Ankrd13b (ankyrin repeat domain 13B) - Rat Genome Database

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Gene: Ankrd13b (ankyrin repeat domain 13B) Rattus norvegicus
Analyze
Symbol: Ankrd13b
Name: ankyrin repeat domain 13B
RGD ID: 1564005
Description: Predicted to enable ubiquitin-modified protein reader activity. Predicted to be involved in negative regulation of receptor internalization. Predicted to be located in endosome; perinuclear region of cytoplasm; and plasma membrane. Predicted to be active in cytoplasm. Orthologous to human ANKRD13B (ankyrin repeat domain 13B); INTERACTS WITH (+)-schisandrin B; furan; tetrachloromethane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ankyrin repeat domain-containing protein 13B; LOC360575; RGD1564005; similar to novel protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81062,817,791 - 62,836,456 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1062,817,778 - 62,836,635 (-)EnsemblGRCr8
mRatBN7.21062,319,660 - 62,338,342 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1062,319,647 - 62,340,253 (-)EnsemblmRatBN7.2
Rnor_6.01062,674,416 - 62,691,949 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1062,674,561 - 62,690,845 (+)Ensemblrn6Rnor6.0
Rnor_5.01062,371,873 - 62,389,402 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41066,628,069 - 66,646,674 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1061,323,116 - 61,341,905 (-)NCBICelera
Cytogenetic Map10q24NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA,ISO)
early endosome  (IEA,ISO)
late endosome  (IBA,IEA,ISO)
perinuclear region of cytoplasm  (IEA,ISO)
plasma membrane  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:22298428  


Genomics

Comparative Map Data
Ankrd13b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81062,817,791 - 62,836,456 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1062,817,778 - 62,836,635 (-)EnsemblGRCr8
mRatBN7.21062,319,660 - 62,338,342 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1062,319,647 - 62,340,253 (-)EnsemblmRatBN7.2
Rnor_6.01062,674,416 - 62,691,949 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1062,674,561 - 62,690,845 (+)Ensemblrn6Rnor6.0
Rnor_5.01062,371,873 - 62,389,402 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41066,628,069 - 66,646,674 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1061,323,116 - 61,341,905 (-)NCBICelera
Cytogenetic Map10q24NCBI
ANKRD13B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381729,593,132 - 29,614,761 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1729,589,769 - 29,614,761 (+)Ensemblhg38GRCh38
GRCh371727,920,150 - 27,941,779 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361724,944,653 - 24,965,905 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1724,781,393 - 24,802,648 (+)NCBICelera
Cytogenetic Map17q11.2NCBI
HuRef1724,129,928 - 24,151,179 (+)NCBIHuRef
CHM1_11727,983,046 - 28,004,250 (+)NCBICHM1_1
T2T-CHM13v2.01730,536,010 - 30,557,662 (+)NCBIT2T-CHM13v2.0
Ankrd13b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391177,361,311 - 77,380,868 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1177,361,311 - 77,380,504 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381177,470,485 - 77,490,042 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1177,470,485 - 77,489,678 (-)Ensemblmm10GRCm38
MGSCv371177,283,989 - 77,303,180 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361177,286,441 - 77,289,267 (-)NCBIMGSCv36mm8
Celera1184,969,048 - 84,988,239 (-)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1146.59NCBI
Ankrd13b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554813,644,332 - 3,661,895 (-)Ensembl
ChiLan1.0NW_0049554813,644,332 - 3,662,375 (-)NCBIChiLan1.0ChiLan1.0
ANKRD13B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21934,841,569 - 34,866,687 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11736,723,685 - 36,748,848 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01727,159,796 - 27,181,528 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11727,676,809 - 27,684,179 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1727,676,809 - 27,684,253 (-)EnsemblpanPan2panpan1.1
ANKRD13B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1943,696,334 - 43,713,888 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl943,696,398 - 43,714,912 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha942,849,401 - 42,867,986 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0944,512,483 - 44,530,865 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl944,512,507 - 44,530,855 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1943,296,847 - 43,315,433 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0943,587,526 - 43,604,739 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0943,667,644 - 43,686,231 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ankrd13b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560242,827,079 - 42,846,390 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365385,705,026 - 5,724,335 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365385,700,063 - 5,724,335 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKRD13B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1245,787,684 - 45,805,999 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11245,787,661 - 45,806,003 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21247,926,026 - 47,946,281 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ANKRD13B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11623,329,783 - 23,354,522 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1623,333,688 - 23,353,340 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660756,717,954 - 6,740,674 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ankrd13b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247862,090,946 - 2,108,717 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247862,091,030 - 2,108,736 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ankrd13b
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1996,141,930 - 96,160,536 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ankrd13b
94 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:142
Count of miRNA genes:69
Interacting mature miRNAs:72
Transcripts:ENSRNOT00000019946, ENSRNOT00000056110
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61441Btemp1Thermal response to stress QTL 14body temperature trait (VT:0005535)core body temperature (CMO:0001036)103589345164140567Rat
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105107189796071897Rat
152025229Scl83Serum cholesterol level QTL 834.33blood cholesterol amount (VT:0000180)103621155669161158Rat
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103179628176796281Rat
152025227Bw195Body weight QTL 1955.73body mass (VT:0001259)104748901769161158Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102702353598502431Rat
2293669Bmd33Bone mineral density QTL 334.50.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)102744378772443787Rat
152025224Bw193Body weight QTL 1936.47body mass (VT:0001259)105216243375582749Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)103550938391417879Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10125055464349221Rat
631557Bp136Blood pressure QTL 1360.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)105686844076129113Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042546145107713808Rat
2293679Bmd30Bone mineral density QTL 303.50.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)102744378772443787Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1058073360103073360Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)101993920764939207Rat
61332Eau3Experimental allergic uveoretinitis QTL 30.004uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)101803578263035782Rat
70164Bw21Body weight QTL 214.360.00005body mass (VT:0001259)body weight (CMO:0000012)105429633699451733Rat
61463Bp12Blood pressure QTL 126.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104183127886831278Rat
1579919Bp281Blood pressure QTL 2810.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105046480295464802Rat
2300218Hpcl2Hepatic cholesterol level QTL 2liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)104552916496099749Rat
8694173Bw149Body weight QTL 1494.380.001body mass (VT:0001259)body weight gain (CMO:0000420)104493935989939359Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1054296227107713808Rat
1598852Anxrr19Anxiety related response QTL 195.07body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)101866841963668419Rat
10450493Bp382Blood pressure QTL 3820.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105086028895860288Rat
724527Bp148Blood pressure QTL 1480.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102895035373950353Rat
1358897Stresp6Stress response QTL 64.170.022blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)103589326364653589Rat
1331762Rf40Renal function QTL 403.873kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)102980091064653589Rat
2300171Bmd58Bone mineral density QTL 584.90.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)102744378772443787Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101499153586964295Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062556066107556066Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)14282327487823274Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062556066107556066Rat
9589030Epfw9Epididymal fat weight QTL 919.240.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)104493935989939359Rat
2293652Bmd22Bone mineral density QTL 224.90.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)102744378772443787Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014991535107556066Rat
70198BpQTLcluster9Blood pressure QTL cluster 92.94arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)104282327487823274Rat
2306970Anxrr22Anxiety related response QTL 225.95fear/anxiety-related behavior trait (VT:1000241)number of periods of voluntary immobility (CMO:0001045)106184349698710773Rat
2306787Ean3Experimental allergic neuritis QTL 33.1nervous system integrity trait (VT:0010566)body weight loss (CMO:0001399)105429622767476781Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102293137391127454Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10666092373950353Rat
2306792Ean4Experimental allergic neuritis QTL 44nervous system integrity trait (VT:0010566)IFNG-secreting splenocyte count (CMO:0002122)104949549294495492Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1052269185107713808Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101553301273695498Rat
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)102466212373695339Rat
2298480Eau7Experimental allergic uveoretinitis QTL 70.0049uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)103550938380509383Rat
70363Bp71Blood pressure QTL 710.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1061843496106843496Rat
61402Niddm3Non-insulin dependent diabetes mellitus QTL 34.58blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)106184363383061236Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)102980091091417879Rat
2313087Bmd80Bone mineral density QTL 803.20.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)102011061465110614Rat
2289985Bp305Blood pressure QTL 305arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102907697874076978Rat
631530Tls3T-lymphoma susceptibility QTL 300.0001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)102758722696099902Rat
1354608Cm33Cardiac mass QTL 332.8heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)105530797293608131Rat
1558643Cm44Cardiac mass QTL 444.80.0000368heart mass (VT:0007028)heart wet weight (CMO:0000069)1061843496100198886Rat
631532Cm50Cardiac mass QTL 506.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)101803578263035782Rat
8552805Bw145Body weight QTL 1452.2body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)104360879388608793Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
1331839Eae18bExperimental allergic encephalomyelitis QTL 18b5.80.03nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)106174653268282731Rat
2293705Bmd25Bone mineral density QTL 257.10.0001femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)102744378772443787Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040535708107713808Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040535708107713808Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014991535107713808Rat
7207811Bmd90Bone mineral density QTL 905.2femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)104994371094943710Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040535708107713808Rat
631526Bp76Blood pressure QTL 760.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)106184363367241334Rat
1576311Pia26Pristane induced arthritis QTL 26joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103112911376129113Rat
7411614Foco18Food consumption QTL 180.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)104493935989939359Rat
6893336Cm75Cardiac mass QTL 750.10.87heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)1061843496100198886Rat
631547Bp87Blood pressure QTL 874.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104786912992869129Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10686461896620484Rat
2292436Bp310Blood pressure QTL 310arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105060467795604677Rat
12880050Am10Aortic mass QTL 100.016aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)103950348784503487Rat
6893342Cm78Cardiac mass QTL 780.10.88heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)103550938388177745Rat
634354Rends3Renal damage susceptibility QTL 30.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)1061997479106997479Rat
2313055Bw96Body weight QTL 963.60.0001body mass (VT:0001259)body weight (CMO:0000012)102011061465110614Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102702353599451848Rat

Markers in Region
RH130019  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21062,339,921 - 62,340,107 (-)MAPPERmRatBN7.2
Rnor_6.01062,672,713 - 62,672,953NCBIRnor6.0
Rnor_5.01062,370,279 - 62,370,519UniSTSRnor5.0
Celera1061,343,299 - 61,343,484UniSTS
Cytogenetic Map10q26UniSTS
RH134038  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21062,319,316 - 62,319,529 (-)MAPPERmRatBN7.2
Rnor_6.01062,692,082 - 62,692,294NCBIRnor6.0
Rnor_5.01062,389,535 - 62,389,747UniSTSRnor5.0
RGSC_v3.41066,646,807 - 66,647,019UniSTSRGSC3.4
Celera1061,322,771 - 61,322,983UniSTS
Cytogenetic Map10q26UniSTS
AW124583  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21062,319,668 - 62,319,815 (-)MAPPERmRatBN7.2
Rnor_6.01062,691,796 - 62,691,942NCBIRnor6.0
Rnor_5.01062,389,249 - 62,389,395UniSTSRnor5.0
RGSC_v3.41066,646,521 - 66,646,667UniSTSRGSC3.4
Celera1061,323,123 - 61,323,269UniSTS
Cytogenetic Map10q26UniSTS
BE108317  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21062,333,932 - 62,334,087 (-)MAPPERmRatBN7.2
Rnor_6.01062,677,732 - 62,677,886NCBIRnor6.0
Rnor_5.01062,375,185 - 62,375,339UniSTSRnor5.0
RGSC_v3.41066,632,409 - 66,632,558UniSTSRGSC3.4
Celera1061,337,403 - 61,337,557UniSTS
Cytogenetic Map10q26UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 160 91 90 59 92 59 6 356 192 11 139 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001430227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001840225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001840226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001840227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001845268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001845269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001845270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000019946   ⟹   ENSRNOP00000019946
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1062,817,905 - 62,836,635 (-)Ensembl
mRatBN7.2 Ensembl1062,319,647 - 62,340,253 (-)Ensembl
Rnor_6.0 Ensembl1062,674,561 - 62,690,834 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000056110   ⟹   ENSRNOP00000052960
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1062,817,778 - 62,836,635 (-)Ensembl
mRatBN7.2 Ensembl1062,319,647 - 62,340,253 (-)Ensembl
Rnor_6.0 Ensembl1062,674,561 - 62,690,845 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000145817   ⟹   ENSRNOP00000111276
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1062,819,314 - 62,836,635 (-)Ensembl
RefSeq Acc Id: XM_008768134   ⟹   XP_008766356
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81062,817,791 - 62,836,456 (-)NCBI
mRatBN7.21062,319,660 - 62,338,342 (-)NCBI
Rnor_6.01062,674,418 - 62,691,949 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008768135   ⟹   XP_008766357
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81062,817,791 - 62,836,456 (-)NCBI
mRatBN7.21062,319,660 - 62,338,342 (-)NCBI
Rnor_6.01062,674,416 - 62,691,949 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008768137   ⟹   XP_008766359
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81062,817,791 - 62,836,456 (-)NCBI
mRatBN7.21062,320,907 - 62,338,342 (-)NCBI
Rnor_6.01062,674,419 - 62,690,652 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008768138   ⟹   XP_008766360
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81062,819,018 - 62,836,456 (-)NCBI
mRatBN7.21062,320,870 - 62,338,342 (-)NCBI
Rnor_6.01062,674,419 - 62,690,707 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017597656   ⟹   XP_017453145
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81062,819,104 - 62,836,456 (-)NCBI
mRatBN7.21062,320,938 - 62,338,342 (-)NCBI
Rnor_6.01062,674,419 - 62,690,652 (+)NCBI
Sequence:
RefSeq Acc Id: XP_008766357   ⟸   XM_008768135
- Peptide Label: isoform X1
- UniProtKB: D4A1M1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008766356   ⟸   XM_008768134
- Peptide Label: isoform X2
- UniProtKB: D4A1M1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008766359   ⟸   XM_008768137
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_008766360   ⟸   XM_008768138
- Peptide Label: isoform X3
- UniProtKB: D4A6I3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453145   ⟸   XM_017597656
- Peptide Label: isoform X3
- UniProtKB: D4A6I3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000019946   ⟸   ENSRNOT00000019946
Ensembl Acc Id: ENSRNOP00000052960   ⟸   ENSRNOT00000056110
Ensembl Acc Id: ENSRNOP00000111276   ⟸   ENSRNOT00000145817
Protein Domains
Ankyrin repeat

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A6I3-F1-model_v2 AlphaFold D4A6I3 1-696 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564005 AgrOrtholog
BioCyc Gene G2FUF-24128 BioCyc
Ensembl Genes ENSRNOG00000014742 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000019946.9 UniProtKB/TrEMBL
  ENSRNOT00000056110 ENTREZGENE
  ENSRNOT00000056110.5 UniProtKB/TrEMBL
  ENSRNOT00000145817 ENTREZGENE
  ENSRNOT00000145817.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
InterPro ANKRD13_C UniProtKB/TrEMBL
  Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  DUF3424 UniProtKB/TrEMBL
  Ubiquitin-int_motif UniProtKB/TrEMBL
NCBI Gene 360575 ENTREZGENE
PANTHER ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 13B UniProtKB/TrEMBL
  PTHR12447 UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
  DUF3424 UniProtKB/TrEMBL
PhenoGen Ankrd13b PhenoGen
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  UIM UniProtKB/TrEMBL
RatGTEx ENSRNOG00000014742 RatGTEx
SMART ANK UniProtKB/TrEMBL
Superfamily-SCOP ANK UniProtKB/TrEMBL
UniProt A0ABK0LK56_RAT UniProtKB/TrEMBL
  D4A1M1 ENTREZGENE, UniProtKB/TrEMBL
  D4A6I3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-05-05 Ankrd13b  ankyrin repeat domain 13B  RGD1564005  similar to novel protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1564005  similar to novel protein   RGD1564005_predicted  similar to novel protein (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1564005_predicted  similar to novel protein (predicted)  LOC360575  similar to novel protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC360575  similar to novel protein      Symbol and Name status set to provisional 70820 PROVISIONAL