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Gene: C17h6orf52 (similar to human chromosome 6 open reading frame 52) Rattus norvegicus

Analyze

Symbol:

C17h6orf52

Name:

similar to human chromosome 6 open reading frame 52

RGD ID:

1562963

Description:

Orthologous to human C6orf52 (chromosome 6 open reading frame 52); INTERACTS WITH 6-propyl-2-thiouracil; bisphenol A; endosulfan.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hypothetical protein LOC498729; LOC498729; putative uncharacterized protein C6orf52 homolog; RGD1562963; similar to chromosome 6 open reading frame 52; uncharacterized protein LOC498729

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Allele / Splice:

C17h6orf52^em2Mcwi

Genetic Models:

LH-Chr 17^LN-C17h6orf52^em2Mcwi

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	23,959,124 - 23,981,978 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	17	23,968,478 - 23,981,976 (+)	Ensembl				GRCr8
mRatBN7.2	17	23,753,359 - 23,776,251 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	23,762,746 - 23,776,245 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	17	23,632,792 - 23,646,285 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	25,236,261 - 25,249,755 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	23,573,761 - 23,587,254 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	21,600,326 - 21,615,888 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	21,600,432 - 21,613,930 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	17	23,581,681 - 23,595,498 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	17	29,733,271 - 29,746,771 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	17	23,432,376 - 23,445,886 (+)	NCBI		Celera
Cytogenetic Map	17	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

6-propyl-2-thiouracil (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

bisphenol A (EXP)

cadmium dichloride (ISO)

endosulfan (EXP)

formaldehyde (ISO)

indometacin (ISO)

paracetamol (EXP)

quercetin (ISO)

resveratrol (ISO)

sodium arsenate (ISO)

temozolomide (ISO)

tetrachloromethane (EXP)

trichloroethene (EXP)

valproic acid (ISO)

vorinostat (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

C17h6orf52
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	23,959,124 - 23,981,978 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	17	23,968,478 - 23,981,976 (+)	Ensembl				GRCr8
mRatBN7.2	17	23,753,359 - 23,776,251 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	23,762,746 - 23,776,245 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	17	23,632,792 - 23,646,285 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	25,236,261 - 25,249,755 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	23,573,761 - 23,587,254 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	21,600,326 - 21,615,888 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	21,600,432 - 21,613,930 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	17	23,581,681 - 23,595,498 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	17	29,733,271 - 29,746,771 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	17	23,432,376 - 23,445,886 (+)	NCBI		Celera
Cytogenetic Map	17	p12	NCBI

C6orf52
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	10,671,422 - 10,694,891 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	10,671,418 - 10,694,797 (-)	Ensembl			hg38	GRCh38
GRCh37	6	10,671,655 - 10,695,030 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	10,779,637 - 10,795,769 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	6	11,900,143 - 11,923,522 (-)	NCBI		Celera
Cytogenetic Map	6	p24.2	NCBI
HuRef	6	10,547,315 - 10,570,646 (-)	NCBI		HuRef
CHM1_1	6	10,673,764 - 10,697,143 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	10,539,141 - 10,562,610 (-)	NCBI		T2T-CHM13v2.0

C5H6orf52
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	25,321,055 - 25,337,142 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	21,310,715 - 21,326,808 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	10,512,465 - 10,535,628 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	10,792,736 - 10,815,260 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	10,792,736 - 10,815,257 (-)	Ensembl			panPan2	panpan1.1

C35H6orf52
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	35	10,422,161 - 10,436,031 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	35	10,422,255 - 10,432,336 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	35	10,370,981 - 10,385,023 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	35	10,526,377 - 10,540,527 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	35	10,526,554 - 10,540,504 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	35	10,355,805 - 10,369,564 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	35	10,402,708 - 10,416,783 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	35	11,723,241 - 11,737,288 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

CUNH6orf52
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	13,996,386 - 14,011,314 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936534	2,269,270 - 2,280,288 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

C7H6orf52
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	7,430,542 - 7,437,789 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	7	7,430,420 - 7,438,002 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	7,742,836 - 7,750,084 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

C17H6orf52
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	61,455,582 - 61,520,436 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	61,456,515 - 61,472,516 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666044	10,703,155 - 10,726,878 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CUNH6orf52
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624756	15,212,087 - 15,223,534 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624756	15,212,870 - 15,229,681 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

C14H6orf52
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	14	59,981,676 - 59,990,753 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in C17h6orf52
340 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	184
Count of miRNA genes:	146
Interacting mature miRNAs:	153
Transcripts:	ENSRNOT00000060340
Prediction methods:	Microtar, Miranda, Pita, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354581	Bp247	Blood pressure QTL 247	4.5		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	17	1	43999106	Rat
2300002	Iddm36	Insulin dependent diabetes mellitus QTL 36	1.98		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	17	9266755	40968173	Rat
2293664	Bmd28	Bone mineral density QTL 28	5.1	0.0001	femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	17	4360057	27233623	Rat
8552966	Pigfal18	Plasma insulin-like growth factor 1 level QTL 18	8.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	17	12860942	57860942	Rat
1300123	Bp194	Blood pressure QTL 194	2.82		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	2120843	42054133	Rat
2302377	Scl61	Serum cholesterol level QTL 61	4.36		blood HDL cholesterol amount (VT:0000184)	serum high density lipoprotein cholesterol level (CMO:0000361)	17	6221998	58177198	Rat
70157	Niddm32	Non-insulin dependent diabetes mellitus QTL 32	4.34		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	22660799	55604694	Rat
9589151	Insul30	Insulin level QTL 30	8.82	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	17	12860942	57860942	Rat
1354628	Stl13	Serum triglyceride level QTL 13	3.8		blood triglyceride amount (VT:0002644)	blood triglyceride level (CMO:0000118)	17	21498994	50592236	Rat
10401807	Kidm52	Kidney mass QTL 52			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	17	1	31706603	Rat
10054088	Scort28	Serum corticosterone level QTL 28	2.04	0.0102	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	17	4733534	49733534	Rat
61394	Bp8	Blood pressure QTL 8	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	23286322	64246472	Rat
9589057	Scfw6	Subcutaneous fat weight QTL 6	8.62	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	17	12860942	57860942	Rat
9590154	Scort9	Serum corticosterone level QTL 9	23.57	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	17	12860942	57860942	Rat
10450503	Bp386	Blood pressure QTL 386		0.28	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	22019705	67019705	Rat
1559055	Bp278	Blood pressure QTL 278		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	23858926	68858926	Rat
9590088	Insglur7	Insulin/glucose ratio QTL 7	20.38	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	17	12860942	57860942	Rat
1331720	Rf43	Renal function QTL 43	2.881		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	17	15537025	28637951	Rat
2317053	Aia25	Adjuvant induced arthritis QTL 25	2.69		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	17	10604694	55604694	Rat
1354613	Kidm14	Kidney mass QTL 14	6.2		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	17	1	36045694	Rat
1331765	Hrtrt15	Heart rate QTL 15	4.094		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	17	15537025	60531414	Rat
7411666	Foco31	Food consumption QTL 31	11.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	17	12860942	57860942	Rat
2303627	Vencon8	Ventilatory control QTL 8		0.001	respiration trait (VT:0001943)	tidal volume (CMO:0000222)	17	4733534	49733534	Rat
12903980	Cm120	Cardiac mass QTL 120		0.002	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	17	23858926	68858926	Rat
70184	BpQTLcluster14	Blood pressure QTL cluster 14	3.38		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	8574342	32199534	Rat
12903981	Am17	Aortic mass QTL 17		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	17	23858926	68858926	Rat
12903982	Kidm70	Kidney mass QTL 70		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	23858926	68858926	Rat
631207	Niddm41	Non-insulin dependent diabetes mellitus QTL 41			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	17	1	38037084	Rat
12903978	Cm118	Cardiac mass QTL 118		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	17	23858926	68858926	Rat
12903979	Cm119	Cardiac mass QTL 119		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	17	23858926	68858926	Rat
1354662	Rf49	Renal function QTL 49	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	17	1	43999106	Rat
2293648	Bmd31	Bone mineral density QTL 31	4.5	0.0001	femur size trait (VT:1000369)	femoral neck cortical cross-sectional area (CMO:0001702)	17	4360057	27233623	Rat
7488966	Bp370	Blood pressure QTL 370		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	23858926	68858926	Rat
1354658	Spl8	Serum phospholipid level QTL 8	3.8		blood VLDL phospholipid amount (VT:0010507)	blood very low density lipoprotein phospholipid level (CMO:0001571)	17	1	43999106	Rat

Genetic Models

This gene C17h6orf52 is modified in the following models/strains:

LH-Chr 17^LN-C17h6orf52^em2Mcwi

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	81	59	6	344	181	11	143	80	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001145021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253780	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276689	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC119496	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC098763	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000060340 ⟹ ENSRNOP00000057088

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	23,968,478 - 23,981,976 (+)	Ensembl
mRatBN7.2 Ensembl	17	23,762,746 - 23,776,245 (+)	Ensembl
Rnor_6.0 Ensembl	17	21,600,432 - 21,613,930 (+)	Ensembl

RefSeq Acc Id:

NM_001145021 ⟹ NP_001138493

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	23,968,478 - 23,981,978 (+)	NCBI
mRatBN7.2	17	23,762,746 - 23,776,247 (+)	NCBI
Rnor_6.0	17	21,600,432 - 21,613,932 (+)	NCBI
Rnor_5.0	17	23,581,681 - 23,595,498 (+)	NCBI
RGSC_v3.4	17	29,733,271 - 29,746,771 (+)	RGD
Celera	17	23,432,376 - 23,445,886 (+)	RGD

Sequence:

show sequence

AAATGGTGGAAACACAATCACCTGGAAAAGAGTGTGCGGTGCTGCCCCTGTGGGTGCTGACTGT
CACTTCTTGTCCTCTACCATCTGCCATTAGGGAGCAGCTGAGGGTCCACCACAGCCTGAGGTGC
CACCGTGACAACCATTACGAACTGCTACACAGCTTTTACTGGCTCTCCTGCTACAGCCGCGGCT
CCACGTTGTCTGGAAATGGGCTCGGTCCTCTGTGTGTGACTGAGAACCCTGAACTGCTAGCTGG
ACCTTGGGCTATTCCAGAGGAAACCACAGACCCAGCTGAAAACCAAGAGGAAGACTTTCTCAGA
GACCCAAACCTTCATCTGAATATTGAAGAATCAGACAAGGAGTTCATGGCCGTAAGGGAAGAGC
TCTACGACTCCCTCATGAACCGTCGCTGGCACTGTCTGGACACTGTTCTGTCTAATGTTCCAGA
TGAGCTCCCCCAGTGTGAAGTTTTCTGATGAAAGGCTCTGACGAGGCACCATTTGTAAGGATCT
CCCAAATGGATCAGACCATGGAGTAAGACCCTTTACCTGTTGCACCTTGCACTGAAGATGTGTT
CTGCAGAGGGGTGGACCATTGACTGTGCTGACACGACATTAAATTTGCATGTAGAAATAAGGCT
ACAGTAGAGATTCCTCTAGCAATGTGGCATGGCCACAGCCTCTCATAATGCACTTCAATAGGCT
TTGAAACAGACAATTCCAAAACTGTATGCAGAAAAGACTTCAGGTCTTCCTTGTCGGTTGAAGG
GAAAGTAGCCTAGAGACGTGTATGTAGTCATTTGAGTTTCATAGGTTGGAAAGTGTGAAAGAAA
GCGATCATTGATGTGTACTATGTAAAAGCTAACTCTTTTTCCCCTTGATTAGAAATTTCAATCT
GTTCCTATCACTTCACATTGAATATGACATTTTAATATAGAAATACAATAGGATATAAGCTGAC
TGAGGGTACACTTCAGTGGTAGACTGGGTACTTAGCCTTCTGTCCAGGCCCAGTACCAAGCAAA
TAATATTTAAAAAGAATGTATGGAGTTGGCAAGGTTCCCCAGCAGGTAAATGAACTTGCCACCC
AACCTGACAACCTGAGTTCATCCTTAGGCCCCTTAGATCCTTGGGTAGAGGGAGAGAATCAACT
CCCCAAAGTTGTACACTCCCCAGAACCAAGGCAGGAGGAAAGAAAGGCTCAATTTCCTAACGAT
ATAAGTCCTTCACACTTCAGAAATAACACTTTGTGTAAACCTTGCCTCATTCGACCCAAGGTTT
AGGTTGCAGTTTGAATGTTAAATGTCCCGGCCAGCTCATTTGCTTGAACATTTGGTCCCAGTCC
AGTTGGTGGCACTGTTTCAGAACGTTCTAGAGCCTTTAGGAAGTCAACCTTCGTCAGGAGAATG
GATCACTGAGGGTTGACTTGAGGTCGGTAGATAGGAATTGTTTCCCGCCCTATCTACGTTCTGC
TTCCTGACTGAAGAGCCAGGGTGACCAGCTGCCTCCTGATCCTGCTACCTTCCCTACCACGACA
GACTGTCTCGTCAAACAATAAGCCAGAATAAACCCTTGCTCCTTTAAAAAAAAAAAAAAAAAAA
AAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006253780 ⟹ XP_006253842

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	23,966,635 - 23,981,978 (+)	NCBI
mRatBN7.2	17	23,762,094 - 23,776,251 (+)	NCBI
Rnor_6.0	17	21,600,326 - 21,615,888 (+)	NCBI
Rnor_5.0	17	23,581,681 - 23,595,498 (+)	NCBI

Sequence:

show sequence

GAGGTTTTGTTTACTTTGTACTTTCAGTGAAAGCCACCAGTGTTGTTCAGTACAAGCTTCTTGC
CAAGGGCCAGCCTGCTGCTGAGAGCATAGGCAGTTTCATTTTAAATGGTGGAAACACAATCACC
TGGAAAAGAGTGTGCGGTGCTGCCCCTGTGGGTGCTGACTGTCACTTCTTGTCCTCTACCATCT
GCCATTAGGGAGCAGCTGAGGGTCCACCACAGCCTGAGGTGCCACCGTGACAACCATTACGAAC
TGCTACACAGCTTTTACTGGCTCTCCTGCTACAGCCGCGGCTCCACGTTGTCTGGAAATGGGCT
CGGTCCTCTGTGTGTGACTGAGAACCCTGAACTGCTAGCTGGACCTTGGGCTATTCCAGAGGAA
ACCACAGACCCAGCTGAAAACCAAGAGGAAGACTTTCTCAGAGACCCAAACCTTCATCTGAATA
TTGAAGAATCAGACAAGGAGTTCATGGCCGTAAGGGAAGAGCTCTACGACTCCCTCATGAACCG
TCGCTGGCACTGTCTGGACACTGTTCTGTCTAATGTTCCAGATGAGCTCCCCCAGTGTGAAGTA
AGTGTTCGCCATGCCCTCCAACTGCCCTATTAACTGGATCTTGCTTTGGTTTTGGAGAAGAAAA
TTCCAGGAGTGTATTAGATCCTGAATGTATAATTAATTATCCTTCCCCTCCCCAAGCCCCAGTA
CTGGGAGATGAAGCCCAAGACCTTGTATATGTTAGATAAGCACTCTACAACTGAATTGTGTCCC
AACCCTCAGAAACTGTTTGTAACTATAAACTTCTGGGACTTCAATGTGATTAGCATGGTGAAAT
ATGATATAAGTAAAGATTACTAGCACAGTCATCCCAGGAAGTGTGTGATCTGAAGTCGGTTCCA
GAGGAGTTCACCAGACTGAAGGTCGAAGCTACGAGATGGCCATTGGGAGATAAATTTTACAGAG
ATGGATATGAGCTCAAGGGTTGGCGGCCTTAGCCTCTGTGTTTCACGCACTTCTTGTAACAGTA
AACCCTCATGGAAAGAATCAGATGCATACAGGATGTAGAATTTCTCAGTGATATCTTGTCTGGC
AAACGTCAGGTAAGAACTAGATGCTCAGTCTCCACTGACCCTTGGGATCTGTTTAAGGAAGCTT
AAGAGGAGAAGACAACGGAGAGCCACCTCAGCTGAACAAAAAGATTCCCAAGAACGGACATAGT
CCACCTCATCCCCACAGCCTGATGGTTTTTCTAAGACCAAGGAACTGGAACTTTATACAAACTA
GTTGTGAAGCTTCCATGTATTTATAAAGTGGGAAGTGAAGTAGTTAGAGAGATGGCTCAGTGGT
TAAGAGCAATGGCTACTCTTCCAGAGGCCCTGGGTTCAATTCCCAGCACCCACATGACAACTCA
CAACCATGTATAATGTAATTCCAGTTCCGGGGGATCTGAAGCCCTTCTTTGGCTTCTATGAGAA
CTAGGCATACGTGTGGTGCTATATGCCAGAAAACATATATAGACACAAAACAATAAGGTATAAA
AACTTAAATACGTGTTATTGGGGTTGTGTTTTAGTGTATTGCTTTGCCTCAAATACACACTTAA
GAGAGACCCCTGGCTGCATTCATGAACTTGTAGGCTAAAAGCATATAAAAAGTATATGTTTAGG
AGAGTTTTGTTCAGACCATAAGCAACAAGATTGGATATTTTCTCCTTTTCAGAGATACTTAGCT
CATAAGCCTCATACCGCACAGGCCTTTGAAAGACTCACAGAAAGTCTGATGGGCTCGAGCTGCT
GAGAACCCAGGGGTGTGACCCATTCCCACCGTGTCATCTTTTGTCTTTTGAGCCCAGACCTTTC
TTCCCAGAAGGATTAGCTCACATTTTCTGACCCCTGCCATAAGACGCCCGTAGCATTGTTGTGT
CGTAGTATGGCTAAAATGTCCCCAGACATAGCCAGATGTCCCCCCAGGGGTGAAACCGTGCCCT
CACTTAACACAACGAGACGAGAACAATGGTCATCAGGCTCCGGGAAGCTGTGCTTAGACCAAAG
CGGAGAGCTTGCTTTAGGATTTGGCAGTAAAATGAAAAGTCACAGACACAAATCAGCAGGGCAA
AAATAAATTTAAATTTAGCTAAGTAATTCTTTGTTAGAGAAATGACCGCAAATCCGTATGGTTT
GCATATTTGTTTTAAAGGAACAACCAATTTAACCTCGTTTACATCAATTTCATACATAAATAAA
AAAGAGGGCCGGGATGTAGCTCAGCCAGAAAAATACTTACCTAGCATGTGTAGAGCAGGCCTCG
ACCCTCAGCACTCGCTACACTGGGGATGGAGGCACATCCATCCATCCCAGCCCCAGGCATGGAG
ATACTTTTTCCCCCGAGTCTTACATTATAGCCCAAGCTGCCCTGGAACTCACTATGTAGCTCAG
GCTGGCCCAGAGCTGGAAGTATTTCATCCCTCCTGAGTGTTGGTTGGAATTGTGGTTATGAAGC
CGCACACTTGGCTTTCCCCTCTAGGCCATGCTGTCTTTCTATCAGGGATCTAGCTTTGCTCTTA
AAGAACAAGTGATTGAGAACGCAAAGAGACAATCAAGCCAGGCTGTGTTCTCCTAAAAGTTGAC
TTATATAAGCAGGTCAGACTTGGCTCAAAAGGCGAAAAAGCCTCGGTGAACAGAGAGGCTCCCT
CTGAAGGCAGCAACCAGACAGTAGCAACAGACTATGGGAAGTGATGGTCTCAGCCAATAGAAAC
ATACTGTGGCTGCAGAGAAGAACAAAAGCCAAGTATCCCATGATTCTATGAGACAGACAGACAG
ACAGACAGACAGACAGATAGACAAAGAGAAATACAGAGAGGCAGAGAGAGAGAGAGATTAACCA
CAGCCCAGGTGCACATAGTGTTGATACCCTGAATACCGCCAGTATGGAGAAACGAGAGGGCTCT
GAGATCTGACCACATTCTGAGTCTTGGATTGTTATGCCTACCAAGTCCCTGGGCCTTGCAGTGA
GTCCTTCTGTTGCAAATTAACAGGGACCTATCTAATTTTTGGTGACAAGCTCATACCTTGGAAG
CAGGGTAGCTCATAGATTACCAGCTGTGGATGCCAACGTTCTACCTGGAGTGTTTTTGTGTGAG
TGGAGAGAGAAAGCAGAAGCTGTTGTGATAGAACCACGGCTCGCGTCCAGACAGACCACACCAG
GCCAATATGGTTCCACGTGGAAGAGGTTTATTGAGGACGATGGAGACAAGAGGGGAAAAGAGAG
AGAGAAGAAAAAAATAAAAAGGAAGGGAGCAGAAAGGGTCTGCCTTCTATTAAAACTGTGATGT
AACTGTTCCCAGGTGAAGGTGGGAGCTGAACCAAATGTATGCTGGGAATGTATGGCCGTTGCCA
TGGCAACAGATGCACAGGTCCTAGGTCCCTGTCACCTGTAAGTGACATCACTGCTGGAGGCGAA
AGCGGTTCCTGATAGGAACAGAAGCTGGCTTACCCAGCATGACTGATGACCACGGCCTGGAGGA
CTGCTCCTTTTTAGCATGGATATGTTTTTGCTTCATCAAGAAAGAGGACATCATCAAGACAATA
GGGTAGAACCCTGAGTATCTGATGAGGCAAATTTAGGAAGGCTCTGGATATGGAGGGTGGTGGT
AATTACGTAATAACATGCCTACTGAAACTATTTAAACATATCTGAAAATGGTTAGCCTGGCAAA
TTTTGCCTTATATATATTTAACTGCCACAAACATTTTAGCTGGGCATGGTAACACACACCTGTA
ATCCCAGCACTGAGGAAATTATTGTTAAAGATTTAGTATGTAACAAATATTGAGAATTTATGGT
AAACCTGGAACACAAAATCTCAAATGACAAAATTACTGATTTTTCCATACTTATTACCACCACA
GTGTTTGCGTGGAGATCAGAGGACAGCGTTCTGAGGAGTGGGTTACTGCAGTCTACAAAAACAG
TACCCAGAGATGGCTGAGGTTTTAGTAGACATGGTCAGCCAGGGAGTCTTCAGCTGCAACCCGA
ATTGCGGTCCATGTTGGGGGAACTGAGACATCTCACTGGAAATGTACTATAGAGGGGGAAAGAC
CTGAACTGCATCCAGGGACCAAGCAGATGATGTGTGTTAGGCCAGGATTTCCCAAAACTGTGGT
TTTTTTGGAACACATGAGTTCTATAGAGATAGAGCAAGCAAGATAGGGACAGTGGCTCTGTGTT
CAAATTCATCCAAGAGAGGCTGTGTGTTCTCTCGCTCCAGGTTTTCTGATGAAAGGCTCTGACG
AGGCACCATTTGTAAGGATCTCCCAAATGGATCAGACCATGGAGTAAGACCCTTTACCTGTTGC
ACCTTGCACTGAAGATGTGTTCTGCAGAGGGGTGGACCATTGACTGTGCTGACACGACATTAAA
TTTGCATGTAGAAATAAGGCTACAGTAGAGATTCCTCTAGCAATGTGGCATGGCCACAGCCTCT
CATAATGCACTTCAATAGGCTTTGAAACAGACAATTCCAAAACTGTATGCAGAAAAGACTTCAG
GTCTTCCTTGTCGGTTGAAGGGAAAGTAGCCTAGAGACGTGTATGTAGTCATTTGAGTTTCATA
GGTTGGAAAGTGTGAAAGAAAGCGATCATTGATGTGTACTATGTAAAAGCTAACTCTTTTTCCC
CTTGATTAGAAATTTCAATCTGTTCCTATCACTTCACATTGAATATGACATTTTAATATAGAAA
TACAATAGGATATAAGCTGACTGAGGGTACACTTCAGTGGTAGACTGGGTACTTAGCCTTCTGT
CCAGGCCCAGTACCAAGCAAATAATATTTAAAAAGAATGTATGGAGTTGGCAAGGTTCCCCAGC
AGGTAAATGAACTTGCCACCCAACCTGACAACCTGAGTTCATCCTTAGGCCCCTTAGATCCTTG
GGTAGAGGGAGAGAATCAACTCCCCAAAGTTGTACACTCCCCAGAACCAAGGCAGGAGGAAAGA
AAGGCTCAATTTCCTAACGATATAAGTCCTTCACACTTCAGAAATAACACTTTGTGTAAACCTT
GCCTCATTCGACCCAAGGTTTAGGTTGCAGTTTGAATGTTAAATGTCCCGGCCAGCTCATTTGC
TTGAACATTTGGTCCCAGTCCAGTTGGTGGCACTGTTTCAGAACGTTCTAGAGCCTTTAGGAAG
TCAACCTTCGTCAGGAGAATGGATCACTGAGGGTTGACTTGAGGTCGGTAGATAGGAATTGTTT
CCCGCCCTATCTACGTTCTGCTTCCTGACTGAAGAGCCAGGGTGACCAGCTGCCTCCTGATCCT
GCTACCTTCCCTACCACGACAGACTGTCTCGTCAAACAATAAGCCAGAATAAACCCTTGCTCCT
TTAAGTGACCTCATGTCTGGTATTTGTTCCCAGCAACAAGGCAAACCACTGATACAGCTGTAAG
AATGTCATCTTAGGTCAGCGCTCCCGACCTCCCATGCTGTGGAAAATGCTGTAGCAAAGAGTGA
TTTGGGCTGGCACAGAGGAGGGAGAAAGTGAAGATTTCTCCACACGCTGCTCTCTGAAAGTCTC
AGAACAAGACAACTGGCTCACGCGAGTCACACGTGGGATGTTTAGACCCATCTGTGCTCTAAGA
CAAAACAGTTCTAGTATTCACCTATATATTCTCTTCATTGTGGAGACGGGCTTGCGCTATAGCC
CAGGGTAGCCTCTAACTGGGCATCCTTCTGTTTCCACCCACAAGCACTGTTACCTGTAAAATTT
AAATCATTCTGGAGTCACTTAAAACGCTGTGCAAATAGTCGCCACCCTGTCTGGTTCAGTGAAC
AATCACCAGAAGTCTGCACATGGTTAGTTCAGACAAAATGGCTTTTTTTTCTTGAATATTTCCT
GCCTGCAGCTGGCTGACTCTTCAGTGTGGAAGCTGTGGATTTAAAGCATTGTCAGGGCTGGCCT
TTATTCTATTTCCGTTTTGGAGTTCTAGAGATTGTACTGATGGCCTGTGTACAATAGAAAAAGC
ACTCTACCCACCGAGACGTATCCCAAGCCCTTTGAAAGATTTTTAAAAGAGTTTGGGGACAGGG
TCTTATTCAATTGACCAGTCTACTCTTGGTTTCACTCTATAGCCCAGACAGGCCTTAAACTTGC
AATCCCCCTGACTCAGTTTCCAAAATACTGGGGATTACAAGCCTGTGCTACTAGGCCCAAGTTA
TTGCATATTCATAAAAAGATTTGATACAAACTATTTGTCTACATTTCTCAAAATTAATTAGCTA
CATTTCTAATGGGGATTAGCGAAGGTGAGGCCACATCAGAGCCAACCCCACAGCTAGAGGAACA
CAGGGGTCTTTTCTCACCTCTCCACTCCCAGGGGTTCTGACTCTTAGAGAAAGCCCCAGAATTT
GCCACAAGTTACCACAAGTTACTGTCATGTTGAGCACCATGGGACCTGTCAAAGAACAAGAAGT
GCCACCGGACCGGCTGACAGTCACACAGCGTGGTTGAGTGTTTGCAGAAGACTCCAGGTGGGCT
GAGATGGAGGGACCCACCTCTCCCTGGGCACTGGGCAGGTGTCAGCATTACTCGAAGTTAAAAA
TCTCTTTAAATCCCTACCAGCCTTACAATAACTTAGGTTCTTGTAAACATCCCTTCTGATGCTC
ATTTCCATATACATGGCTGGGGAGCCATGACTCTGATTGGCAGCTGTGTCTCTCTTCCCTGGCT
GCCTAGGATAAGAACTCTCAGCTAAACAGCCAGCTTGACTTCTCTCATGCTAATACCCGCTGTT
TTGAACTCTCCATGAACACTTTGAAAAGCTATGTAGCTACCTCCCGTTACTTACTCTGGCTCCT
GAAGGGGGAGCGGTTGTGTGGGAACCATAGCACCAGAAGTTTTGCTGTGGCAAGCCTCAGTGAA
CTCTGGATAACACTGTAACCTCATCTACTCAAGCCAGAGGGGAGGGCTTTCCGTACTGTTGACC
TGGTAGTGGAAGGGTCACAGTGACAACATTTGCATGGGAGGTTTGTTGTGATTAGCGTAGCTCC
CACCTTTTCTGTTCATTTGGTGAATTGGAGAAGCCCAGCCATATGACAACTACAGAGGAGACAC
CTGAACAGTCTGAGGGAATGGCCAAGTGGGAATAAGGGGACAGTGGAGGCAGTCAGAGGATGAA
GAGTTAGGACAGATAAAAAGAAAAAAGAAAAAAGAAAAAAAGCACAGACCACTGTAAAGAGATA
GAAAAGCCAGATGTAGTGGTGTTCACCTTTAATCCCAGGCCTAGAAAACACTGCAGATGCAGAT
AGAGGACAGCCAAGACTGCATAGACAGACCCTGTCTCAAA

hide sequence

RefSeq Acc Id:

XM_039096007 ⟹ XP_038951935

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	23,959,124 - 23,981,978 (+)	NCBI
mRatBN7.2	17	23,753,359 - 23,776,251 (+)	NCBI

RefSeq Acc Id:

XM_039096008 ⟹ XP_038951936

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	23,959,134 - 23,981,978 (+)	NCBI
mRatBN7.2	17	23,753,400 - 23,776,251 (+)	NCBI

RefSeq Acc Id:

XM_063276689 ⟹ XP_063132759

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	23,959,124 - 23,981,978 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001138493	(Get FASTA)	NCBI Sequence Viewer
	XP_006253842	(Get FASTA)	NCBI Sequence Viewer
	XP_038951935	(Get FASTA)	NCBI Sequence Viewer
	XP_038951936	(Get FASTA)	NCBI Sequence Viewer
	XP_063132759	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000057088
	ENSRNOP00000057088.2

RefSeq Acc Id:	NP_001138493 ⟸ NM_001145021
- UniProtKB:	D4AAN9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVETQSPGKECAVLPLWVLTVTSCPLPSAIREQLRVHHSLRCHRDNHYELLHSFYWLSCYSRGS TLSGNGLGPLCVTENPELLAGPWAIPEETTDPAENQEEDFLRDPNLHLNIEESDKEFMAVREEL YDSLMNRRWHCLDTVLSNVPDELPQCEVF hide sequence

RefSeq Acc Id:	XP_006253842 ⟸ XM_006253780
- Peptide Label:	isoform X4
- Sequence:	show sequence MVETQSPGKECAVLPLWVLTVTSCPLPSAIREQLRVHHSLRCHRDNHYELLHSFYWLSCYSRGS TLSGNGLGPLCVTENPELLAGPWAIPEETTDPAENQEEDFLRDPNLHLNIEESDKEFMAVREEL YDSLMNRRWHCLDTVLSNVPDELPQCEVSVRHALQLPY hide sequence

Ensembl Acc Id:

ENSRNOP00000057088 ⟸ ENSRNOT00000060340

RefSeq Acc Id:	XP_038951935 ⟸ XM_039096007
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038951936 ⟸ XM_039096008
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063132759 ⟸ XM_063276689
- Peptide Label:	isoform X2

Protein Domains

tRNA selenocysteine 1-associated protein 1 C-

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4AAN9-F1-model_v2	AlphaFold	D4AAN9	1-157	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1562963	AgrOrtholog
BioCyc Gene	G2FUF-9727	BioCyc
Ensembl Genes	ENSRNOG00000039379	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000060340	ENTREZGENE
	ENSRNOT00000060340.4	UniProtKB/TrEMBL
InterPro	C6orf52-like	UniProtKB/TrEMBL
	TSAP1_C	UniProtKB/TrEMBL
KEGG Report	rno:498729	UniProtKB/TrEMBL
NCBI Gene	498729	ENTREZGENE
PANTHER	PTHR37457	UniProtKB/TrEMBL
	SIMILAR TO HUMAN CHROMOSOME 6 OPEN READING FRAME 52	UniProtKB/TrEMBL
Pfam	Trnau1ap	UniProtKB/TrEMBL
PhenoGen	C17h6orf52	PhenoGen
RatGTEx	ENSRNOG00000039379	RatGTEx
UniProt	D4AAN9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-08-03	C17h6orf52	similar to human chromosome 6 open reading frame 52	RGD1562963	similar to chromosome 6 open reading frame 52	Name and Symbol changed	629549	APPROVED
2008-04-30	RGD1562963	similar to chromosome 6 open reading frame 52	RGD1562963_predicted	similar to chromosome 6 open reading frame 52 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1562963_predicted	similar to chromosome 6 open reading frame 52 (predicted)	LOC498729	similar to chromosome 6 open reading frame 52	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC498729	similar to chromosome 6 open reading frame 52			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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