Zfp853 (zinc finger protein 853) - Rat Genome Database

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Gene: Zfp853 (zinc finger protein 853) Rattus norvegicus
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Symbol: Zfp853
Name: zinc finger protein 853
RGD ID: 1563095
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Orthologous to human ZNF853 (zinc finger protein 853); INTERACTS WITH 6-propyl-2-thiouracil; atrazine; bisphenol A.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC102555274; LOC288485; RGD1563095; similar to hypothetical protein DKFZp434J1015.1 - human (fragment); similar to Zinc finger protein 500; zinc finger protein 853-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81216,379,552 - 16,390,082 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1216,383,408 - 16,389,712 (+)EnsemblGRCr8
mRatBN7.21211,266,124 - 11,276,492 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1211,269,414 - 11,275,731 (+)EnsemblmRatBN7.2
Rnor_6.01213,323,102 - 13,331,353 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1213,323,547 - 13,328,510 (+)Ensemblrn6Rnor6.0
Rnor_5.01215,363,799 - 15,370,503 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41211,620,148 - 11,635,656 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1213,062,971 - 13,071,166 (+)NCBICelera
Cytogenetic Map12p11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Zfp853
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81216,379,552 - 16,390,082 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1216,383,408 - 16,389,712 (+)EnsemblGRCr8
mRatBN7.21211,266,124 - 11,276,492 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1211,269,414 - 11,275,731 (+)EnsemblmRatBN7.2
Rnor_6.01213,323,102 - 13,331,353 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1213,323,547 - 13,328,510 (+)Ensemblrn6Rnor6.0
Rnor_5.01215,363,799 - 15,370,503 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41211,620,148 - 11,635,656 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1213,062,971 - 13,071,166 (+)NCBICelera
Cytogenetic Map12p11NCBI
ZNF853
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3876,615,610 - 6,624,290 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl76,615,348 - 6,624,290 (+)Ensemblhg38GRCh38
GRCh3776,655,241 - 6,663,921 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3676,621,511 - 6,630,446 (+)NCBIBuild 36Build 36hg18NCBI36
Celera76,071,259 - 6,079,652 (-)NCBICelera
Cytogenetic Map7p22.1NCBI
HuRef76,527,588 - 6,535,978 (+)NCBIHuRef
CHM1_176,655,147 - 6,663,538 (+)NCBICHM1_1
T2T-CHM13v2.076,734,792 - 6,743,476 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v276,702,580 - 6,710,967 (+)NCBI
Zfp853
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395143,269,283 - 143,279,757 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5143,272,793 - 143,279,378 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm385143,285,999 - 143,293,982 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5143,287,038 - 143,293,623 (-)Ensemblmm10GRCm38
MGSCv375144,049,267 - 144,054,083 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365143,552,731 - 143,565,957 (-)NCBIMGSCv36mm8
MGSCv365142,412,801 - 142,417,405 (-)NCBIMGSCv36mm8
Celera5140,331,942 - 140,336,754 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map582.06NCBI
Znf853
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546013,082,557 - 13,093,355 (-)Ensembl
ChiLan1.0NW_00495546013,085,415 - 13,092,382 (-)NCBIChiLan1.0ChiLan1.0
ZNF853
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2611,048,091 - 11,057,144 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1759,372,801 - 59,381,853 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v076,820,366 - 6,829,549 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.176,809,338 - 6,816,068 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl76,809,646 - 6,867,095 (+)EnsemblpanPan2panpan1.1
ZNF853
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1611,952,447 - 11,959,500 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha613,576,913 - 13,584,437 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0611,954,197 - 11,961,721 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl611,954,471 - 11,961,721 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1611,829,846 - 11,837,368 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0611,808,885 - 11,816,411 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0612,036,239 - 12,043,773 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Znf853
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344140,146,206 - 140,153,502 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936765138,121 - 143,165 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936765137,266 - 151,644 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF853
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl34,586,809 - 4,592,440 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.134,585,474 - 4,592,434 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZNF853
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12815,826,679 - 15,835,222 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2815,826,717 - 15,835,270 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666102197,533 - 206,140 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf853
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474030,725,098 - 30,729,480 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474030,724,765 - 30,730,213 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Znf853
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1169,850,739 - 9,857,077 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Zfp853
58 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:104
Count of miRNA genes:71
Interacting mature miRNAs:74
Transcripts:ENSRNOT00000049786, ENSRNOT00000074138
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12592191825247790Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121120049452308831Rat
2306789Ean6Experimental allergic neuritis QTL 64.9nervous system integrity trait (VT:0010566)experimental autoimmune neuritis severity score (CMO:0001528)12129775522Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
1357337Gluco3Glucose level QTL 30.0004adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)12116966671Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12348941648489416Rat
1331739Hrtrt14Heart rate QTL 143.56232heart pumping trait (VT:2000009)heart rate (CMO:0000002)12138687564Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049752308831Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)121526424852308831Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12133700600Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)121174352852308831Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)121186960016966542Rat
61334Gluco17Glucose level QTL 176.3adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)12116966671Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)12138635130Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12128133365Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)121223300030490641Rat
1300174Bw15Body weight QTL 152.93body mass (VT:0001259)body weight loss (CMO:0001399)12128606299Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121618743852308831Rat
1331787Rf41Renal function QTL 412.998kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)12133700556Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121613502952308831Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121618743851213550Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)121120049452308831Rat
7204484Bp358Blood pressure QTL 3580.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)12124849755Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)61120049452308831Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12141361854Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12274769447747694Rat
2303568Bw88Body weight QTL 883body mass (VT:0001259)body weight (CMO:0000012)12128606299Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12308718048087180Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)12563330650633306Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121613502952308831Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12790162533938215Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
1331755Bp219Blood pressure QTL 2193.041arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121618743833700556Rat

Markers in Region
RH137324  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,259,879 - 11,260,097 (+)MAPPERmRatBN7.2
Rnor_6.01213,313,441 - 13,313,658NCBIRnor6.0
Rnor_5.01215,354,267 - 15,354,484UniSTSRnor5.0
RGSC_v3.41211,620,098 - 11,620,315UniSTSRGSC3.4
Celera1213,053,034 - 13,053,251UniSTS
Cytogenetic Map12p11UniSTS
UniSTS:235357  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,259,945 - 11,260,073 (+)MAPPERmRatBN7.2
Rnor_6.01213,313,507 - 13,313,634NCBIRnor6.0
Rnor_5.01215,354,333 - 15,354,460UniSTSRnor5.0
RGSC_v3.41211,620,164 - 11,620,291UniSTSRGSC3.4
Celera1213,053,100 - 13,053,227UniSTS
Cytogenetic Map12p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 161 91 90 59 82 59 6 346 182 11 140 81 90 31 16 16

Sequence


Ensembl Acc Id: ENSRNOT00000074138   ⟹   ENSRNOP00000066662
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1216,383,408 - 16,389,712 (+)Ensembl
mRatBN7.2 Ensembl1211,269,414 - 11,275,731 (+)Ensembl
Rnor_6.0 Ensembl1213,323,547 - 13,328,510 (+)Ensembl
RefSeq Acc Id: XM_039089853   ⟹   XP_038945781
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81216,379,552 - 16,390,082 (+)NCBI
mRatBN7.21211,266,124 - 11,276,492 (+)NCBI
RefSeq Acc Id: XM_039089854   ⟹   XP_038945782
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81216,382,885 - 16,390,082 (+)NCBI
mRatBN7.21211,269,286 - 11,276,492 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038945781 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945782 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000066662.4
Ensembl Acc Id: ENSRNOP00000066662   ⟸   ENSRNOT00000074138
RefSeq Acc Id: XP_038945781   ⟸   XM_039089853
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038945782   ⟸   XM_039089854
- Peptide Label: isoform X2
- UniProtKB: M0RAV1 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0RAV1-F1-model_v2 AlphaFold M0RAV1 1-674 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563095 AgrOrtholog
BioCyc Gene G2FUF-19998 BioCyc
Ensembl Genes ENSRNOG00000030579 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000074138.4 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Zinc_finger UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Zfp853 ENTREZGENE
PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  PR DOMAIN ZINC FINGER PROTEIN UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
PhenoGen Zfp853 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000030579 RatGTEx
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt M0RAV1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-06 Zfp853  zinc finger protein 853  LOC102555274  zinc finger protein 853-like  Data merged from RGD:7656830 737654 APPROVED
2013-12-18 LOC102555274  zinc finger protein 853-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-05-24 Zfp853  zinc finger protein 853  LOC684896  similar to Zinc finger protein 500  Data merged from RGD:1585502 1643240 APPROVED
2008-11-04 Zfp853  zinc finger protein 853  RGD1563095  similar to hypothetical protein DKFZp434J1015.1 - human (fragment)   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1563095  similar to hypothetical protein DKFZp434J1015.1 - human (fragment)   RGD1563095_predicted  similar to hypothetical protein DKFZp434J1015.1 - human (fragment) (predicted)  'predicted' is removed 2292626 APPROVED
2006-11-19 LOC684896  similar to Zinc finger protein 500      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-07 RGD1563095_predicted  similar to hypothetical protein DKFZp434J1015.1 - human (fragment) (predicted)  LOC288485  similar to hypothetical protein DKFZp434J1015.1 - human (fragment)  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC288485  similar to hypothetical protein DKFZp434J1015.1 - human (fragment)      Symbol and Name status set to provisional 70820 PROVISIONAL