Zfp90 (zinc finger protein 90) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Zfp90 (zinc finger protein 90) Rattus norvegicus
Analyze
Symbol: Zfp90
Name: zinc finger protein 90
RGD ID: 1563077
Description: Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in positive regulation of DNA-templated transcription. Predicted to be active in nucleus. Orthologous to human ZFP90 (ZFP90 zinc finger protein); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; cadmium dichloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC498945; MGC114532; similar to NK10; zfp-90; zinc finger protein 90 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81951,231,748 - 51,243,039 (+)NCBIGRCr8
mRatBN7.21934,321,980 - 34,333,195 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1934,321,940 - 34,333,194 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1941,137,598 - 41,148,747 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01941,790,914 - 41,802,064 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01944,090,047 - 44,101,193 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01938,597,657 - 38,608,951 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1938,598,165 - 38,608,943 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01949,465,689 - 49,476,870 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41936,271,854 - 36,282,995 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1933,748,744 - 33,759,889 (+)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA,IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Zinc-finger protein 90 negatively regulates neuron-restrictive silencer factor-mediated transcriptional repression of fetal cardiac genes. Hata L, etal., J Mol Cell Cardiol. 2011 Jun;50(6):972-81. doi: 10.1016/j.yjmcc.2011.01.017. Epub 2011 Jan 31.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:7576184   PMID:15489334  


Genomics

Comparative Map Data
Zfp90
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81951,231,748 - 51,243,039 (+)NCBIGRCr8
mRatBN7.21934,321,980 - 34,333,195 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1934,321,940 - 34,333,194 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1941,137,598 - 41,148,747 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01941,790,914 - 41,802,064 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01944,090,047 - 44,101,193 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01938,597,657 - 38,608,951 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1938,598,165 - 38,608,943 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01949,465,689 - 49,476,870 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41936,271,854 - 36,282,995 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1933,748,744 - 33,759,889 (+)NCBICelera
Cytogenetic Map19q12NCBI
ZFP90
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381668,533,479 - 68,576,506 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1668,530,090 - 68,576,072 (+)EnsemblGRCh38hg38GRCh38
GRCh371668,573,194 - 68,609,975 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361667,131,162 - 67,158,540 (+)NCBINCBI36Build 36hg18NCBI36
Celera1653,082,214 - 53,109,582 (+)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1654,446,918 - 54,474,298 (+)NCBIHuRef
CHM1_11669,981,717 - 70,009,094 (+)NCBICHM1_1
T2T-CHM13v2.01674,323,667 - 74,372,339 (+)NCBIT2T-CHM13v2.0
Zfp90
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398107,141,929 - 107,153,575 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8107,141,959 - 107,153,230 (+)EnsemblGRCm39 Ensembl
GRCm388106,415,295 - 106,426,943 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8106,415,327 - 106,426,598 (+)EnsemblGRCm38mm10GRCm38
MGSCv378108,939,239 - 108,949,789 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368109,304,510 - 109,314,963 (+)NCBIMGSCv36mm8
Celera8110,643,304 - 110,653,858 (+)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.14NCBI
Zfp90
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554848,107,385 - 8,121,567 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554848,105,201 - 8,130,899 (-)NCBIChiLan1.0ChiLan1.0
ZFP90
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21878,076,784 - 78,147,394 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11683,988,097 - 84,041,241 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01648,906,423 - 48,955,940 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11668,300,659 - 68,348,991 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1668,309,633 - 68,345,815 (+)Ensemblpanpan1.1panPan2
ZFP90
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1580,930,358 - 81,011,195 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl580,973,235 - 81,012,327 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha580,978,373 - 81,079,921 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0581,422,795 - 81,524,318 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl581,422,799 - 81,524,225 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1581,249,702 - 81,351,184 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0580,932,787 - 81,034,270 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0581,573,654 - 81,675,211 (-)NCBIUU_Cfam_GSD_1.0
Zfp90
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934940,711,361 - 40,757,427 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647518,832,191 - 18,845,725 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647518,831,701 - 18,849,073 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZFP90
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl618,312,935 - 18,335,458 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1618,312,931 - 18,335,458 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2616,861,602 - 16,878,747 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZFP90
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1558,839,959 - 58,869,761 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604721,579,505 - 21,614,529 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zfp90
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474617,756,506 - 17,772,293 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zfp90
42 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:97
Count of miRNA genes:80
Interacting mature miRNAs:85
Transcripts:ENSRNOT00000027209
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19136824771Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19136824771Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
724565Tcas5Tongue tumor susceptibility QTL 510.04tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)19997775339654489Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191082797043544039Rat
1558656Prcs1Prostate cancer susceptibility QTL 15prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)191511459834521833Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)191560502346559041Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
1549835Tcas7Tongue tumor susceptibility QTL 70.001tongue integrity trait (VT:0010553)squamous cell carcinoma of the head and neck tumor number (CMO:0001876)192481797839654489Rat
1354600Salc2Saline consumption QTL 29.910.001drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)192753020737947399Rat
1354607Gmadr1Adrenal mass QTL 15.83adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)192753020737947399Rat
1354633Bw28Body weight QTL 286.04body mass (VT:0001259)body weight (CMO:0000012)192753020737947399Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum insulin level (CMO:0000358)193383821455283146Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat

Markers in Region
RH144285  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21934,324,738 - 34,324,875 (+)MAPPERmRatBN7.2
Rnor_6.01938,600,502 - 38,600,638NCBIRnor6.0
Rnor_5.01949,468,421 - 49,468,557UniSTSRnor5.0
RGSC_v3.41936,274,546 - 36,274,682UniSTSRGSC3.4
Celera1933,751,436 - 33,751,572UniSTS
RH 3.4 Map19281.5UniSTS
Cytogenetic Map19q12UniSTS
RH133767  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21934,331,419 - 34,331,614 (+)MAPPERmRatBN7.2
Rnor_6.01938,607,176 - 38,607,370NCBIRnor6.0
Rnor_5.01949,475,095 - 49,475,289UniSTSRnor5.0
RGSC_v3.41936,281,220 - 36,281,414UniSTSRGSC3.4
Celera1933,758,114 - 33,758,308UniSTS
RH 3.4 Map19315.3UniSTS
Cytogenetic Map19q12UniSTS
RH142903  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21934,332,952 - 34,333,151 (+)MAPPERmRatBN7.2
Rnor_6.01938,608,709 - 38,608,907NCBIRnor6.0
Rnor_5.01949,476,628 - 49,476,826UniSTSRnor5.0
RGSC_v3.41936,282,753 - 36,282,951UniSTSRGSC3.4
Celera1933,759,647 - 33,759,845UniSTS
RH 3.4 Map19280.4UniSTS
Cytogenetic Map19q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 57 18 28
Low 3 43 57 41 19 41 7 9 17 17 13 11 7
Below cutoff 1 2 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000027209   ⟹   ENSRNOP00000027209
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1934,322,027 - 34,333,194 (+)Ensembl
Rnor_6.0 Ensembl1938,598,165 - 38,608,779 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000087655   ⟹   ENSRNOP00000075443
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1934,321,940 - 34,333,194 (+)Ensembl
Rnor_6.0 Ensembl1938,601,786 - 38,608,943 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000112089   ⟹   ENSRNOP00000078744
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1934,321,940 - 34,331,377 (+)Ensembl
RefSeq Acc Id: NM_001025765   ⟹   NP_001020936
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81951,231,894 - 51,243,039 (+)NCBI
mRatBN7.21934,322,047 - 34,333,195 (+)NCBI
Rnor_6.01938,597,810 - 38,608,951 (+)NCBI
Rnor_5.01949,465,689 - 49,476,870 (+)NCBI
RGSC_v3.41936,271,854 - 36,282,995 (+)RGD
Celera1933,748,744 - 33,759,889 (+)RGD
Sequence:
RefSeq Acc Id: XM_006255566   ⟹   XP_006255628
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81951,231,799 - 51,243,039 (+)NCBI
mRatBN7.21934,321,995 - 34,333,195 (+)NCBI
Rnor_6.01938,597,674 - 38,608,951 (+)NCBI
Rnor_5.01949,465,689 - 49,476,870 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063278195   ⟹   XP_063134265
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81951,231,796 - 51,243,039 (+)NCBI
RefSeq Acc Id: XM_063278196   ⟹   XP_063134266
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81951,231,748 - 51,241,209 (+)NCBI
RefSeq Acc Id: XM_063278197   ⟹   XP_063134267
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81951,231,761 - 51,241,209 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001020936   ⟸   NM_001025765
- UniProtKB: Q4V8A8 (UniProtKB/Swiss-Prot),   A6IYW9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006255628   ⟸   XM_006255566
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000075443   ⟸   ENSRNOT00000087655
RefSeq Acc Id: ENSRNOP00000027209   ⟸   ENSRNOT00000027209
RefSeq Acc Id: ENSRNOP00000078744   ⟸   ENSRNOT00000112089
RefSeq Acc Id: XP_063134266   ⟸   XM_063278196
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063134267   ⟸   XM_063278197
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063134265   ⟸   XM_063278195
- Peptide Label: isoform X1
Protein Domains
C2H2-type   KRAB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4V8A8-F1-model_v2 AlphaFold Q4V8A8 1-633 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563077 AgrOrtholog
BioCyc Gene G2FUF-5781 BioCyc
Ensembl Genes ENSRNOG00000020087 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00055018463 UniProtKB/Swiss-Prot
  ENSRNOG00060012800 UniProtKB/Swiss-Prot
  ENSRNOG00065012639 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000027209 ENTREZGENE
  ENSRNOT00000027209.5 UniProtKB/TrEMBL
  ENSRNOT00000087655.2 UniProtKB/TrEMBL
  ENSRNOT00000112089.1 UniProtKB/TrEMBL
  ENSRNOT00055031391 UniProtKB/Swiss-Prot
  ENSRNOT00060021785 UniProtKB/Swiss-Prot
  ENSRNOT00065020601 UniProtKB/Swiss-Prot
Gene3D-CATH 6.10.140.140 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7457672 IMAGE-MGC_LOAD
InterPro KRAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:498945 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:114532 IMAGE-MGC_LOAD
NCBI Gene 498945 ENTREZGENE
PANTHER GENE 10130-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KRAB DOMAIN C2H2 ZINC FINGER UniProtKB/TrEMBL
  KRAB DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  ZNF44 PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam KRAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Zfp90 PhenoGen
PROSITE KRAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000020087 RatGTEx
  ENSRNOG00055018463 RatGTEx
  ENSRNOG00060012800 RatGTEx
  ENSRNOG00065012639 RatGTEx
SMART KRAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2KAL7_RAT UniProtKB/TrEMBL
  A0A8I5ZLH2_RAT UniProtKB/TrEMBL
  A0A8L2QG50_RAT UniProtKB/TrEMBL
  A6IYW9 ENTREZGENE, UniProtKB/TrEMBL
  Q4V8A8 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-05 Zfp90  zinc finger protein 90  LOC498945  similar to NK10  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC498945  similar to NK10      Symbol and Name status set to provisional 70820 PROVISIONAL