Rbmx2 (RNA binding motif protein, X-linked 2)

Gene: Rbmx2 (RNA binding motif protein, X-linked 2) Rattus norvegicus

Analyze

Symbol:

Rbmx2

Name:

RNA binding motif protein, X-linked 2

RGD ID:

1562693

Description:

Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in endoplasmic reticulum; nuclear membrane; and nucleolus. Predicted to be part of U2 snRNP and U2-type precatalytic spliceosome. Orthologous to human RBMX2 (RNA binding motif protein X-linked 2); INTERACTS WITH 6-propyl-2-thiouracil; amitrole; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC367930; RGD1562693; RNA-binding motif protein, X-linked 2; similar to RNA binding motif protein, X-linked 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RBMX2 (RNA binding motif protein X-linked 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Rbmx2 (RNA binding motif protein, X-linked 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rbmx2 (RNA binding motif protein X-linked 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RBMX2 (RNA binding motif protein X-linked 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RBMX2 (RNA binding motif protein X-linked 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rbmx2 (RNA binding motif protein X-linked 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RBMX2 (RNA binding motif protein X-linked 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RBMX2 (RNA binding motif protein X-linked 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rbmx2 (RNA binding motif protein X-linked 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	STK38 (serine/threonine kinase 38)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	RBMX2 (RNA binding motif protein X-linked 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rbmx2 (RNA binding motif protein, X-linked 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rbmx2 (RNA binding motif protein X-linked 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG10466	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	IST3	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	rbmx-2	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rbmx2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	132,766,395 - 132,774,120 (+)	NCBI		GRCr8
mRatBN7.2	X	127,888,514 - 127,896,239 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	127,888,438 - 127,896,869 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	130,014,285 - 130,022,027 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	133,585,048 - 133,592,773 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	131,111,456 - 131,119,198 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	135,550,931 - 135,558,440 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	135,550,834 - 135,558,440 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	135,621,255 - 135,628,591 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	135,113,789 - 135,121,414 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	126,836,235 - 126,843,698 (+)	NCBI		Celera
Cytogenetic Map	X	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

genetic disease (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

amitrole (EXP)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

cadmium dichloride (ISO)

caffeine (ISO)

casticin (ISO)

CGP 52608 (ISO)

choline (ISO)

cisplatin (ISO)

cyclosporin A (ISO)

dicrotophos (ISO)

dioxygen (ISO)

doxorubicin (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

FR900359 (ISO)

L-methionine (ISO)

methimazole (EXP)

methotrexate (ISO)

methyl methanesulfonate (ISO)

methylparaben (ISO)

paracetamol (EXP)

permethrin (ISO)

pirinixic acid (ISO)

pregnenolone 16alpha-carbonitrile (EXP)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

testosterone (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mRNA splicing, via spliceosome (IBA,IEA,ISO,ISS)

Cellular Component

endoplasmic reticulum (IEA,ISO)

nuclear membrane (IEA,ISO)

nucleolus (IEA,ISO)

nucleus (ISO,ISS)

precatalytic spliceosome (IBA)

U2 snRNP (IBA)

U2-type precatalytic spliceosome (ISO,ISS)

Molecular Function

protein binding (ISO)

RNA binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:22658674	PMID:29360106

Genomics

Comparative Map Data

Rbmx2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	132,766,395 - 132,774,120 (+)	NCBI		GRCr8
mRatBN7.2	X	127,888,514 - 127,896,239 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	127,888,438 - 127,896,869 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	130,014,285 - 130,022,027 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	133,585,048 - 133,592,773 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	131,111,456 - 131,119,198 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	135,550,931 - 135,558,440 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	135,550,834 - 135,558,440 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	135,621,255 - 135,628,591 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	135,113,789 - 135,121,414 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	126,836,235 - 126,843,698 (+)	NCBI		Celera
Cytogenetic Map	X	q36	NCBI

RBMX2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	130,401,987 - 130,413,656 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	130,401,987 - 130,413,656 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	129,535,961 - 129,547,630 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	129,363,624 - 129,374,998 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	129,261,758 - 129,273,163	NCBI
Celera	X	129,922,409 - 129,933,783 (+)	NCBI		Celera
Cytogenetic Map	X	q26.1	NCBI
HuRef	X	118,931,323 - 118,942,334 (+)	NCBI		HuRef
CHM1_1	X	129,447,576 - 129,458,950 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	128,721,817 - 128,733,484 (+)	NCBI		T2T-CHM13v2.0

Rbmx2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	47,783,881 - 47,799,596 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	47,783,881 - 47,799,600 (+)	Ensembl		GRCm39 Ensembl
GRCm38	X	48,695,004 - 48,710,719 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	48,695,004 - 48,710,723 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	46,048,181 - 46,063,896 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	44,939,631 - 44,955,346 (+)	NCBI		MGSCv36	mm8
Celera	X	36,198,827 - 36,211,268 (+)	NCBI		Celera
Cytogenetic Map	X	A5	NCBI
cM Map	X	25.69	NCBI

Rbmx2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955473	4,654,748 - 4,664,590 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955473	4,654,257 - 4,664,419 (-)	NCBI	ChiLan1.0	ChiLan1.0

RBMX2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	129,822,590 - 129,833,670 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	129,826,204 - 129,837,284 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	119,528,923 - 119,540,319 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	129,820,864 - 129,831,902 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	129,820,864 - 129,831,902 (+)	Ensembl	panpan1.1		panPan2

RBMX2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	101,533,732 - 101,547,147 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	101,533,835 - 101,544,552 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	87,711,320 - 87,724,740 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	103,393,045 - 103,406,509 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	103,393,156 - 103,406,483 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	100,807,764 - 100,821,183 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	102,653,440 - 102,666,817 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	102,431,938 - 102,445,358 (+)	NCBI		UU_Cfam_GSD_1.0

Rbmx2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	99,741,791 - 99,754,645 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936479	1,233,899 - 1,245,619 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936479	1,232,921 - 1,245,665 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RBMX2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	106,880,912 - 106,890,390 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	106,880,912 - 106,890,391 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

RBMX2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	105,660,294 - 105,671,417 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	105,660,614 - 105,670,921 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666065	43,080,371 - 43,091,846 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rbmx2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624797	9,679,171 - 9,690,066 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624797	9,679,066 - 9,689,943 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Rbmx2
38 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	171
Count of miRNA genes:	134
Interacting mature miRNAs:	138
Transcripts:	ENSRNOT00000048922
Prediction methods:	Microtar, Miranda, Pita, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1598837	Memor13	Memory QTL 13	3.2		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	41052407	146860749	Rat
1598872	Memor14	Memory QTL 14	4.5		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	93956491	138956491	Rat
738025	Stresp3	Stress response QTL 3	4.61	0.0066	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	100567703	150256146	Rat
1598809	Memor15	Memory QTL 15	4.4		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	103312877	148312877	Rat
1598856	Memor1	Memory QTL 1	1.9		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	X	103312877	148312877	Rat
738029	Stresp2	Stress response QTL 2	3.4	0.0004	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	112934952	138400867	Rat
10059603	Bw174	Body weight QTL 174	3.4	0.025	body mass (VT:0001259)	body weight (CMO:0000012)	X	113937816	152453651	Rat
634346	Insul4	Insulin level QTL 4	0		blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	X	126975089	152453651	Rat

Markers in Region

RH137421

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	127,895,929 - 127,896,126 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	135,558,131 - 135,558,327	NCBI	Rnor6.0
Rnor_5.0	X	135,628,282 - 135,628,478	UniSTS	Rnor5.0
RGSC_v3.4	X	135,121,105 - 135,121,301	UniSTS	RGSC3.4
Celera	X	126,843,389 - 126,843,585	UniSTS
RH 3.4 Map	X	925.2	UniSTS
Cytogenetic Map	X	q35	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	26	22	16	9	16			66	20	34	3
Low		17	35	25	10	25	8	11	8	15	7	8	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001113786	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC158684	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473991	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000048922 ⟹ ENSRNOP00000043159

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	127,888,438 - 127,896,869 (+)	Ensembl
Rnor_6.0 Ensembl	X	135,550,834 - 135,558,440 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000093484

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	127,888,606 - 127,896,869 (+)	Ensembl
Rnor_6.0 Ensembl	X	135,550,986 - 135,557,929 (+)	Ensembl

RefSeq Acc Id:

NM_001113786 ⟹ NP_001107258

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	132,766,395 - 132,774,120 (+)	NCBI
mRatBN7.2	X	127,888,514 - 127,896,239 (+)	NCBI
Rnor_6.0	X	135,550,931 - 135,558,440 (+)	NCBI
Rnor_5.0	X	135,621,255 - 135,628,591 (+)	NCBI
RGSC_v3.4	X	135,113,789 - 135,121,414 (+)	RGD
Celera	X	126,836,235 - 126,843,698 (+)	RGD

Sequence:

show sequence

TGCGAATATGAACCCTTTAACTAAGGTGAAGCTGATCAACGAACTGAATGAGCGAGAGGTTCAA
CTTGGGGTGGCAGAAAAGGTGTCTTGGCACTCGGAATACAAAGACAGCGCCTGGATCTTTCTTG
GAGGGCTTCCTTATGAACTGACAGAAGGAGACATCATCTGTGTGTTCTCACAGTATGGAGAGAT
TGTCAACATTAATCTTGTGAGAGACAAGAAGACTGGGAAATCCAAAGGATTCTGTTTCCTGTGC
TATGAAGATCAGAGGAGCACAGTTCTGGCCGTTGACAATTTTAATGGAATTAAGATTAAAGGAA
GAACTATCCGTGTGGACCATGTGGCAAACTACCGGGCTCCTCAGGAATCAGAAGATGTGGATGA
TGTGACTAGAGAGCTCCAGGAGAAGGGCTGTGGGGCTAAAACACCCCCATCAAGTCCTCCTGAA
GTCTCTGAAGATGAAGATGCCAAAGTCACAAAAAAGCCCAAAAAAGACAAAAAAGAGAAAAAGA
AGAAGAAAGAAAAAGAGAAGACTGAACGCCCGGTCCAAGCAGAGCTGCCATCCTGCTCCAGAAG
CAAGACAGTAAAGGAGACGGATGAGCAGAGTGCGAAGAAGCACAGCAGCAAGCCCTCAGAGAGA
GCGCAGAAATCTGAATGTAGAGAGAGGAAGAAGAGCCACTCTGGTTCCCCTGATGGCAGAACTT
CTTGCCGTGGTAGAGCAGAGGAACCTGAGTGGGAGGCAAAGAAAGAGAAACACAAGCATGAGCA
TAAGCCCTCAAGCAGGAGGGAGGGAGAAGAAAAGAGCAGAGATAAGGATAGAGGGAGGAGCTCA
GGTACTCATTCCAGCAGGCATCATGGGCATTCTGAAGGGCGGAGTCATAGAAGTAGGAGTAGGA
GTAGGAGTAGGAGTCCAGATAGGTCCCATAGGCATAAAAAGCACAGGTACTCTCATGAGCGCGA
GTCCTTCCATGCCAGTGACCGTAGACATTACTGAAGCCTGTTCCAGCTGCCCAGTTCTTTGAAA
ATGAATCTTGTTGCATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001107258	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI58685	(Get FASTA)	NCBI Sequence Viewer
	B0BN49	(Get FASTA)	NCBI Sequence Viewer
	EDM10926	(Get FASTA)	NCBI Sequence Viewer
	EDM10927	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000043159
	ENSRNOP00000043159.4
	ENSRNOP00000079639.1
	ENSRNOP00055020873

RefSeq Acc Id:

NP_001107258 ⟸ NM_001113786

- UniProtKB:

B0BN49 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MNPLTKVKLINELNEREVQLGVAEKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVN
INLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVANYRAPQESEDVDDVT
RELQEKGCGAKTPPSSPPEVSEDEDAKVTKKPKKDKKEKKKKKEKEKTERPVQAELPSCSRSKT
VKETDEQSAKKHSSKPSERAQKSECRERKKSHSGSPDGRTSCRGRAEEPEWEAKKEKHKHEHKP
SSRREGEEKSRDKDRGRSSGTHSSRHHGHSEGRSHRSRSRSRSRSPDRSHRHKKHRYSHERESF
HASDRRHY

hide sequence

RefSeq Acc Id:

ENSRNOP00000043159 ⟸ ENSRNOT00000048922

Protein Domains

RRM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B0BN49-F1-model_v2	AlphaFold	B0BN49	1-328	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13702015

Promoter ID:

EPDNEW_R12538

Type:

initiation region

Name:

Rbmx2_1

Description:

RNA binding motif protein, X-linked 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	X	135,550,894 - 135,550,954	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1562693	AgrOrtholog
BioCyc Gene	G2FUF-1125	BioCyc
Ensembl Genes	ENSRNOG00000007371	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00055014967	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000048922	ENTREZGENE
	ENSRNOT00000048922.7	UniProtKB/Swiss-Prot
	ENSRNOT00000093484.2	UniProtKB/TrEMBL
	ENSRNOT00055025594	UniProtKB/Swiss-Prot
Gene3D-CATH	3.30.70.330	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:8373764	IMAGE-MGC_LOAD
InterPro	Nucleotide-bd_a/b_plait_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RRM_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RRM_Ist3-like	UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
KEGG Report	rno:367930	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:187694	IMAGE-MGC_LOAD
NCBI Gene	367930	ENTREZGENE
PANTHER	RNA-BINDING MOTIF PROTEIN, X-LINKED 2	UniProtKB/Swiss-Prot
	RNA-BINDING MOTIF PROTEIN, X-LINKED 2	UniProtKB/Swiss-Prot
	RNA-BINDING MOTIF PROTEIN, X-LINKED 2	UniProtKB/TrEMBL
	RNA-BINDING MOTIF PROTEIN, X-LINKED 2	UniProtKB/TrEMBL
Pfam	RRM_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Rbmx2	PhenoGen
PROSITE	RRM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000007371	RatGTEx
	ENSRNOG00055014967	RatGTEx
SMART	RRM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF54928	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I5ZNI0_RAT	UniProtKB/TrEMBL
	B0BN49	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-29	Rbmx2	RNA binding motif protein, X-linked 2	RGD1562693_predicted	similar to RNA binding motif protein, X-linked 2 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1562693_predicted	similar to RNA binding motif protein, X-linked 2 (predicted)	LOC367930	similar to RNA binding motif protein, X-linked 2	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC367930	similar to RNA binding motif protein, X-linked 2			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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