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Gene: Cfap126 (cilia and flagella associated protein 126) Rattus norvegicus

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Symbol:

Cfap126

Name:

cilia and flagella associated protein 126

RGD ID:

1562658

Description:

Predicted to be involved in cilium organization and flagellated sperm motility. Predicted to be located in apical plasma membrane and axonemal microtubule. Predicted to be active in axonemal B tubule inner sheath; ciliary basal body; and sperm flagellum. Orthologous to human CFAP126 (cilia and flagella associated protein 126); INTERACTS WITH 17alpha-ethynylestradiol; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hypothetical protein LOC498278; LOC498278; RGD1562658; similar to RIKEN cDNA 1700009P17; uncharacterized protein LOC498278; UPF0740 protein C1orf192 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	86,059,142 - 86,075,034 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	86,059,142 - 86,075,034 (+)	Ensembl				GRCr8
mRatBN7.2	13	83,526,657 - 83,542,552 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	83,526,657 - 83,542,552 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	86,032,342 - 86,048,294 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	87,430,580 - 87,446,530 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	84,662,280 - 84,678,253 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	89,480,058 - 89,495,949 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	89,480,058 - 89,495,949 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	94,107,559 - 94,123,450 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	86,995,646 - 87,012,470 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	83,158,501 - 83,174,105 (+)	NCBI		Celera
Cytogenetic Map	13	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

(1->4)-beta-D-glucan (ISO)

17alpha-ethynylestradiol (EXP)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

C60 fullerene (EXP)

cadmium dichloride (EXP)

Cuprizon (EXP)

diethylstilbestrol (ISO)

endosulfan (EXP)

genistein (ISO)

glyphosate (EXP)

inulin (ISO)

ketamine (EXP)

lead diacetate (EXP)

lead(0) (ISO)

mancozeb (ISO)

methimazole (EXP)

okadaic acid (ISO)

paracetamol (EXP)

perfluorooctane-1-sulfonic acid (ISO)

sodium arsenite (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

triptonide (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cilium organization (IBA,ISO)

flagellated sperm motility (ISO)

Cellular Component

apical plasma membrane (ISO)

axonemal B tubule inner sheath (ISO)

axonemal microtubule (IEA,ISO)

ciliary basal body (IBA,ISO)

cilium (IEA,ISO)

sperm flagellum (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:25296022

Genomics

Comparative Map Data

Cfap126
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	86,059,142 - 86,075,034 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	86,059,142 - 86,075,034 (+)	Ensembl				GRCr8
mRatBN7.2	13	83,526,657 - 83,542,552 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	83,526,657 - 83,542,552 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	86,032,342 - 86,048,294 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	87,430,580 - 87,446,530 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	84,662,280 - 84,678,253 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	89,480,058 - 89,495,949 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	89,480,058 - 89,495,949 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	94,107,559 - 94,123,450 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	86,995,646 - 87,012,470 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	83,158,501 - 83,174,105 (+)	NCBI		Celera
Cytogenetic Map	13	q24	NCBI

CFAP126
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	161,364,733 - 161,367,876 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	161,364,733 - 161,367,885 (-)	Ensembl			hg38	GRCh38
GRCh37	1	161,334,523 - 161,337,666 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	159,601,145 - 159,604,288 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	1	134,401,651 - 134,404,794 (-)	NCBI		Celera
Cytogenetic Map	1	q23.3	NCBI
HuRef	1	132,691,299 - 132,694,451 (-)	NCBI		HuRef
CHM1_1	1	162,730,776 - 162,733,928 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	160,502,177 - 160,505,320 (-)	NCBI		T2T-CHM13v2.0

Cfap126
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	170,941,326 - 170,954,525 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	170,941,487 - 170,954,536 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	171,113,912 - 171,126,956 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	171,113,918 - 171,126,967 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	173,051,792 - 173,057,098 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	172,958,336 - 172,963,642 (+)	NCBI		MGSCv36	mm8
Celera	1	173,571,178 - 173,576,544 (+)	NCBI		Celera
Cytogenetic Map	1	H3	NCBI
cM Map	1	78.96	NCBI

Cfap126
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955468	13,085,324 - 13,088,105 (-)	Ensembl
ChiLan1.0	NW_004955468	13,085,324 - 13,088,022 (-)	NCBI	ChiLan1.0	ChiLan1.0

CFAP126
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	88,486,728 - 88,489,867 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	88,176,991 - 88,180,459 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	136,774,574 - 136,777,713 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	140,684,924 - 140,686,571 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	140,685,157 - 140,688,063 (-)	Ensembl			panPan2	panpan1.1

CFAP126
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	21,158,212 - 21,176,889 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	38	21,158,108 - 21,161,261 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	21,232,675 - 21,251,341 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	21,275,553 - 21,294,210 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	38	21,275,466 - 21,278,618 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	38	21,172,675 - 21,191,256 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	38	21,578,927 - 21,581,942 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	38	21,986,919 - 22,005,579 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Cfap126
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	7,430,450 - 7,433,655 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936903	639,199 - 642,259 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936903	638,391 - 642,241 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CFAP126
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	89,120,477 - 89,133,039 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	4	89,108,048 - 89,133,525 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	96,964,842 - 96,990,454 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CFAP126
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	2,608,511 - 2,612,088 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	2,608,942 - 2,611,852 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666038	1,665,794 - 1,670,890 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cfap126
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624794	21,878 - 53,363 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Cfap126
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	50,272,695 - 50,288,197 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Cfap126
59 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	32
Count of miRNA genes:	29
Interacting mature miRNAs:	32
Transcripts:	ENSRNOT00000050804
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1298066	Bp159	Blood pressure QTL 159		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	48639634	93639634	Rat
10755495	Bp387	Blood pressure QTL 387	3.78		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37216241	90057603	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	38975045	103588154	Rat
8655951	Rf63	Renal function QTL 63	12.2		blood urea nitrogen amount (VT:0005265)	plasma urea nitrogen level (CMO:0000586)	13	71610804	109350286	Rat
4889606	Gluco63	Glucose level QTL 63	2.86	0.003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	83286150	109350286	Rat
8655945	Rf61	Renal function QTL 61	3.6		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	13	71610804	89333251	Rat
71119	Thym2	Thymus enlargement QTL 2	3.8		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	13	48749814	87285480	Rat
1331783	Bp221	Blood pressure QTL 221	3.72886		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	71610804	89333251	Rat
8655959	Pur32	Proteinuria QTL 32	8.4		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	72984506	99745408	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	67635937	109350286	Rat
1300166	Kidm6	Kidney mass QTL 6	3.93		kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	13	71610804	89333251	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	7421791	87286911	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
724564	Uae11	Urinary albumin excretion QTL 11	5.7		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	13	47354258	94285672	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
738027	Lnnr6	Liver neoplastic nodule remodeling QTL 6	3.3		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	65613454	109350286	Rat
7387280	Uae43	Urinary albumin excretion QTL 43	5.69	0.4174	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	68983334	109350286	Rat
738026	Lnnr5	Liver neoplastic nodule remodeling QTL 5	3.29		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	62424592	88113509	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	67635937	109350286	Rat
1576318	Schws5	Schwannoma susceptibility QTL 5		0.0351	nervous system integrity trait (VT:0010566)	post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)	13	64497900	109350286	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	64375743	109350286	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
2293341	Glom15	Glomerulus QTL 15	9.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	13	67635937	109350286	Rat

Markers in Region

D13Got70

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	83,530,449 - 83,530,566 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	89,483,848 - 89,483,964	NCBI	Rnor6.0
Rnor_5.0	13	94,111,349 - 94,111,465	UniSTS	Rnor5.0
RGSC_v3.4	13	86,999,435 - 86,999,552	RGD	RGSC3.4
RGSC_v3.4	13	86,999,436 - 86,999,552	UniSTS	RGSC3.4
Celera	13	83,162,004 - 83,162,120	UniSTS
RGSC_v3.1	13	87,188,319 - 87,188,436	RGD
RH 2.0 Map	13	629.2	RGD
Cytogenetic Map	13	q24	UniSTS

RH129459

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	83,542,182 - 83,542,373 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	89,495,580 - 89,495,770	NCBI	Rnor6.0
Rnor_5.0	13	94,123,081 - 94,123,271	UniSTS	Rnor5.0
RGSC_v3.4	13	87,012,101 - 87,012,291	UniSTS	RGSC3.4
Celera	13	83,173,736 - 83,173,926	UniSTS
RH 3.4 Map	4	219.03	UniSTS
Cytogenetic Map	13	q24	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	11	60	152	91	90	59	87	59	6	339	179	10	131	77	92	31	12	12

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443887	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443888	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443889	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769751	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769752	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598893	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598894	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598895	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272544	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC099236	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC115458	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ219903	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000050804 ⟹ ENSRNOP00000043416

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	86,059,142 - 86,075,034 (+)	Ensembl
mRatBN7.2 Ensembl	13	83,526,657 - 83,542,552 (+)	Ensembl
Rnor_6.0 Ensembl	13	89,480,058 - 89,495,949 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113043 ⟹ ENSRNOP00000092503

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	86,065,165 - 86,075,009 (+)	Ensembl
mRatBN7.2 Ensembl	13	83,532,740 - 83,542,552 (+)	Ensembl

RefSeq Acc Id:

NM_001109075 ⟹ NP_001102545

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,059,142 - 86,075,034 (+)	NCBI
mRatBN7.2	13	83,526,657 - 83,542,552 (+)	NCBI
Rnor_6.0	13	89,480,058 - 89,495,949 (+)	NCBI
Rnor_5.0	13	94,107,559 - 94,123,450 (+)	NCBI
RGSC_v3.4	13	86,995,646 - 87,012,470 (+)	RGD
Celera	13	83,158,501 - 83,174,105 (+)	RGD

Sequence:

show sequence

GCAAAGCGTTTCTTGACAGCACTTTGAGACCAAAATGCGGGACTTGAGGATTTGCAGGCCACTG
GGCTCATCCCCAGCATCCGGTTCCTTCTCCGGGACGCAGCCTGTTCGGCCTTGTCCCCTGTGCA
CCTCCCAACCCCCCGCCGCCTTCACGCCGGGTCCCACGGTCCCAGTAGAGCTTTCCGGGTAATC
AGGCAGAGAAAGGAAGGGGGCAGTGTGAACCCTAGAAGGTAGCCAACCCCTGCTGACTGGGAGT
TACTCCCAGAAGGCTGTCCTCCTGCAGTTGCTAGGCAACGAGTGTAAACAGCACTGGATCATGG
CCACTAACTACAGTGCCAACCAGTATGAAAGGGCTTACTTACCCAGGTACCTGCAGAACTGGTC
TCCTGCCAAGCCAACAAAAGAGAAAATCGCTACCCATGAAGGTTACACTCAGATAATCGCCAAC
GATCGAGGTCACCTCTTGCCTTCAGTGCCCCGTTCCAAGGCAAGTCCTTGGGGTTCCTACATAG
GCACCTGGCAAATGCCCCTGAAGATACCACCTGCTAAGGCGAACTTGACCGCCCGTACAACGGC
TGCTGCCGACTCCCTCACCGAATGGATACACAAGAATCCTGACCTACTCAATGCCTGTAATGGG
CTGCGTCCTGAAATCATCGGCAAGCCCCGTGATCTCAACAGTCAGAAGAAACAGAAGAAATCTG
TCACAAAGACTGTACAACAAGCACTAAATCCAACCATAATCCCCAGCTCCCCGGTGATCCAAGG
AGACAACCCGGATGAACCTCAGAGCTCACACCCCTCTGCGGGTCACACTCCAGGTCCCCAGACA
CCACTCAACTCTCCCAAGAATCCACCTCCGAGCCCAAGTTAGAGCACCAAGCGGGGCTTAGTCT
AGCTGAGATCCAGATGAGCAAAGCTGTGCGGGGTAAAGGCCATGCTAGGGTGACATTTTAGATA
CTGATTGAAATAAACAAGACCCTGTATTCAGAAGTGTGGAATAGGGAAATGGTGGGCCAGGAGT
AAAGGTAAATTTGGGAAAATAAACATTGTTTGCTTGTTAAATCTTTTACTGACCTGGGTTTTC

hide sequence

RefSeq Acc Id:

XM_008769752 ⟹ XP_008767974

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,070,057 - 86,075,012 (+)	NCBI
mRatBN7.2	13	83,538,573 - 83,542,537 (+)	NCBI
Rnor_6.0	13	89,491,607 - 89,495,934 (+)	NCBI

Sequence:

show sequence

GTCACAAAGTTTGTTTAAACAGTTGAAGATGTCATCCAAAGACAACCTGGAAATTCTGAAGCAG
GGTTAACTTATGTTGGAGAAAGAGCTCTTTACATGAAAGTTATCTCTACTTTGTTTTGGAAAAA
TTCAAAATCTAGTAACTGAGGCAGGCATAGCCGTCCTCCCCAGTGGTCCCGGGACTTTAGAAGC
AGAGGCAGGCAGGAAGATCCATGGCTACTTCTCAGTTCATTTTCTCACGTTTGTTTGGGCCTCG
ATAGTCTAAAATGAAAATGGACCTAAGTTTCAGAGAGAAAGGAAGGGGGCAGTGTGAACCCTAG
AAGGTAGCCAACCCCTGCTGACTGGGAGTTACTCCCAGAAGGCTGTCCTCCTGCAGTTGCTAGG
CAACGAGTGTAAACAGCACTGGATCATGGCCACTAACTACAGTGCCAACCAGTATGAAAGGGCT
TACTTACCCAGGTACCTGCAGAACTGGTCTCCTGCCAAGCCAACAAAAGAGGCAAGTCCTTGGG
GTTCCTACATAGGCACCTGGCAAATGCCCCTGAAGATACCACCTGCTAAGGCGAACTTGACCGC
CCGTACAACGGCTGCTGCCGACTCCCTCACCGAATGGATACACAAGAATCCTGACCTACTCAAT
GCCTGTAATGGGCTGCGTCCTGAAATCATCGGCAAGCCCCGTGATCTCAACAGTCAGAAGAAAC
AGAAGAAATCTGTCACAAAGACTGTACAACAAGCACTAAATCCAACCATAATCCCCAGCTCCCC
GGTGATCCAAGGAGACAACCCGGATGAACCTCAGAGCTCACACCCCTCTGCGGGTCACACTCCA
GGTCCCCAGACACCACTCAACTCTCCCAAGAATCCACCTCCGAGCCCAAGTTAGAGCACCAAGC
GGGGCTTAGTCTAGCTGAGATCCAGATGAGCAAAGCTGTGCGGGGTAAAGGCCATGCTAGGGTG
ACATTTTAGATACTGATTGAAATAAACAAGACCCTGTATTCAGAAGTGTGGAATAGGGAAATGG
TGGGCCAGGAGTAAAGGTAAATTTGGGAAAATAAACATTGTTTGCTTGTTAAATCTTTTA

hide sequence

RefSeq Acc Id:

XM_039090981 ⟹ XP_038946909

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,070,057 - 86,075,012 (+)	NCBI
mRatBN7.2	13	83,538,530 - 83,542,537 (+)	NCBI

RefSeq Acc Id:

XM_063272544 ⟹ XP_063128614

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,070,005 - 86,075,012 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102545	(Get FASTA)	NCBI Sequence Viewer
	NP_001430816	(Get FASTA)	NCBI Sequence Viewer
	NP_001430817	(Get FASTA)	NCBI Sequence Viewer
	NP_001430818	(Get FASTA)	NCBI Sequence Viewer
	XP_008767974	(Get FASTA)	NCBI Sequence Viewer
	XP_038946909	(Get FASTA)	NCBI Sequence Viewer
	XP_063128614	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL94591	(Get FASTA)	NCBI Sequence Viewer
	EDL94592	(Get FASTA)	NCBI Sequence Viewer
	EDL94593	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000043416
	ENSRNOP00000043416.2
	ENSRNOP00000092503.1

RefSeq Acc Id:	NP_001102545 ⟸ NM_001109075
- UniProtKB:	D3ZCQ6 (UniProtKB/TrEMBL), A6JFT6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATNYSANQYERAYLPRYLQNWSPAKPTKEKIATHEGYTQIIANDRGHLLPSVPRSKASPWGSY IGTWQMPLKIPPAKANLTARTTAAADSLTEWIHKNPDLLNACNGLRPEIIGKPRDLNSQKKQKK SVTKTVQQALNPTIIPSSPVIQGDNPDEPQSSHPSAGHTPGPQTPLNSPKNPPPSPS hide sequence

RefSeq Acc Id:	XP_008767974 ⟸ XM_008769752
- Peptide Label:	isoform X2
- Sequence:	show sequence MATNYSANQYERAYLPRYLQNWSPAKPTKEASPWGSYIGTWQMPLKIPPAKANLTARTTAAADS LTEWIHKNPDLLNACNGLRPEIIGKPRDLNSQKKQKKSVTKTVQQALNPTIIPSSPVIQGDNPD EPQSSHPSAGHTPGPQTPLNSPKNPPPSPS hide sequence

Ensembl Acc Id:

ENSRNOP00000043416 ⟸ ENSRNOT00000050804

RefSeq Acc Id:	XP_038946909 ⟸ XM_039090981
- Peptide Label:	isoform X3
- UniProtKB:	A6JFT7 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000092503 ⟸ ENSRNOT00000113043

RefSeq Acc Id:	XP_063128614 ⟸ XM_063272544
- Peptide Label:	isoform X1
- UniProtKB:	A6JFT6 (UniProtKB/TrEMBL), D3ZCQ6 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZCQ6-F1-model_v2	AlphaFold	D3ZCQ6	1-185	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698993

Promoter ID:

EPDNEW_R9517

Type:

multiple initiation site

Name:

Cfap126_1

Description:

cilia and flagella associated protein 126

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	89,492,008 - 89,492,068	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1562658	AgrOrtholog
BioCyc Gene	G2FUF-17390	BioCyc
Ensembl Genes	ENSRNOG00000034221	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000050804	ENTREZGENE
	ENSRNOT00000050804.4	UniProtKB/TrEMBL
	ENSRNOT00000113043.2	UniProtKB/TrEMBL
InterPro	Fltp	UniProtKB/TrEMBL
KEGG Report	rno:498278	UniProtKB/TrEMBL
NCBI Gene	498278	ENTREZGENE
PANTHER	PROTEIN FLATTOP	UniProtKB/TrEMBL
	PTHR34639	UniProtKB/TrEMBL
Pfam	CFAP126	UniProtKB/TrEMBL
PhenoGen	Cfap126	PhenoGen
RatGTEx	ENSRNOG00000034221	RatGTEx
UniProt	A0A8I6AGN8_RAT	UniProtKB/TrEMBL
	A6JFT6	ENTREZGENE, UniProtKB/TrEMBL
	A6JFT7	ENTREZGENE, UniProtKB/TrEMBL
	D3ZCQ6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2014-10-22	Cfap126	cilia and flagella associated protein 126	RGD1562658	similar to RIKEN cDNA 1700009P17	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1562658	similar to RIKEN cDNA 1700009P17	RGD1562658_predicted	similar to RIKEN cDNA 1700009P17 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1562658_predicted	similar to RIKEN cDNA 1700009P17 (predicted)	LOC498278	similar to RIKEN cDNA 1700009P17	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC498278	similar to RIKEN cDNA 1700009P17			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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