807	107057807	Rat
2303118	Mamtr7	Mammary tumor resistance QTL 7		0.003	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	9658275	104670812	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	42323132	87323132	Rat
2313105	Bss79	Bone structure and strength QTL 79	1.8	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	62057807	107057807	Rat
9589030	Epfw9	Epididymal fat weight QTL 9	19.24	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	10	44441699	89441699	Rat
10402859	Bp381	Blood pressure QTL 381		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	27606468	72606468	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14487011	107057807	Rat
2293652	Bmd22	Bone mineral density QTL 22	4.9	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	49444551	81709989	Rat
70198	BpQTLcluster9	Blood pressure QTL cluster 9	2.94		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	42323132	87323132	Rat
2306970	Anxrr22	Anxiety related response QTL 22	5.95		fear/anxiety-related behavior trait (VT:1000241)	number of periods of voluntary immobility (CMO:0001045)	10	61345276	98211570	Rat
1359017	Hrtrt21	Heart rate QTL 21	2.4		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	10	51772940	96772940	Rat
2306787	Ean3	Experimental allergic neuritis QTL 3	3.1		nervous system integrity trait (VT:0010566)	body weight loss (CMO:0001399)	10	53797385	66979128	Rat
2312672	Insul15	Insulin level QTL 15		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	10	57134272	102134272	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22427500	90627625	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6154182	73453136	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	51770177	107211142	Rat
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1	80676123	Rat
2317043	Aia7	Adjuvant induced arthritis QTL 7	3.82		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	37565079	82565079	Rat
2317042	Aia20	Adjuvant induced arthritis QTL 20	3.38		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	37565079	82565079	Rat
70363	Bp71	Blood pressure QTL 71		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	61345276	81714865	Rat
61402	Niddm3	Non-insulin dependent diabetes mellitus QTL 3	4.58		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	61345413	82564856	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29299504	107211142	Rat
2313087	Bmd80	Bone mineral density QTL 80	3.2	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	10	19606483	64606483	Rat
70364	Bp72	Blood pressure QTL 72			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	51121100	96121100	Rat
2293698	Bss43	Bone structure and strength QTL 43	5.33	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra cross-sectional area (CMO:0001689)	10	59209888	104209888	Rat
631530	Tls3	T-lymphoma susceptibility QTL 3	0	0.0001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	10	51774612	95600334	Rat
1354608	Cm33	Cardiac mass QTL 33	2.8		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	10	54809292	99809292	Rat
1558643	Cm44	Cardiac mass QTL 44	4.8	0.0000368	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	61345276	99703528	Rat
631535	Cm51	Cardiac mass QTL 51	3		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	10	51786282	91669536	Rat
1576319	Cia29	Collagen induced arthritis QTL 29			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	33973921	78973921	Rat
8552805	Bw145	Body weight QTL 145	2.2		body mass (VT:0001259)	change in body weight to body weight ratio (CMO:0002216)	10	41944526	78307017	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
2293705	Bmd25	Bone mineral density QTL 25	7.1	0.0001	femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	10	49444551	81709989	Rat
1331839	Eae18b	Experimental allergic encephalomyelitis QTL 18b	5.8	0.03	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	10	61248303	67785171	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	40035094	102359817	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14487011	104060283	Rat
7207811	Bmd90	Bone mineral density QTL 90	5.2		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	10	49444551	81709989	Rat
1576311	Pia26	Pristane induced arthritis QTL 26			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	31224026	75632053	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
7411614	Foco18	Food consumption QTL 18		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	44441699	89441699	Rat
631526	Bp76	Blood pressure QTL 76		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	61345413	66743655	Rat
6893336	Cm75	Cardiac mass QTL 75	0.1	0.87	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	61345276	99703528	Rat
631547	Bp87	Blood pressure QTL 87	4.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	47369470	92369470	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6357896	96121100	Rat
2312662	Slep8	Serum leptin concentration QTL 8		0.05	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	10	57134272	102134272	Rat
6893342	Cm78	Cardiac mass QTL 78	0.1	0.88	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	42876766	79813922	Rat
2292441	Bp308	Blood pressure QTL 308			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	27606468	72606468	Rat
2313055	Bw96	Body weight QTL 96	3.6	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	10	19606483	64606483	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	26521957	98952741	Rat
2312668	Scl65	Serum cholesterol level QTL 65		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	57134272	102134272	Rat

RH130019

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	62,339,921 - 62,340,107 (-)	MAPPER	mRatBN7.2
Rnor_6.0	10	62,672,713 - 62,672,953	NCBI	Rnor6.0
Rnor_5.0	10	62,370,279 - 62,370,519	UniSTS	Rnor5.0
Celera	10	61,343,299 - 61,343,484	UniSTS
Cytogenetic Map	10	q26	UniSTS

RH134038

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	62,319,316 - 62,319,529 (-)	MAPPER	mRatBN7.2
Rnor_6.0	10	62,692,082 - 62,692,294	NCBI	Rnor6.0
Rnor_5.0	10	62,389,535 - 62,389,747	UniSTS	Rnor5.0
RGSC_v3.4	10	66,646,807 - 66,647,019	UniSTS	RGSC3.4
Celera	10	61,322,771 - 61,322,983	UniSTS
Cytogenetic Map	10	q26	UniSTS

AW124583

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	62,319,668 - 62,319,815 (-)	MAPPER	mRatBN7.2
Rnor_6.0	10	62,691,796 - 62,691,942	NCBI	Rnor6.0
Rnor_5.0	10	62,389,249 - 62,389,395	UniSTS	Rnor5.0
RGSC_v3.4	10	66,646,521 - 66,646,667	UniSTS	RGSC3.4
Celera	10	61,323,123 - 61,323,269	UniSTS
Cytogenetic Map	10	q26	UniSTS

BE108317

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	62,333,932 - 62,334,087 (-)	MAPPER	mRatBN7.2
Rnor_6.0	10	62,677,732 - 62,677,886	NCBI	Rnor6.0
Rnor_5.0	10	62,375,185 - 62,375,339	UniSTS	Rnor5.0
RGSC_v3.4	10	66,632,409 - 66,632,558	UniSTS	RGSC3.4
Celera	10	61,337,403 - 61,337,557	UniSTS
Cytogenetic Map	10	q26	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001430227	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768134	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768135	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768137	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768138	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775128	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775130	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775135	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775138	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597656	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604091	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604092	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001840225	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001840226	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001840227	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001845268	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001845269	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001845270	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000019946 ⟹ ENSRNOP00000019946

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	62,319,647 - 62,340,253 (-)	Ensembl
Rnor_6.0 Ensembl	10	62,674,561 - 62,690,834 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000056110 ⟹ ENSRNOP00000052960

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	62,319,647 - 62,340,253 (-)	Ensembl
Rnor_6.0 Ensembl	10	62,674,561 - 62,690,845 (+)	Ensembl

RefSeq Acc Id:

XM_008768134 ⟹ XP_008766356

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	62,817,791 - 62,836,456 (-)	NCBI
mRatBN7.2	10	62,319,660 - 62,338,342 (-)	NCBI
Rnor_6.0	10	62,674,418 - 62,691,949 (+)	NCBI

Sequence:

show sequence

CCGCCGCCGCCGCTCGCACATGCCCGAGCCGCAGCCCCGCGAGCAGACAGTACCGGCCGTCCGCCCCGCGGCCCCGGGCCCCGGCTCCCGCGCCGTCCCTCCCCGCGGGCCGGGCGCCGCGGCCCCGG
CATGAGGAGCGGGCGATGATCCCCGCCAACGCCTCCGCCAGGAAGGGGCCCGAGGGCAAGTACCCACTGCACTACCTCGTGTGGCACAACCGCCACCGGGAGCTGGAGAAGGAGGTCCGCGCCGGCCA
GGTGGACATTGAACAGCTGGATCCCCGTGGCCGGACTCCTCTGCACCTGGCCACCACACTGGGGCACCTGGAATGTGCCCGGGTGCTCTTGGCACATGGCGCAGATGTGGGCAGGGAGAATCGCAGTG
GTTGGACAGTGCTGCAGGAGGCTGTGAGCACCAGGGACCTTGAGCTGGTGCAGCTAGTGCTGCGGTATCGGGACTACCAGCGGGTGGTGAAGCGGCTGGCGGGCATCCCCATGCTCTTGGAGAAGCTT
CGAAAGGCCCAGGACTTCTATGTGGAGATGAAATGGGAGTTCACAAGTTGGGTGCCTCTGGTATCCAAGATTTGCCCTAGTGACACCTACAAAGTGTGGAAGAGCGGGCAGAACCTGAGGGTAGACAC
CACGCTTCTGGGCTTTGACCATATGACCTGGCAGAGAGGGAACCGCAGCTTCGTCTTCCGGGGTCAAGACACAAGTGCTGTGGTCATGGAGATTGACCATGACCGCCGTGTGGTATACATGGAGACTC
TGGCGCTGGCCGGGCAGGATCGGGAGCTACTGCTGGCTGCCTCCCAGCCCTCGGAGGAGCAGGTGCTGAGCAGGCTCACCGCACCTGTTGTCACCACACAGCTTGACACCAAGAACATCTCCTTTGAG
AGGAATAAGACTGGCATCCTGGGATGGCGCAGCGAGAAGACAGAGATGGTGAACGGGTACGAGGCCAAGGTATACGGGGCCTCCAATGTGGAGCTCATCACCCGGACACGAACGGAGCATCTGTCGGA
ACAACACAAAGGCAAGGTCAAAGGCTGTAAGACACCTCTGCAGTCTTTCCTGGGAATTGCTGAGCAGCACGGGGGACCCCAAAATGGGACCCTGATCACTCAGACTCTGAGCCAAGCCAATCCCCCTG
CCATCACTGCAGAGGAATACTTCAACCCCAACTTTGAGCTTGGAAACCGGGACATGGGCCGTCCCATGGAACTGACCACCAAGACACAGAAGTTCAAGGCCAAGCTGTGGCTGTGTGAGGAGCATCCC
TTGTCCCTGTGTGAGCAGGTGGCTCCCATCATTGACCTCATGGCTGTCAGCAATGCACTTTTTGCCAAGCTCCGGGACTTCATCACGTTGCGCCTGCCTCCTGGCTTCCCAGTCAAGATTGAAATCCC
GATTTTTCACATCCTCAACGCCCGCATCACCTTCGGGAACCTCAATGGTTGCGATGAGCCAGTGCCCTCCGTGCGAGGTAGCCCCAGCAGCGAGACGCCCTCCCCTGGCAGTGACTCTTCGAGCGTCA
GCAGCTCCAGCTCTACCACCTCCTGCCGCGCCTGTGAGATCTCCCCTGCACTGTTTGAGGCCCCACGTGGCTACAGCGTGCTGGGCGGCCAGCGAGAGCCTTCGACTCGTGATGAGGACGATGACCTG
CTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCGGGCAGTGAGTATGACCAGGTCACTATCTGGGAGGCGCTAACCAACAGCAAACCAGGCACCCACCCCATGTCCTATGAAGGCCGCCGACAGGA
CAGGAGCGCCCCACCCACGCCGCAGCGCCAGCCCATGCCCCCGGCTCCGGTGCCCAGCCCTCGGCCCAGCCCAGGTCCCGGCTCCCGCAGCCACATGTTCCGGAGCTACGACGAGCAGCTGCGGCTGG
CTATGGAGCTGTCAGCTCAGGAGCAGGAGGAGAGGCGGCGGCGAGCGCGCCAGGAGGAGGAAGAGTTGGAGCGGATCCTGCGGCTCTCGTTGACCGAACAGTAGCGCCTCCTGCTGGGACCCTCGCCC
ACTCTACGCAGGACCGGGGTCTGCGCACCTGCCGAGCGGCTGCTGGAGTCTGGAGCCATCGCATTGGGGGTGTAGCAGCGCATCAGGCTTGAGATGCCAGGGGTTTGATACAGGAGCGGAGTAACTTT
CCAGGCCAGAGCCCTAGAGGCATGGCTGGTCTCCCTGCTTTGTTGTACGGTGATCCCTAATCCGCTTCTCTGGGCTCAGATCTGTCCAAGGGCGGAGGCAGGTGGTATCGAAAAGGAAACGAATCCTT
GAGAGGAGCATTGTCCCCGTCCCTTGCTCCTTATGGCTGGTCCTCCTTCTTGCTCACTGACCCCTCTCCAGGACACTGTCCCTGAAGCCTTCGCATCTTAGCTCTTCATCCCTGGGAGGCAGCTGATC
GCCCAGCGTGCTGTGTCGCTGCTTTGTCCCAGACAAACCAGCACGTCAAGGGCCCAGCCCCTCCCCACCCCGGCATTTCAGCGTCAAGTGCACTTAGCGGGGTGCCCAGCTCCCCCAGTTCCCACACC
TGTCCTGTGTCTCAGGGTGGTCCTCGCTTCTCTTTAGGCAGCCAGGAATTGGAATCCCATGCCCGCAGCACGTTTTTCTTGTGATCAGGGAGTGTGTCTAAGGTGGCCCTAGTTTGGGCAAGGCCTGG
TTCCCTCATGGTGCCTTGGGGAATGGGGGCAGCATATTGGCTTGGGGGCAAGCACTAGACTCGACACAAAAGCGTTGGTGAGGGCCCTGGCACCACTATCACCGCCCACCCCTTCCTACCAGCTGCTG
CTAGCCCTCTGTGGTTGTGCACCCTTCCTGCCCCCATTCAGGGGTTGACTAACACCCTTTATCCAATGGTGCTAACCCCGGCTCTCCCTGTTCTACCCTACCCACCTAAAGAAGCACAGGCCCCACGG
AGCAGGGCCCACACCCTTATCCTGGGCTGCCTTCTGGCTGGCTTCTCTCTGCCAGGGGCTCAAAAGGGGCACAAACGTGGGTCAAGAAAAGAGCAACAACGCGAAATTGTTCTTCCTCTTCCCTTCCC
TGATGCCAGGGGCACCAGACTGATTCTGAGGCACAAATAAAAGAGGTTTCAAACCA

hide sequence

RefSeq Acc Id:

XM_008768135 ⟹ XP_008766357

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	62,817,791 - 62,836,456 (-)	NCBI
mRatBN7.2	10	62,319,660 - 62,338,342 (-)	NCBI
Rnor_6.0	10	62,674,416 - 62,691,949 (+)	NCBI

Sequence:

show sequence

GCCCGCCGCCGCCGCTCGCACATGCCCGAGCCGCAGCCCCGCGAGCAGACAGTACCGGCCGTCC
GCCCCGCGGCCCCGGGCCCCGGCTCCCGCGCCGTCCCTCCCCGCGGGCCGGGCGCCGCGGCCCCGGCATGAGGAGCGGGCGATGATCCCCGCCAACGCCTCCGCCAGGAAGGGGCCCGAGGGCAAGTA
CCCACTGCACTACCTCGTGTGGCACAACCGCCACCGGGAGCTGGAGAAGGAGGTCCGCGCCGGCCAGGTGGACATTGAACAGCTGGATCCCCGTGGCCGGACTCCTCTGCACCTGGCCACCACACTGG
GGCACCTGGAATGTGCCCGGGTGCTCTTGGCACATGGCGCAGATGTGGGCAGGGAGAATCGCAGTGGTTGGACAGTGCTGCAGGAGGCTGTGAGCACCAGGGACCTTGAGCTGGTGCAGCTAGTGCTG
CGGTATCGGGACTACCAGCGGGTGGTGAAGCGGCTGGCGGGCATCCCCATGCTCTTGGAGAAGCTTCGAAAGGCCCAGGACTTCTATGTGGAGATGAAATGGGAGTTCACAAGTTGGGTGCCTCTGGT
ATCCAAGATTTGCCCTAGTGACACCTACAAAGTGTGGAAGAGCGGGCAGAACCTGAGGGTAGACACCACGCTTCTGGGCTTTGACCATATGACCTGGCAGAGAGGGAACCGCAGCTTCGTCTTCCGGG
GTCAAGACACAAGTGCTGTGGTCATGGAGATTGACCATGACCGCCGTGTGGTATACATGGAGACTCTGGCGCTGGCCGGGCAGGATCGGGAGCTACTGCTGGCTGCCTCCCAGCCCTCGGAGGAGCAG
GTGCTGAGCAGGCTCACCGCACCTGTTGTCACCACACAGCTTGACACCAAGAACATCTCCTTTGAGAGGAATAAGACTGGCATCCTGGGATGGCGCAGCGAGAAGACAGAGATGGTGAACGGGTACGA
GGCCAAGGTATACGGGGCCTCCAATGTGGAGCTCATCACCCGGACACGAACGGAGCATCTGTCGGAACAACACAAAGGCAAGGTCAAAGGCTGTAAGACACCTCTGCAGTCTTTCCTGGGAATTGCTG
AGCAGCACGGGGGACCCCAAAATGGGACCCTGATCACTCAGACTCTGAGCCAAGCCAATCCCCCTGCCATCACTGCAGAGGAATACTTCAACCCCAACTTTGAGCTTGGAAACCGGGACATGGGCCGT
CCCATGGAACTGACCACCAAGACACAGAAGTTCAAGGCCAAGCTGTGGCTGTGTGAGGAGCATCCCTTGTCCCTGTGTGAGCAGGTGGCTCCCATCATTGACCTCATGGCTGTCAGCAATGCACTTTT
TGCCAAGCTCCGGGACTTCATCACGTTGCGCCTGCCTCCTGGCTTCCCAGTCAAGATTGAAATCCCGATTTTTCACATCCTCAACGCCCGCATCACCTTCGGGAACCTCAATGGTTGCGATGAGCCAG
TGCCCTCCGTGCGAGGTAGCCCCAGCAGCGAGACGCCCTCCCCTGGCAGTGACTCTTCGAGCGTCAGCAGCTCCAGCTCTACCACCTCCTGCCGCGCCTGTGAGATCTCCCCTGCACTGTTTGAGGCC
CCACGTGGCTACAGCGTGCTGGGCGGCCAGCGAGAGCCTTCGACTCGTGATGAGGACGATGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCGGGCAGTGAGTATGACCAGGTCACTAT
CTGGGAGGCGCTAACCAACAGCAAACCAGGCACCCACCCCATGTCCTATGAAGGCCGCCGACAGGACAGGTGTCCCAGGTGTGCCGGGAGCGGGGAGCGCTCGACAAATCCTCCCCGCCCCCAGGAGC
GCCCCACCCACGCCGCAGCGCCAGCCCATGCCCCCGGCTCCGGTGCCCAGCCCTCGGCCCAGCCCAGGTCCCGGCTCCCGCAGCCACATGTTCCGGAGCTACGACGAGCAGCTGCGGCTGGCTATGGA
GCTGTCAGCTCAGGAGCAGGAGGAGAGGCGGCGGCGAGCGCGCCAGGAGGAGGAAGAGTTGGAGCGGATCCTGCGGCTCTCGTTGACCGAACAGTAGCGCCTCCTGCTGGGACCCTCGCCCACTCTAC
GCAGGACCGGGGTCTGCGCACCTGCCGAGCGGCTGCTGGAGTCTGGAGCCATCGCATTGGGGGTGTAGCAGCGCATCAGGCTTGAGATGCCAGGGGTTTGATACAGGAGCGGAGTAACTTTCCAGGCC
AGAGCCCTAGAGGCATGGCTGGTCTCCCTGCTTTGTTGTACGGTGATCCCTAATCCGCTTCTCTGGGCTCAGATCTGTCCAAGGGCGGAGGCAGGTGGTATCGAAAAGGAAACGAATCCTTGAGAGGA
GCATTGTCCCCGTCCCTTGCTCCTTATGGCTGGTCCTCCTTCTTGCTCACTGACCCCTCTCCAGGACACTGTCCCTGAAGCCTTCGCATCTTAGCTCTTCATCCCTGGGAGGCAGCTGATCGCCCAGC
GTGCTGTGTCGCTGCTTTGTCCCAGACAAACCAGCACGTCAAGGGCCCAGCCCCTCCCCACCCCGGCATTTCAGCGTCAAGTGCACTTAGCGGGGTGCCCAGCTCCCCCAGTTCCCACACCTGTCCTG
TGTCTCAGGGTGGTCCTCGCTTCTCTTTAGGCAGCCAGGAATTGGAATCCCATGCCCGCAGCACGTTTTTCTTGTGATCAGGGAGTGTGTCTAAGGTGGCCCTAGTTTGGGCAAGGCCTGGTTCCCTC
ATGGTGCCTTGGGGAATGGGGGCAGCATATTGGCTTGGGGGCAAGCACTAGACTCGACACAAAAGCGTTGGTGAGGGCCCTGGCACCACTATCACCGCCCACCCCTTCCTACCAGCTGCTGCTAGCCC
TCTGTGGTTGTGCACCCTTCCTGCCCCCATTCAGGGGTTGACTAACACCCTTTATCCAATGGTGCTAACCCCGGCTCTCCCTGTTCTACCCTACCCACCTAAAGAAGCACAGGCCCCACGGAGCAGGG
CCCACACCCTTATCCTGGGCTGCCTTCTGGCTGGCTTCTCTCTGCCAGGGGCTCAAAAGGGGCACAAACGTGGGTCAAGAAAAGAGCAACAACGCGAAATTGTTCTTCCTCTTCCCTTCCCTGATGCC
AGGGGCACCAGACTGATTCTGAGGCACAAATAAAAGAGGTTTCAAACCA

hide sequence

RefSeq Acc Id:

XM_008768137 ⟹ XP_008766359

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	62,817,791 - 62,836,456 (-)	NCBI
mRatBN7.2	10	62,320,907 - 62,338,342 (-)	NCBI
Rnor_6.0	10	62,674,419 - 62,690,652 (+)	NCBI

Sequence:

show sequence

CGCCGCCGCCGCTCGCACATGCCCGAGCCGCAGCCCCGCGAGCAGACAGTACCGGCCGTCCGCC
CCGCGGCCCCGGGCCCCGGCTCCCGCGCCGTCCCTCCCCGCGGGCCGGGCGCCGCGGCCCCGGCATGAGGAGCGGGCGATGATCCCCGCCAACGCCTCCGCCAGGAAGGGGCCCGAGGGCAAGTACCC
ACTGCACTACCTCGTGTGGCACAACCGCCACCGGGAGCTGGAGAAGGAGGTCCGCGCCGGCCAGGTGGACATTGAACAGCTGGATCCCCGTGGCCGGACTCCTCTGCACCTGGCCACCACACTGGGGC
ACCTGGAATGTGCCCGGGTGCTCTTGGCACATGGCGCAGATGTGGGCAGGGAGAATCGCAGTGGTTGGACAGTGCTGCAGGAGGCTGTGAGCACCAGGGACCTTGAGCTGGTGCAGCTAGTGCTGCGG
TATCGGGACTACCAGCGGGTGGTGAAGCGGCTGGCGGGCATCCCCATGCTCTTGGAGAAGCTTCGAAAGGCCCAGGACTTCTATGTGGAGATGAAATGGGAGTTCACAAGTTGGGTGCCTCTGGTATC
CAAGATTTGCCCTAGTGACACCTACAAAGTGTGGAAGAGCGGGCAGAACCTGAGGGTAGACACCACGCTTCTGGGCTTTGACCATATGACCTGGCAGAGAGGGAACCGCAGCTTCGTCTTCCGGGGTC
AAGACACAAGTGCTGTGGTCATGGAGATTGACCATGACCGCCGTGTGGTATACATGGAGACTCTGGCGCTGGCCGGGCAGGATCGGGAGCTACTGCTGGCTGCCTCCCAGCCCTCGGAGGAGCAGGTG
CTGAGCAGGCTCACCGCACCTGTTGTCACCACACAGCTTGACACCAAGAACATCTCCTTTGAGAGGAATAAGACTGGCATCCTGGGATGGCGCAGCGAGAAGACAGAGATGGTGAACGGGTACGAGGC
CAAGGTATACGGGGCCTCCAATGTGGAGCTCATCACCCGGACACGAACGGAGCATCTGTCGGAACAACACAAAGGCAAGGTCAAAGGCTGTAAGACACCTCTGCAGTCTTTCCTGGGAATTGCTGAGC
AGCACGGGGGACCCCAAAATGGGACCCTGATCACTCAGACTCTGAGCCAAGCCAATCCCCCTGCCATCACTGCAGAGGAATACTTCAACCCCAACTTTGAGCTTGGAAACCGGGACATGGGCCGTCCC
ATGGAACTGACCACCAAGACACAGAAGTTCAAGGCCAAGCTGTGGCTGTGTGAGGAGCATCCCTTGTCCCTGTGTGAGCAGGTGGCTCCCATCATTGACCTCATGGCTGTCAGCAATGCACTTTTTGC
CAAGCTCCGGGACTTCATCACGTTGCGCCTGCCTCCTGGCTTCCCAGTCAAGATTGAAATCCCGATTTTTCACATCCTCAACGCCCGCATCACCTTCGGGAACCTCAATGGTTGCGATGAGCCAGTGC
CCTCCGTGCGAGGTAGCCCCAGCAGCGAGACGCCCTCCCCTGGCAGTGACTCTTCGAGCGTCAGCAGCTCCAGCTCTACCACCTCCTGCCGCGCCTGTGAGATCTCCCCTGCACTGTTTGAGGCCCCA
CGTGGCTACAGCGTGCTGGGCGGCCAGCGAGAGCCTTCGACTCGTGATGAGGACGATGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCGGGCAGTGAGTATGACCAGGTCACTATCTG
GGAGGCGCTAACCAACAGCAAACCAGGCACCCACCCCATGTCCTATGAAGGCCGCCGACAGGACAGGGTGGGTGGCCGGTGCTCCAGGCATGTGCAGACATCAGGGACCTAGCTCCCTGGACCTTCAG
ACCCTCAACAACAGACAGGTTGGCGGGACCTGGGATCTGCCACCACTGGGTGGGGCCAGGACAGCCCAGCGAGACTCATGGCTTCCCCTAGAGGGTGGCAAGCCTGCCCAGCCCTGGGACCTCCACGA
TGTCTCCTGCCCCGCTTACGAGCAGGTGTCCCAGGTGTGCCGGGAGCGGGGAGCGCTCGACAAATCCTCCCCGCCCCCAGGAGCGCCCCACCCACGCCGCAGCGCCAGCCCATGCC

hide sequence

RefSeq Acc Id:

XM_008768138 ⟹ XP_008766360

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	62,819,018 - 62,836,456 (-)	NCBI
mRatBN7.2	10	62,320,870 - 62,338,342 (-)	NCBI
Rnor_6.0	10	62,674,419 - 62,690,707 (+)	NCBI

Sequence:

show sequence

CGCCGCCGCCGCTCGCACATGCCCGAGCCGCAGCCCCGCGAGCAGACAGTACCGGCCGTCCGCCCCGCGGCCCCGGGCCCCGGCTCCCGCGCCGTCCCTCCCCGCGGGCCGGGCGCCGCGGCCCCGGC
ATGAGGAGCGGGCGATGATCCCCGCCAACGCCTCCGCCAGGAAGGGGCCCGAGGGCAAGTACCCACTGCACTACCTCGTGTGGCACAACCGCCACCGGGAGCTGGAGAAGGAGGTCCGCGCCGGCCAG
GTGGACATTGAACAGCTGGATCCCCGTGGCCGGACTCCTCTGCACCTGGCCACCACACTGGGGCACCTGGAATGTGCCCGGGTGCTCTTGGCACATGGCGCAGATGTGGGCAGGGAGAATCGCAGTGG
TTGGACAGTGCTGCAGGAGGCTGTGAGCACCAGGGACCTTGAGCTGGTGCAGCTAGTGCTGCGGTATCGGGACTACCAGCGGGTGGTGAAGCGGCTGGCGGGCATCCCCATGCTCTTGGAGAAGCTTC
GAAAGGCCCAGGACTTCTATGTGGAGATGAAATGGGAGTTCACAAGTTGGGTGCCTCTGGTATCCAAGATTTGCCCTAGTGACACCTACAAAGTGTGGAAGAGCGGGCAGAACCTGAGGGTAGACACC
ACGCTTCTGGGCTTTGACCATATGACCTGGCAGAGAGGGAACCGCAGCTTCGTCTTCCGGGGTCAAGACACAAGTGCTGTGGTCATGGAGATTGACCATGACCGCCGTGTGGTATACATGGAGACTCT
GGCGCTGGCCGGGCAGGATCGGGAGCTACTGCTGGCTGCCTCCCAGCCCTCGGAGGAGCAGGTGCTGAGCAGGCTCACCGCACCTGTTGTCACCACACAGCTTGACACCAAGAACATCTCCTTTGAGA
GGAATAAGACTGGCATCCTGGGATGGCGCAGCGAGAAGACAGAGATGGTGAACGGGTACGAGGCCAAGGTATACGGGGCCTCCAATGTGGAGCTCATCACCCGGACACGAACGGAGCATCTGTCGGAA
CAACACAAAGGCAAGGTCAAAGGCTGTAAGACACCTCTGCAGTCTTTCCTGGGAATTGCTGAGCAGCACGGGGGACCCCAAAATGGGACCCTGATCACTCAGACTCTGAGCCAAGCCAATCCCCCTGC
CATCACTGCAGAGGAATACTTCAACCCCAACTTTGAGCTTGGAAACCGGGACATGGGCCGTCCCATGGAACTGACCACCAAGACACAGAAGTTCAAGGCCAAGCTGTGGCTGTGTGAGGAGCATCCCT
TGTCCCTGTGTGAGCAGGTGGCTCCCATCATTGACCTCATGGCTGTCAGCAATGCACTTTTTGCCAAGCTCCGGGACTTCATCACGTTGCGCCTGCCTCCTGGCTTCCCAGTCAAGATTGAAATCCCG
ATTTTTCACATCCTCAACGCCCGCATCACCTTCGGGAACCTCAATGGTTGCGATGAGCCAGTGCCCTCCGTGCGAGGTAGCCCCAGCAGCGAGACGCCCTCCCCTGGCAGTGACTCTTCGAGCGTCAG
CAGCTCCAGCTCTACCACCTCCTGCCGCGCCTGTGAGATCTCCCCTGCACTGTTTGAGGCCCCACGTGGCTACAGCGTGCTGGGCGGCCAGCGAGAGCCTTCGACTCGTGATGAGGACGATGACCTGC
TGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCGGGCAGTGAGTATGACCAGGTCACTATCTGGGAGGCGCTAACCAACAGCAAACCAGGCACCCACCCCATGTCCTATGAAGGCCGCCGACAGGAC
AGGGTGGGTGGCCGGTGCTCCAGGCATGTGCAGACATCAGGGACCTAGCTCCCTGGACCTTCAGACCCTCAACAACAGACAGGAGCGCCCCACCCACGCCGCAGCGCCAGCCCATGCCCCCGGCTCCG
GTGCCCAGCCCTCGGCCCAGCCCAGGTCCCGGCTCCCGCAGCCAC

hide sequence

RefSeq Acc Id:

XM_017597656 ⟹ XP_017453145

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	62,819,104 - 62,836,456 (-)	NCBI
mRatBN7.2	10	62,320,938 - 62,338,342 (-)	NCBI
Rnor_6.0	10	62,674,419 - 62,690,652 (+)	NCBI

Sequence:

show sequence

CGCCGCCGCCGCTCGCACATGCCCGAGCCGCAGCCCCGCGAGCAGACAGTACCGGCCGTCCGCC
CCGCGGCCCCGGGCCCCGGCTCCCGCGCCGTCCCTCCCCGCGGGCCGGGCGCCGCGGCCCCGGCATGAGGAGCGGGCGATGATCCCCGCCAACGCCTCCGCCAGGAAGGGGCCCGAGGGCAAGTACCC
ACTGCACTACCTCGTGTGGCACAACCGCCACCGGGAGCTGGAGAAGGAGGTCCGCGCCGGCCAGGTGGACATTGAACAGCTGGATCCCCGTGGCCGGACTCCTCTGCACCTGGCCACCACACTGGGGC
ACCTGGAATGTGCCCGGGTGCTCTTGGCACATGGCGCAGATGTGGGCAGGGAGAATCGCAGTGGTTGGACAGTGCTGCAGGAGGCTGTGAGCACCAGGGACCTTGAGCTGGTGCAGCTAGTGCTGCGG
TATCGGGACTACCAGCGGGTGGTGAAGCGGCTGGCGGGCATCCCCATGCTCTTGGAGAAGCTTCGAAAGGCCCAGGACTTCTATGTGGAGATGAAATGGGAGTTCACAAGTTGGGTGCCTCTGGTATC
CAAGATTTGCCCTAGTGACACCTACAAAGTGTGGAAGAGCGGGCAGAACCTGAGGGTAGACACCACGCTTCTGGGCTTTGACCATATGACCTGGCAGAGAGGGAACCGCAGCTTCGTCTTCCGGGGTC
AAGACACAAGTGCTGTGGTCATGGAGATTGACCATGACCGCCGTGTGGTATACATGGAGACTCTGGCGCTGGCCGGGCAGGATCGGGAGCTACTGCTGGCTGCCTCCCAGCCCTCGGAGGAGCAGGTG
CTGAGCAGGCTCACCGCACCTGTTGTCACCACACAGCTTGACACCAAGAACATCTCCTTTGAGAGGAATAAGACTGGCATCCTGGGATGGCGCAGCGAGAAGACAGAGATGGTGAACGGGTACGAGGC
CAAGGTATACGGGGCCTCCAATGTGGAGCTCATCACCCGGACACGAACGGAGCATCTGTCGGAACAACACAAAGGCAAGGTCAAAGGCTGTAAGACACCTCTGCAGTCTTTCCTGGGAATTGCTGAGC
AGCACGGGGGACCCCAAAATGGGACCCTGATCACTCAGACTCTGAGCCAAGCCAATCCCCCTGCCATCACTGCAGAGGAATACTTCAACCCCAACTTTGAGCTTGGAAACCGGGACATGGGCCGTCCC
ATGGAACTGACCACCAAGACACAGAAGTTCAAGGCCAAGCTGTGGCTGTGTGAGGAGCATCCCTTGTCCCTGTGTGAGCAGGTGGCTCCCATCATTGACCTCATGGCTGTCAGCAATGCACTTTTTGC
CAAGCTCCGGGACTTCATCACGTTGCGCCTGCCTCCTGGCTTCCCAGTCAAGATTGAAATCCCGATTTTTCACATCCTCAACGCCCGCATCACCTTCGGGAACCTCAATGGTTGCGATGAGCCAGTGC
CCTCCGTGCGAGGTAGCCCCAGCAGCGAGACGCCCTCCCCTGGCAGTGACTCTTCGAGCGTCAGCAGCTCCAGCTCTACCACCTCCTGCCGCGCCTGTGAGATCTCCCCTGCACTGTTTGAGGCCCCA
CGTGGCTACAGCGTGCTGGGCGGCCAGCGAGAGCCTTCGACTCGTGATGAGGACGATGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCGGGCAGTGAGTATGACCAGGTCACTATCTG
GGAGGCGCTAACCAACAGCAAACCAGGCACCCACCCCATGTCCTATGAAGGCCGCCGACAGGACAGGGTGGGTGGCCGGTGCTCCAGGCATGTGCAGACATCAGGGACCTAGCTCCCTGGACCTTCAG
ACCCTCAACAACAGACAGGTGTCCCAGGTGTGCCGGGAGCGGGGAGCGCTCGACAAATCCTCCCCGCCCCCAGGAGCGCCCCACCCACGCCGCAGCGCCAGCCCATGCC

hide sequence


Protein RefSeqs	NP_001417156	(Get FASTA)	NCBI Sequence Viewer
	XP_008766356	(Get FASTA)	NCBI Sequence Viewer
	XP_008766357	(Get FASTA)	NCBI Sequence Viewer
	XP_008766359	(Get FASTA)	NCBI Sequence Viewer
	XP_008766360	(Get FASTA)	NCBI Sequence Viewer
	XP_017453145	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM05283	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000019946.7
	ENSRNOP00000052960
	ENSRNOP00000052960.3
	ENSRNOP00000111276

RefSeq Acc Id:	XP_008766357 ⟸ XM_008768135
- Peptide Label:	isoform X1
- UniProtKB:	D4A1M1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MIPANASARKGPEGKYPLHYLVWHNRHRELEKEVRAGQVDIEQLDPRGRTPLHLATTLGHLECARVLLAHGADVGRENRSGWTVLQEAVSTRDLELVQLVLRYRDYQRVVKRLAGIPMLLEKLRKAQD FYVEMKWEFTSWVPLVSKICPSDTYKVWKSGQNLRVDTTLLGFDHMTWQRGNRSFVFRGQDTSAVVMEIDHDRRVVYMETLALAGQDRELLLAASQPSEEQVLSRLTAPVVTTQLDTKNISFERNKTG ILGWRSEKTEMVNGYEAKVYGASNVELITRTRTEHLSEQHKGKVKGCKTPLQSFLGIAEQHGGPQNGTLITQTLSQANPPAITAEEYFNPNFELGNRDMGRPMELTTKTQKFKAKLWLCEEHPLSLCE QVAPIIDLMAVSNALFAKLRDFITLRLPPGFPVKIEIPIFHILNARITFGNLNGCDEPVPSVRGSPSSETPSPGSDSSSVSSSSSTTSCRACEISPALFEAPRGYSVLGGQREPSTRDEDDDLLQFAI QQSLLEAGSEYDQVTIWEALTNSKPGTHPMSYEGRRQDRCPRCAGSGERSTNPPRPQERPTHAAAPAHAPGSGAQPSAQPRSRLPQPHVPELRRAAAAGYGAVSSGAGGEAAASAPGGGRVGADPAAL VDRTVAPPAGTLAHSTQDRGLRTCRAAAGVWSHRIGGVAAHQA hide sequence

RefSeq Acc Id:	XP_008766356 ⟸ XM_008768134
- Peptide Label:	isoform X2
- UniProtKB:	D4A1M1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MIPANASARKGPEGKYPLHYLVWHNRHRELEKEVRAGQVDIEQLDPRGRTPLHLATTLGHLECA RVLLAHGADVGRENRSGWTVLQEAVSTRDLELVQLVLRYRDYQRVVKRLAGIPMLLEKLRKAQDFYVEMKWEFTSWVPLVSKICPSDTYKVWKSGQNLRVDTTLLGFDHMTWQRGNRSFVFRGQDTSA VVMEIDHDRRVVYMETLALAGQDRELLLAASQPSEEQVLSRLTAPVVTTQLDTKNISFERNKTGILGWRSEKTEMVNGYEAKVYGASNVELITRTRTEHLSEQHKGKVKGCKTPLQSFLGIAEQHGGP QNGTLITQTLSQANPPAITAEEYFNPNFELGNRDMGRPMELTTKTQKFKAKLWLCEEHPLSLCEQVAPIIDLMAVSNALFAKLRDFITLRLPPGFPVKIEIPIFHILNARITFGNLNGCDEPVPSVRG SPSSETPSPGSDSSSVSSSSSTTSCRACEISPALFEAPRGYSVLGGQREPSTRDEDDDLLQFAIQQSLLEAGSEYDQVTIWEALTNSKPGTHPMSYEGRRQDRSAPPTPQRQPMPPAPVPSPRPSPGP GSRSHMFRSYDEQLRLAMELSAQEQEERRRRARQEEEELERILRLSLTEQ hide sequence

RefSeq Acc Id:

XP_008766359 ⟸ XM_008768137

- Peptide Label:

isoform X3

- Sequence:

show sequence

MIPANASARKGPEGKYPLHYLVWHNRHRELEKEVRAGQVDIEQLDPRGRTPLHLATTLGHLECA
RVLLAHGADVGRENRSGWTVLQEAVSTRDLELVQLVLRYRDYQRVVKRLAGIPMLLEKLRKAQDFYVEMKWEFTSWVPLVSKICPSDTYKVWKSGQNLRVDTTLLGFDHMTWQRGNRSFVFRGQDTSA
VVMEIDHDRRVVYMETLALAGQDRELLLAASQPSEEQVLSRLTAPVVTTQLDTKNISFERNKTGILGWRSEKTEMVNGYEAKVYGASNVELITRTRTEHLSEQHKGKVKGCKTPLQSFLGIAEQHGGP
QNGTLITQTLSQANPPAITAEEYFNPNFELGNRDMGRPMELTTKTQKFKAKLWLCEEHPLSLCEQVAPIIDLMAVSNALFAKLRDFITLRLPPGFPVKIEIPIFHILNARITFGNLNGCDEPVPSVRG
SPSSETPSPGSDSSSVSSSSSTTSCRACEISPALFEAPRGYSVLGGQREPSTRDEDDDLLQFAIQQSLLEAGSEYDQVTIWEALTNSKPGTHPMSYEGRRQDRVGGRCSRHVQTSGT

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RefSeq Acc Id:	XP_008766360 ⟸ XM_008768138
- Peptide Label:	isoform X3
- UniProtKB:	D4A6I3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MIPANASARKGPEGKYPLHYLVWHNRHRELEKEVRAGQVDIEQLDPRGRTPLHLATTLGHLECARVLLAHGADVGRENRSGWTVLQEAVSTRDLELVQLVLRYRDYQRVVKRLAGIPMLLEKLRKAQD FYVEMKWEFTSWVPLVSKICPSDTYKVWKSGQNLRVDTTLLGFDHMTWQRGNRSFVFRGQDTSAVVMEIDHDRRVVYMETLALAGQDRELLLAASQPSEEQVLSRLTAPVVTTQLDTKNISFERNKTG ILGWRSEKTEMVNGYEAKVYGASNVELITRTRTEHLSEQHKGKVKGCKTPLQSFLGIAEQHGGPQNGTLITQTLSQANPPAITAEEYFNPNFELGNRDMGRPMELTTKTQKFKAKLWLCEEHPLSLCE QVAPIIDLMAVSNALFAKLRDFITLRLPPGFPVKIEIPIFHILNARITFGNLNGCDEPVPSVRGSPSSETPSPGSDSSSVSSSSSTTSCRACEISPALFEAPRGYSVLGGQREPSTRDEDDDLLQFAI QQSLLEAGSEYDQVTIWEALTNSKPGTHPMSYEGRRQDRVGGRCSRHVQTSGT hide sequence

RefSeq Acc Id:	XP_017453145 ⟸ XM_017597656
- Peptide Label:	isoform X3
- UniProtKB:	D4A6I3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MIPANASARKGPEGKYPLHYLVWHNRHRELEKEVRAGQVDIEQLDPRGRTPLHLATTLGHLECA RVLLAHGADVGRENRSGWTVLQEAVSTRDLELVQLVLRYRDYQRVVKRLAGIPMLLEKLRKAQDFYVEMKWEFTSWVPLVSKICPSDTYKVWKSGQNLRVDTTLLGFDHMTWQRGNRSFVFRGQDTSA VVMEIDHDRRVVYMETLALAGQDRELLLAASQPSEEQVLSRLTAPVVTTQLDTKNISFERNKTGILGWRSEKTEMVNGYEAKVYGASNVELITRTRTEHLSEQHKGKVKGCKTPLQSFLGIAEQHGGP QNGTLITQTLSQANPPAITAEEYFNPNFELGNRDMGRPMELTTKTQKFKAKLWLCEEHPLSLCEQVAPIIDLMAVSNALFAKLRDFITLRLPPGFPVKIEIPIFHILNARITFGNLNGCDEPVPSVRG SPSSETPSPGSDSSSVSSSSSTTSCRACEISPALFEAPRGYSVLGGQREPSTRDEDDDLLQFAIQQSLLEAGSEYDQVTIWEALTNSKPGTHPMSYEGRRQDRVGGRCSRHVQTSGT hide sequence

Protein Domains

Ankyrin repeat

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A6I3-F1-model_v2	AlphaFold	D4A6I3	1-696	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-24128	BioCyc
Ensembl Genes	ENSRNOG00000014742	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000019946.8	UniProtKB/TrEMBL
	ENSRNOT00000056110	ENTREZGENE
	ENSRNOT00000056110.4	UniProtKB/TrEMBL
	ENSRNOT00000145817	ENTREZGENE
Gene3D-CATH	1.25.40.20	UniProtKB/TrEMBL
InterPro	ANKRD13_C	UniProtKB/TrEMBL
	Ankyrin_rpt	UniProtKB/TrEMBL
	Ankyrin_rpt-contain_sf	UniProtKB/TrEMBL
	DUF3424	UniProtKB/TrEMBL
	Ubiquitin-int_motif	UniProtKB/TrEMBL
NCBI Gene	360575	ENTREZGENE
PANTHER	ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 13B	UniProtKB/TrEMBL
	PTHR12447	UniProtKB/TrEMBL
Pfam	Ank_2	UniProtKB/TrEMBL
	DUF3424	UniProtKB/TrEMBL
PhenoGen	Ankrd13b	PhenoGen
PROSITE	ANK_REP_REGION	UniProtKB/TrEMBL
	ANK_REPEAT	UniProtKB/TrEMBL
	UIM	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000014742	RatGTEx
SMART	ANK	UniProtKB/TrEMBL
Superfamily-SCOP	ANK	UniProtKB/TrEMBL
UniProt	D4A1M1	ENTREZGENE, UniProtKB/TrEMBL
	D4A6I3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2010-05-05	Ankrd13b	ankyrin repeat domain 13B	RGD1564005	similar to novel protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1564005	similar to novel protein	RGD1564005_predicted	similar to novel protein (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1564005_predicted	similar to novel protein (predicted)	LOC360575	similar to novel protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC360575	similar to novel protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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Imported Disease Annotations - ClinVar