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Gene: Vcf1 (VCP nuclear cofactor family member 1) Rattus norvegicus

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Symbol:

Vcf1

Name:

VCP nuclear cofactor family member 1

RGD ID:

1563409

Description:

Orthologous to human VCF1 (VCP nuclear cofactor family member 1); INTERACTS WITH bisphenol A; cadmium dichloride; endosulfan.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Fam104a; family with sequence similarity 104, member A; hypothetical protein LOC619573; LOC619573; uncharacterized protein LOC619573

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	99,206,549 - 99,227,471 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	99,206,549 - 99,227,626 (-)	Ensembl				GRCr8
mRatBN7.2	10	98,707,404 - 98,728,486 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	98,707,410 - 98,728,728 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	103,759,394 - 103,780,179 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	103,222,439 - 103,243,226 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	98,627,444 - 98,648,370 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	102,179,478 - 102,200,488 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	102,179,478 - 102,200,596 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	101,859,026 - 101,879,783 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	103,291,220 - 103,312,198 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	97,314,417 - 97,335,336 (-)	NCBI		Celera
Cytogenetic Map	10	q32.1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

acrolein (ISO)

alpha-pinene (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

cadmium dichloride (EXP)

chlorpyrifos (ISO)

cisplatin (ISO)

cyclosporin A (ISO)

doxorubicin (ISO)

endosulfan (EXP)

epoxiconazole (ISO)

fenthion (ISO)

flutamide (EXP)

folic acid (ISO)

methidathion (ISO)

ozone (ISO)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

tetrachloromethane (ISO)

titanium dioxide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
3.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data

Vcf1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	99,206,549 - 99,227,471 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	99,206,549 - 99,227,626 (-)	Ensembl				GRCr8
mRatBN7.2	10	98,707,404 - 98,728,486 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	98,707,410 - 98,728,728 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	103,759,394 - 103,780,179 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	103,222,439 - 103,243,226 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	98,627,444 - 98,648,370 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	102,179,478 - 102,200,488 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	102,179,478 - 102,200,596 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	101,859,026 - 101,879,783 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	103,291,220 - 103,312,198 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	97,314,417 - 97,335,336 (-)	NCBI		Celera
Cytogenetic Map	10	q32.1	NCBI

VCF1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	73,207,353 - 73,232,394 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	73,207,353 - 73,236,753 (-)	Ensembl			hg38	GRCh38
GRCh37	17	71,203,492 - 71,228,533 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	68,715,087 - 68,740,128 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	17	67,786,638 - 67,811,677 (-)	NCBI		Celera
Cytogenetic Map	17	q25.1	NCBI
HuRef	17	66,612,519 - 66,637,546 (-)	NCBI		HuRef
CHM1_1	17	71,267,552 - 71,292,613 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	74,097,081 - 74,122,120 (-)	NCBI		T2T-CHM13v2.0

Vcf1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	113,552,145 - 113,574,988 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	113,552,145 - 113,574,981 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	11	113,661,319 - 113,684,189 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	113,661,319 - 113,684,155 (-)	Ensembl			mm10	GRCm38
MGSCv37	11	113,522,633 - 113,545,465 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	11	113,477,410 - 113,500,122 (-)	NCBI		MGSCv36	mm8
Celera	11	125,425,403 - 125,448,233 (-)	NCBI		Celera
Cytogenetic Map	11	E2	NCBI
cM Map	11	79.12	NCBI

Vcf1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955553	232,369 - 251,265 (-)	Ensembl
ChiLan1.0	NW_004955553	230,193 - 251,322 (-)	NCBI	ChiLan1.0	ChiLan1.0

VCF1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	89,224,750 - 89,250,385 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	94,049,621 - 94,075,317 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	67,135,340 - 67,160,999 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	72,590,802 - 72,615,989 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	72,590,802 - 72,615,989 (-)	Ensembl			panPan2	panpan1.1

VCF1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	6,948,612 - 6,966,741 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	7,570,207 - 7,588,318 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	7,621,129 - 7,639,616 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	7,621,466 - 7,639,602 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	7,661,551 - 7,680,032 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	7,764,441 - 7,782,934 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	7,825,215 - 7,843,943 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Vcf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	7,505,139 - 7,524,256 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936655	1,002,678 - 1,019,763 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936655	1,002,956 - 1,021,491 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

VCF1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	7,727,796 - 7,749,240 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	12	7,727,736 - 7,747,084 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	8,008,199 - 8,027,525 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

VCF1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	48,404,267 - 48,427,455 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	48,404,352 - 48,425,279 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666077	19,225,532 - 19,248,764 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Vcf1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624801	3,295,258 - 3,312,124 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Vcf1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	75,622,845 - 75,644,373 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Vcf1
103 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	255
Count of miRNA genes:	186
Interacting mature miRNAs:	212
Transcripts:	ENSRNOT00000004001
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354641	Bvd2	Brain ventricular dilatation QTL 2	6.36	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	10	93723381	107556066	Rat
8657410	Bp374	Blood pressure QTL 374			heart left ventricle size trait (VT:0002753)	heart left ventricle end-diastolic diameter (CMO:0000982)	10	67476608	107713808	Rat
61449	Ciaa2	CIA Autoantibody QTL 2	7.1		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	10	63719161	107713808	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42546145	107713808	Rat
1549831	Bss6	Bone structure and strength QTL 6	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	10	58073360	103073360	Rat
12903252	Cm113	Cardiac mass QTL 113		0.047	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	66817119	107713808	Rat
70164	Bw21	Body weight QTL 21	4.36	0.00005	body mass (VT:0001259)	body weight (CMO:0000012)	10	54296336	99451733	Rat
2298548	Neuinf7	Neuroinflammation QTL 7	3.4		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	10	64939013	107713808	Rat
1302404	Cia27	Collagen induced arthritis QTL 27	2.6	0.0045	joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	10	76951790	107713808	Rat
1300107	Rf18	Renal function QTL 18	3.41		urine output (VT:0003620)	timed urine volume (CMO:0000260)	10	79272424	102982300	Rat
70168	Eae12	Experimental allergic encephalomyelitis QTL 12		0.0009	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	10	73599825	107713808	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	0.0005	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	10	54296227	107713808	Rat
12903269	Am15	Aortic mass QTL 15		0.042	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	66817119	107713808	Rat
12903266	Cm114	Cardiac mass QTL 114		0.02	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	10	66817119	107713808	Rat
1578672	Bmd16	Bone mineral density QTL 16	6.2		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	10	97202388	107556066	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
2313103	Bss80	Bone structure and strength QTL 80	2	0.0001	tibia strength trait (VT:1000284)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	10	62556066	107556066	Rat
12880372	Am12	Aortic mass QTL 12		0.003	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	66817119	107713808	Rat
70193	Mcs7	Mammary carcinoma susceptibility QTL 7	2.38		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72724423	107713808	Rat
2313105	Bss79	Bone structure and strength QTL 79	1.8	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	62556066	107556066	Rat
12880375	Kidm66	Kidney mass QTL 66		0.009	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	66817119	107713808	Rat
61363	Oia3	Oil induced arthritis QTL 3		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	87807758	107713808	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14991535	107556066	Rat
12880370	Cm105	Cardiac mass QTL 105		0.008	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	10	66817119	107713808	Rat
12880371	Cm106	Cardiac mass QTL 106		0.007	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	66817119	107713808	Rat
1300137	Bp186	Blood pressure QTL 186	3.57		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	10	91127270	107556066	Rat
11565453	Kidm58	Kidney mass QTL 58		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	66817119	107713808	Rat
1578663	Bss18	Bone structure and strength QTL 18	3.6		femur width (VT:1000666)	femoral neck width (CMO:0001695)	10	97202388	107556066	Rat
7387312	Bw125	Body weight QTL 125	3	0.0047	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight (CMO:0000356)	10	65390777	107713808	Rat
6893357	Bw102	Body weight QTL 102	0.5	0.36	body mass (VT:0001259)	body weight (CMO:0000012)	10	81012077	101828297	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	52269185	107713808	Rat
61396	Bp9	Blood pressure QTL 9	4.8	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68920187	107713808	Rat
1358915	Stresp7	Stress response QTL 7	3.52		blood norepinephrine amount (VT:0005663)	plasma norepinephrine level (CMO:0001010)	10	65307813	107713808	Rat
634320	Niddm49	Non-insulin dependent diabetes mellitus QTL 49	4.41		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	10	89039175	107713808	Rat
70363	Bp71	Blood pressure QTL 71		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	61843496	106843496	Rat
6893366	Bw106	Body weight QTL 106	0.3	0.47	body mass (VT:0001259)	body weight (CMO:0000012)	10	70698731	107713808	Rat
1576313	Pia25	Pristane induced arthritis QTL 25			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	96620293	107713808	Rat
1558643	Cm44	Cardiac mass QTL 44	4.8	0.0000368	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	61843496	100198886	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
1576307	Cia28	Collagen induced arthritis QTL 28			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	96620293	107713808	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	40535708	107713808	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14991535	107713808	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
1581559	Eae18	Experimental allergic encephalomyelitis QTL 18		0.00002	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	10	66108888	107555881	Rat
6893336	Cm75	Cardiac mass QTL 75	0.1	0.87	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	61843496	100198886	Rat
1600367	Mcs15	Mammary carcinoma susceptibility QTL 15	4.5		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72724423	107713808	Rat
631537	Oia4	Oil induced arthritis QTL 4			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	76128947	107713808	Rat
634354	Rends3	Renal damage susceptibility QTL 3		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	10	61997479	106997479	Rat
61436	Cia5	Collagen induced arthritis QTL 5	4.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	91727883	107713808	Rat
2301405	Cm69	Cardiac mass QTL 69		0.031	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	10	66817119	107713808	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	27023535	99451848	Rat

Markers in Region

RH127333

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	98,707,436 - 98,707,654 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	102,179,511 - 102,179,728	NCBI	Rnor6.0
Rnor_5.0	10	101,859,059 - 101,859,276	UniSTS	Rnor5.0
RGSC_v3.4	10	103,291,253 - 103,291,470	UniSTS	RGSC3.4
Celera	10	97,314,450 - 97,314,667	UniSTS
Cytogenetic Map	10	q32	UniSTS
Cytogenetic Map	10	q32.1	UniSTS

RH130214

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	98,709,100 - 98,709,281 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	102,181,175 - 102,181,355	NCBI	Rnor6.0
Rnor_5.0	10	101,860,723 - 101,860,903	UniSTS	Rnor5.0
RGSC_v3.4	10	103,292,917 - 103,293,097	UniSTS	RGSC3.4
Celera	10	97,316,114 - 97,316,294	UniSTS
RH 3.4 Map	10	1125.4	UniSTS
Cytogenetic Map	10	q32	UniSTS
Cytogenetic Map	10	q32.1	UniSTS

RH133716

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	98,707,253 - 98,708,433 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	102,179,328 - 102,180,507	NCBI	Rnor6.0
Rnor_5.0	10	101,858,876 - 101,860,055	UniSTS	Rnor5.0
RGSC_v3.4	10	103,291,070 - 103,292,249	UniSTS	RGSC3.4
Celera	10	97,314,267 - 97,315,446	UniSTS
RH 3.4 Map	10	1126.6	UniSTS
Cytogenetic Map	10	q32	UniSTS
Cytogenetic Map	10	q32.1	UniSTS

RH142070

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	98,719,710 - 98,719,910 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	102,191,785 - 102,191,984	NCBI	Rnor6.0
Rnor_5.0	10	101,871,161 - 101,871,360	UniSTS	Rnor5.0
RGSC_v3.4	10	103,303,583 - 103,303,782	UniSTS	RGSC3.4
Celera	10	97,326,721 - 97,326,920	UniSTS
Cytogenetic Map	10	q32	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001034958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247695	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247697	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086764	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086765	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086766	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086767	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086768	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086770	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086771	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269793	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269794	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC096468	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC087161	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC105876	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000004001 ⟹ ENSRNOP00000004001

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	99,206,549 - 99,227,626 (-)	Ensembl
mRatBN7.2 Ensembl	10	98,707,410 - 98,728,728 (-)	Ensembl
Rnor_6.0 Ensembl	10	102,179,478 - 102,200,400 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000081519 ⟹ ENSRNOP00000075371

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	99,207,548 - 99,227,626 (-)	Ensembl
mRatBN7.2 Ensembl	10	98,709,026 - 98,728,728 (-)	Ensembl
Rnor_6.0 Ensembl	10	102,181,279 - 102,200,596 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111544 ⟹ ENSRNOP00000094438

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	98,709,026 - 98,728,179 (-)	Ensembl

RefSeq Acc Id:

NM_001034958 ⟹ NP_001030130

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	99,206,549 - 99,227,471 (-)	NCBI
mRatBN7.2	10	98,707,404 - 98,728,326 (-)	NCBI
Rnor_6.0	10	102,179,478 - 102,200,400 (-)	NCBI
Rnor_5.0	10	101,859,026 - 101,879,783 (-)	NCBI
RGSC_v3.4	10	103,291,220 - 103,312,198 (-)	RGD
Celera	10	97,314,417 - 97,335,336 (-)	RGD

Sequence:

show sequence

ATGGGGAGGCGCGGAGGAGACACCGGAAGTAGCTGTGGTACGGGTGGGACTGAGGGGTACTCAC
CGCCGGCAGCCTCCACCCGCGCGGCAGTCAGAGCTCAGGCCCGTGGGGGTGGGCGTGGCGGTCG
CCGGAACACAACTCCGACTGTTCGCTGTCGGCGCGGGGCGGCGCCGCGTCGCTCGCCTTCACCA
GCTGCCATGAGCGAGCGCCTCCGCCCCAGAAAAAGGAGAAGAAATGGCAGTGATGATGACAACC
ACCCTCCTCCACAGACCAAAAGGAGCAGTAGGAACCCCATCTTCCAGGACTCCTGGGACACAGA
GTCTTCAAGCAGTGACAGCGGTGGGAGCAGCAGCAGCAGCATCAACAGCCCAGACAGGGCCAGT
GGGCCAGAGAGCAGCCTGAGCCACATCATCCCTGGATCCTGCCCCAGTACCCCCCAGCCGATGC
CCGAGCAGTCTGCACTGTGCCAAGGCCCTTACTTCCACATCAATCAGACCCTGAAGGAGGCTCA
CTTTCACAGCCTACAGCACCGAGGCCGGCCTCCGACATGATGCTCCGGCAGTTTCTTGCCTTCT
GTGAAGGGACAGCACTGTGCAGATTGGATATTTCAACTTAATGATTTGTTTTTAAAAGTTGCAC
ACACACACAAAAAACTGCCTGTTGGCTTTCAGTCTATATTTGAGTACCGGGTCAGCAGGCGCTG
TTTACTTGGGTTTTGCTGCACTATTGCGATTTCAGAGGGGCTTGGGAGCAATTTTTTATAGGAT
TCTTTTGAGAGAGGGCATCAGATCCACGTCATGGCAGTGTATGAGGAAGTCTCATCTGACTGAT
TTCCACATCTGTCACTTAGATGCTATACTGTATGTAAAAGAGCCTCTTAAAAAATGTGGGATCT
TAACTTTTTTAATTCAATAAACTAGTAAAGAATATCTAGTTTCCATGAAAAAAAAATGTAAGTT
TCTCCCTAAATGTAGGAAGCTTGGCTCAGTGTTGCACTGAAGTTAACTGCCATACTACCTCTTA
GTATGTAGATGTCTGTGGAAATGCTCTCCCTTGAAACAGAAGAGTTGCCCACTCTGAAGACCAT
GGAAGTTAAGCCCCTTTCCTAGTTGTGGTCTTTGTTTTATATTTGAATTTCCGGGGAGAATATC
ACTTCCATATCTATTTTTTTCTGGTCTGTAGCCTAGACGCTATAGAGAACATTGTGCAGTTCTC
AAAGTCAAGAAATACCTAGTAACTGTCTTACGAACTTGTGTATTAACAGCTTAACTGCTAGCTC
CTTGCAGTGCCCATGACCAAGGCAGCGGTCAGTGCAGATCAAGTGCAAGCTGCCCGACAGCTGG
AGGGAGAGAGGTTTAACTCATGCCTGCGGGTACCCGGCCCTGCTAGGGGTCGCCGCATTCTTAT
CATTGGAGCTGGAGAGATTGGTGTGGTGTAGAAACCTGAGCAAAGGCACCGCTAGGACAAACAG
TGCGGTAGGGTTTATTTAGAGCCTGGGCGTTGTTCCATGCTACTTGGTCATACTAGAGAGCCAG
GCGAGCTTGAACAATGAAGGTGCAGGTGAGCCGTCTTCCTCACTTGCAAGCTGTCTGAATAGAG
AGCCAGGATGCGCCGTTGGGTCACCTACTCTGGAGAGTGCCGGGGGGCCAACCTGCCGTTAGAA
GAAGAGGAAGTGCCTTAAGCGTCCACCCATAGCCTCCTGCCTGTCCCCTTCACTGCACCCCACT
CAGAGGCCACACAGCACAGGCAACAGCGCTGAGGAGTGGGGATGGCTCTAGAGAGGAGGATCTG
ACAGGGACACACTGGACCAGAGCAGGTTACTATGTGACACAGTTGCAGTGTGAAGGAGGCCCAT
GCCAGGAGGGGAGTGAACATGCAGTGCCTTCCATGGCCTGCTCCTCTGAGGGCCACAGCATGGA
AGGGCTGGCCCCGTGACATGGGAACTACTGTCATGAAGCCCAGAGTTCAGAAAGTAGTTTTTTT
TTTTCTTTCAGGACTGTTTTCCAGATTTTAAAAACAGATGTTTGCTGAGGACTCAGGATCTTAC
TGGGTTTGTTGGCAAGGAATGTGGGAAAGGATACTTTACTGGAATTCTAACAGTAAGGCAAACA
GTGCTATGAGAAGCGAAGCTGTCGCTGTCAAGCACACATGTACACAACACAACCCAGAAATACC
CAGGAGGGCTCCGGCAGGCCTAATGGATGGCGTCCTACTGAAACAAAACATGTATTAATAAAAC
AGTGTGTGAGGAAGCATGTTTCTTCCCATCTCCCACCCAAGTAAAGGCACAGGTGAGACCGTCT
GAAGACAAAGGGTCTTCCCACGTTCTGAACACAGTGTTGGGGCACAGTCATTCTTTCACCCCAC
AAAATGCAAGAAGCCATCTCTATCGTGTGCTGTGCGGTTTTCACAGCCTGGGGTCTGGCTCTGG
GTAGATTTCTATTTTGAGGTGTTTGCACGAGTCAATGGGTATCTTTCTATGAGCTCAAGCTAGT
GAACCCTGTCTTCTCTACTGCGCCGCCATTAAAAGCAGCCTTAGTGCATTGCTGTA

hide sequence

RefSeq Acc Id:

XM_006247695 ⟹ XP_006247757

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	99,206,549 - 99,227,471 (-)	NCBI
mRatBN7.2	10	98,707,404 - 98,728,461 (-)	NCBI
Rnor_6.0	10	102,179,478 - 102,200,488 (-)	NCBI
Rnor_5.0	10	101,859,026 - 101,879,783 (-)	NCBI

Sequence:

show sequence

TCTTCCTGCGGACTGGGGTTCTGGGTGAGCGCGGCCGGCGTCCCGCCTCTGCGCAGCCGCAAGA
AGACGGTACCACGGCGCCTGCGACATGGGGAGGCGCGGAGGAGACACCGGAAGTAGCTGTGGTA
CGGGTGGGACTGAGGGGTACTCACCGCCGGCAGCCTCCACCCGCGCGGCAGTCAGAGCTCAGGC
CCGTGGGGGTGGGCGTGGCGGTCGCCGGAACACAACTCCGACTGTTCGCTGTCGGCGCGGGGCG
GCGCCGCGTCGCTCGCCTTCACCAGCTGCCATGAGCGAGCGCCTCCGCCCCAGAAAAAGGAGAA
GAAATGGCAGTGATGATGACAACCACCCTCCTCCACAGACCAAAAGGAGCAGTAGGAACCCCAT
CTTCCAGGACTCCTGGGACACAGAGGAAGTGCCTGTAACAAAAAACAGTGAAGGAAGCAGACTG
AGAGGAAATAGCCCTCTGTGGTCTTCAAGCAGTGACAGCGGTGGGAGCAGCAGCAGCAGCATCA
ACAGCCCAGACAGGGCCAGTGGGCCAGAGAGCAGCCTGAGCCACATCATCCCTGGATCCTGCCC
CAGTACCCCCCAGCCGATGCCCGAGCAGTCTGCACTGTGCCAAGGCCCTTACTTCCACATCAAT
CAGACCCTGAAGGAGGCTCACTTTCACAGCCTACAGCACCGAGGCCGGCCTCCGACATGATGCT
CCGGCAGTTTCTTGCCTTCTGTGAAGGGACAGCACTGTGCAGATTGGATATTTCAACTTAATGA
TTTGTTTTTAAAAGTTGCACACACACACAAAAAACTGCCTGTTGGCTTTCAGTCTATATTTGAG
TACCGGGTCAGCAGGCGCTGTTTACTTGGGTTTTGCTGCACTATTGCGATTTCAGAGGGGCTTG
GGAGCAATTTTTTATAGGATTCTTTTGAGAGAGGGCATCAGATCCACGTCATGGCAGTGTATGA
GGAAGTCTCATCTGACTGATTTCCACATCTGTCACTTAGATGCTATACTGTATGTAAAAGAGCC
TCTTAAAAAATGTGGGATCTTAACTTTTTTAATTCAATAAACTAGTAAAGAATATCTAGTTTCC
ATGAAAAAAAAATGTAAGTTTCTCCCTAAATGTAGGAAGCTTGGCTCAGTGTTGCACTGAAGTT
AACTGCCATACTACCTCTTAGTATGTAGATGTCTGTGGAAATGCTCTCCCTTGAAACAGAAGAG
TTGCCCACTCTGAAGACCATGGAAGTTAAGCCCCTTTCCTAGTTGTGGTCTTTGTTTTATATTT
GAATTTCCGGGGAGAATATCACTTCCATATCTATTTTTTTCTGGTCTGTAGCCTAGACGCTATA
GAGAACATTGTGCAGTTCTCAAAGTCAAGAAATACCTAGTAACTGTCTTACGAACTTGTGTATT
AACAGCTTAACTGCTAGCTCCTTGCAGTGCCCATGACCAAGGCAGCGGTCAGTGCAGATCAAGT
GCAAGCTGCCCGACAGCTGGAGGGAGAGAGGTTTAACTCATGCCTGCGGGTACCCGGCCCTGCT
AGGGGTCGCCGCATTCTTATCATTGGAGCTGGAGAGATTGGTGTGGTGTAGAAACCTGAGCAAA
GGCACCGCTAGGACAAACAGTGCGGTAGGGTTTATTTAGAGCCTGGGCGTTGTTCCATGCTACT
TGGTCATACTAGAGAGCCAGGCGAGCTTGAACAATGAAGGTGCAGGTGAGCCGTCTTCCTCACT
TGCAAGCTGTCTGAATAGAGAGCCAGGATGCGCCGTTGGGTCACCTACTCTGGAGAGTGCCGGG
GGGCCAACCTGCCGTTAGAAGAAGAGGAAGTGCCTTAAGCGTCCACCCATAGCCTCCTGCCTGT
CCCCTTCACTGCACCCCACTCAGAGGCCACACAGCACAGGCAACAGCGCTGAGGAGTGGGGATG
GCTCTAGAGAGGAGGATCTGACAGGGACACACTGGACCAGAGCAGGTTACTATGTGACACAGTT
GCAGTGTGAAGGAGGCCCATGCCAGGAGGGGAGTGAACATGCAGTGCCTTCCATGGCCTGCTCC
TCTGAGGGCCACAGCATGGAAGGGCTGGCCCCGTGACATGGGAACTACTGTCATGAAGCCCAGA
GTTCAGAAAGTAGTTTTTTTTTTTCTTTCAGGACTGTTTTCCAGATTTTAAAAACAGATGTTTG
CTGAGGACTCAGGATCTTACTGGGTTTGTTGGCAAGGAATGTGGGAAAGGATACTTTACTGGAA
TTCTAACAGTAAGGCAAACAGTGCTATGAGAAGCGAAGCTGTCGCTGTCAAGCACACATGTACA
CAACACAACCCAGAAATACCCAGGAGGGCTCCGGCAGGCCTAATGGATGGCGTCCTACTGAAAC
AAAACATGTATTAATAAAACAGTGTGTGAGGAAGCATGTTTCTTCCCATCTCCCACCCAAGTAA
AGGCACAGGTGAGACCGTCTGAAGACAAAGGGTCTTCCCACGTTCTGAACACAGTGTTGGGGCA
CAGTCATTCTTTCACCCCACAAAATGCAAGAAGCCATCTCTATCGTGTGCTGTGCGGTTTTCAC
AGCCTGGGGTCTGGCTCTGGGTAGATTTCTATTTTGAGGTGTTTGCACGAGTCAATGGGTATCT
TTCTATGAGCTCAAGCTAGTGAACCCTGTCTTCTCTACTGCGCCGCCATTAAAAGCAGCCTTAG
TGCATTGCTGTA

hide sequence

RefSeq Acc Id:

XM_006247697 ⟹ XP_006247759

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	99,206,549 - 99,227,244 (-)	NCBI
mRatBN7.2	10	98,707,404 - 98,728,099 (-)	NCBI
Rnor_6.0	10	102,179,478 - 102,200,148 (-)	NCBI
Rnor_5.0	10	101,859,026 - 101,879,783 (-)	NCBI

Sequence:

show sequence

CCTCGGCCGAGGATGTGCGCCATGGAGCCGAGGGGCGCACGAAGCCGGGGTGGTGTGAGGCTCT
TGTCTGCGCTGCTCTGCGGTCGGAGGAGGCCGGGAGAAGGTTGCGCGGCCTCTGACAACTGGAC
CCTAAAAAGGAGAAGAAATGGCAGTGATGATGACAACCACCCTCCTCCACAGACCAAAAGGAGC
AGTAGGAACCCCATCTTCCAGGACTCCTGGGACACAGAGGAAGTGCCTGTAACAAAAAACAGTG
AAGGAAGCAGACTGAGAGGAAATAGCCCTCTGTGGTCTTCAAGCAGTGACAGCGGTGGGAGCAG
CAGCAGCAGCATCAACAGCCCAGACAGGGCCAGTGGGCCAGAGAGCAGCCTGAGCCACATCATC
CCTGGATCCTGCCCCAGTACCCCCCAGCCGATGCCCGAGCAGTCTGCACTGTGCCAAGGCCCTT
ACTTCCACATCAATCAGACCCTGAAGGAGGCTCACTTTCACAGCCTACAGCACCGAGGCCGGCC
TCCGACATGATGCTCCGGCAGTTTCTTGCCTTCTGTGAAGGGACAGCACTGTGCAGATTGGATA
TTTCAACTTAATGATTTGTTTTTAAAAGTTGCACACACACACAAAAAACTGCCTGTTGGCTTTC
AGTCTATATTTGAGTACCGGGTCAGCAGGCGCTGTTTACTTGGGTTTTGCTGCACTATTGCGAT
TTCAGAGGGGCTTGGGAGCAATTTTTTATAGGATTCTTTTGAGAGAGGGCATCAGATCCACGTC
ATGGCAGTGTATGAGGAAGTCTCATCTGACTGATTTCCACATCTGTCACTTAGATGCTATACTG
TATGTAAAAGAGCCTCTTAAAAAATGTGGGATCTTAACTTTTTTAATTCAATAAACTAGTAAAG
AATATCTAGTTTCCATGAAAAAAAAATGTAAGTTTCTCCCTAAATGTAGGAAGCTTGGCTCAGT
GTTGCACTGAAGTTAACTGCCATACTACCTCTTAGTATGTAGATGTCTGTGGAAATGCTCTCCC
TTGAAACAGAAGAGTTGCCCACTCTGAAGACCATGGAAGTTAAGCCCCTTTCCTAGTTGTGGTC
TTTGTTTTATATTTGAATTTCCGGGGAGAATATCACTTCCATATCTATTTTTTTCTGGTCTGTA
GCCTAGACGCTATAGAGAACATTGTGCAGTTCTCAAAGTCAAGAAATACCTAGTAACTGTCTTA
CGAACTTGTGTATTAACAGCTTAACTGCTAGCTCCTTGCAGTGCCCATGACCAAGGCAGCGGTC
AGTGCAGATCAAGTGCAAGCTGCCCGACAGCTGGAGGGAGAGAGGTTTAACTCATGCCTGCGGG
TACCCGGCCCTGCTAGGGGTCGCCGCATTCTTATCATTGGAGCTGGAGAGATTGGTGTGGTGTA
GAAACCTGAGCAAAGGCACCGCTAGGACAAACAGTGCGGTAGGGTTTATTTAGAGCCTGGGCGT
TGTTCCATGCTACTTGGTCATACTAGAGAGCCAGGCGAGCTTGAACAATGAAGGTGCAGGTGAG
CCGTCTTCCTCACTTGCAAGCTGTCTGAATAGAGAGCCAGGATGCGCCGTTGGGTCACCTACTC
TGGAGAGTGCCGGGGGGCCAACCTGCCGTTAGAAGAAGAGGAAGTGCCTTAAGCGTCCACCCAT
AGCCTCCTGCCTGTCCCCTTCACTGCACCCCACTCAGAGGCCACACAGCACAGGCAACAGCGCT
GAGGAGTGGGGATGGCTCTAGAGAGGAGGATCTGACAGGGACACACTGGACCAGAGCAGGTTAC
TATGTGACACAGTTGCAGTGTGAAGGAGGCCCATGCCAGGAGGGGAGTGAACATGCAGTGCCTT
CCATGGCCTGCTCCTCTGAGGGCCACAGCATGGAAGGGCTGGCCCCGTGACATGGGAACTACTG
TCATGAAGCCCAGAGTTCAGAAAGTAGTTTTTTTTTTTCTTTCAGGACTGTTTTCCAGATTTTA
AAAACAGATGTTTGCTGAGGACTCAGGATCTTACTGGGTTTGTTGGCAAGGAATGTGGGAAAGG
ATACTTTACTGGAATTCTAACAGTAAGGCAAACAGTGCTATGAGAAGCGAAGCTGTCGCTGTCA
AGCACACATGTACACAACACAACCCAGAAATACCCAGGAGGGCTCCGGCAGGCCTAATGGATGG
CGTCCTACTGAAACAAAACATGTATTAATAAAACAGTGTGTGAGGAAGCATGTTTCTTCCCATC
TCCCACCCAAGTAAAGGCACAGGTGAGACCGTCTGAAGACAAAGGGTCTTCCCACGTTCTGAAC
ACAGTGTTGGGGCACAGTCATTCTTTCACCCCACAAAATGCAAGAAGCCATCTCTATCGTGTGC
TGTGCGGTTTTCACAGCCTGGGGTCTGGCTCTGGGTAGATTTCTATTTTGAGGTGTTTGCACGA
GTCAATGGGTATCTTTCTATGAGCTCAAGCTAGTGAACCCTGTCTTCTCTACTGCGCCGCCATT
AAAAGCAGCCTTAGTGCATTGCTGTA

hide sequence

RefSeq Acc Id:

XM_039086764 ⟹ XP_038942692

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	99,206,549 - 99,227,309 (-)	NCBI
mRatBN7.2	10	98,707,404 - 98,728,144 (-)	NCBI

RefSeq Acc Id:

XM_039086765 ⟹ XP_038942693

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	99,210,513 - 99,227,471 (-)	NCBI
mRatBN7.2	10	98,709,497 - 98,728,486 (-)	NCBI

RefSeq Acc Id:

XM_039086766 ⟹ XP_038942694

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	99,210,513 - 99,227,244 (-)	NCBI
mRatBN7.2	10	98,709,497 - 98,728,144 (-)	NCBI

RefSeq Acc Id:

XM_039086767 ⟹ XP_038942695

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	99,206,549 - 99,227,471 (-)	NCBI
mRatBN7.2	10	98,707,404 - 98,728,485 (-)	NCBI

RefSeq Acc Id:

XM_039086768 ⟹ XP_038942696

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	99,206,549 - 99,227,393 (-)	NCBI
mRatBN7.2	10	98,707,404 - 98,728,170 (-)	NCBI

RefSeq Acc Id:

XM_039086770 ⟹ XP_038942698

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	99,210,513 - 99,227,244 (-)	NCBI
mRatBN7.2	10	98,709,497 - 98,728,097 (-)	NCBI

RefSeq Acc Id:

XM_039086771 ⟹ XP_038942699

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	99,206,549 - 99,227,341 (-)	NCBI
mRatBN7.2	10	98,707,404 - 98,728,099 (-)	NCBI

RefSeq Acc Id:

XM_063269793 ⟹ XP_063125863

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	99,220,281 - 99,227,471 (-)	NCBI

RefSeq Acc Id:

XM_063269794 ⟹ XP_063125864

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	99,220,289 - 99,227,244 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001030130	(Get FASTA)	NCBI Sequence Viewer
	XP_006247757	(Get FASTA)	NCBI Sequence Viewer
	XP_006247759	(Get FASTA)	NCBI Sequence Viewer
	XP_038942692	(Get FASTA)	NCBI Sequence Viewer
	XP_038942693	(Get FASTA)	NCBI Sequence Viewer
	XP_038942694	(Get FASTA)	NCBI Sequence Viewer
	XP_038942695	(Get FASTA)	NCBI Sequence Viewer
	XP_038942696	(Get FASTA)	NCBI Sequence Viewer
	XP_038942698	(Get FASTA)	NCBI Sequence Viewer
	XP_038942699	(Get FASTA)	NCBI Sequence Viewer
	XP_063125863	(Get FASTA)	NCBI Sequence Viewer
	XP_063125864	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI05877	(Get FASTA)	NCBI Sequence Viewer
	EDM06519	(Get FASTA)	NCBI Sequence Viewer
	EDM06520	(Get FASTA)	NCBI Sequence Viewer
	EDM06521	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000004001
	ENSRNOP00000004001.4
	ENSRNOP00000075371
	ENSRNOP00000075371.1

RefSeq Acc Id:	NP_001030130 ⟸ NM_001034958
- UniProtKB:	G3V6D5 (UniProtKB/TrEMBL), A6HKG5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGRRGGDTGSSCGTGGTEGYSPPAASTRAAVRAQARGGGRGGRRNTTPTVRCRRGAAPRRSPSP AAMSERLRPRKRRRNGSDDDNHPPPQTKRSSRNPIFQDSWDTESSSSDSGGSSSSSINSPDRAS GPESSLSHIIPGSCPSTPQPMPEQSALCQGPYFHINQTLKEAHFHSLQHRGRPPT hide sequence

RefSeq Acc Id:	XP_006247757 ⟸ XM_006247695
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2KAE7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGRRGGDTGSSCGTGGTEGYSPPAASTRAAVRAQARGGGRGGRRNTTPTVRCRRGAAPRRSPSP AAMSERLRPRKRRRNGSDDDNHPPPQTKRSSRNPIFQDSWDTEEVPVTKNSEGSRLRGNSPLWS SSSDSGGSSSSSINSPDRASGPESSLSHIIPGSCPSTPQPMPEQSALCQGPYFHINQTLKEAHF HSLQHRGRPPT hide sequence

RefSeq Acc Id:	XP_006247759 ⟸ XM_006247697
- Peptide Label:	isoform X7
- Sequence:	show sequence MCAMEPRGARSRGGVRLLSALLCGRRRPGEGCAASDNWTLKRRRNGSDDDNHPPPQTKRSSRNP IFQDSWDTEEVPVTKNSEGSRLRGNSPLWSSSSDSGGSSSSSINSPDRASGPESSLSHIIPGSC PSTPQPMPEQSALCQGPYFHINQTLKEAHFHSLQHRGRPPT hide sequence

Ensembl Acc Id:

ENSRNOP00000004001 ⟸ ENSRNOT00000004001

Ensembl Acc Id:

ENSRNOP00000075371 ⟸ ENSRNOT00000081519

RefSeq Acc Id:	XP_038942695 ⟸ XM_039086767
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038942696 ⟸ XM_039086768
- Peptide Label:	isoform X6
- UniProtKB:	A6HKG6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038942692 ⟸ XM_039086764
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038942699 ⟸ XM_039086771
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_038942693 ⟸ XM_039086765
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038942694 ⟸ XM_039086766
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038942698 ⟸ XM_039086770
- Peptide Label:	isoform X8

Ensembl Acc Id:

ENSRNOP00000094438 ⟸ ENSRNOT00000111544

RefSeq Acc Id:	XP_063125863 ⟸ XM_063269793
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_063125864 ⟸ XM_063269794
- Peptide Label:	isoform X11

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2KAE7-F1-model_v2	AlphaFold	A0A0G2KAE7	1-203	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697869

Promoter ID:

EPDNEW_R8394

Type:

initiation region

Name:

Fam104a_1

Description:

family with sequence similarity 104, member A

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	102,200,342 - 102,200,402	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1563409	AgrOrtholog
BioCyc Gene	G2FUF-22759	BioCyc
Ensembl Genes	ENSRNOG00000002851	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000004001	ENTREZGENE
	ENSRNOT00000004001.8	UniProtKB/TrEMBL
	ENSRNOT00000081519	ENTREZGENE
	ENSRNOT00000081519.3	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7129874	IMAGE-MGC_LOAD
	IMAGE:7135056	IMAGE-MGC_LOAD
InterPro	FAM104	UniProtKB/TrEMBL
KEGG Report	rno:619573	UniProtKB/TrEMBL
MGC_CLONE	MGC:125039	IMAGE-MGC_LOAD
	MGC:95313	IMAGE-MGC_LOAD
NCBI Gene	619573	ENTREZGENE
PANTHER	PROTEIN FAM104A	UniProtKB/TrEMBL
	PTHR34763	UniProtKB/TrEMBL
Pfam	FAM104	UniProtKB/TrEMBL
PhenoGen	Vcf1	PhenoGen
RatGTEx	ENSRNOG00000002851	RatGTEx
UniProt	A0A0G2KAE7	ENTREZGENE, UniProtKB/TrEMBL
	A6HKG5	ENTREZGENE, UniProtKB/TrEMBL
	A6HKG6	ENTREZGENE, UniProtKB/TrEMBL
	G3V6D5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-08-25	Vcf1	VCP nuclear cofactor family member 1	Fam104a	family with sequence similarity 104, member A	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-05	Fam104a	family with sequence similarity 104, member A	LOC619573	hypothetical protein LOC619573	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	LOC619573	hypothetical protein LOC619573			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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