CFAP126 (cilia and flagella associated protein 126)

Gene: CFAP126 (cilia and flagella associated protein 126) Sus scrofa

Analyze

Symbol:

CFAP126

Name:

cilia and flagella associated protein 126

RGD ID:

14282577

Description:

INVOLVED IN cell projection organization (inferred); cilium organization (inferred); ASSOCIATED WITH autoimmune interstitial lung, joint, and kidney disease (ortholog); Charcot-Marie-Tooth disease type 1 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN apical plasma membrane (ortholog); axonemal B tubule inner sheath (ortholog); cilium (ortholog); INTERACTS WITH deoxynivalenol

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

C4H1orf192; protein Flattop; UPF0740 protein C1orf192 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	89,120,477 - 89,133,039 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	89,108,048 - 89,133,525 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	96,964,842 - 96,990,454 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autoimmune interstitial lung, joint, and kidney disease (ISO)

Charcot-Marie-Tooth disease type 1 (ISO)

gastrointestinal stromal tumor (ISO)

parathyroid carcinoma (ISO)

pheochromocytoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

deoxynivalenol (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell projection organization (IEA)

cilium organization (IBA,IEA)

Cellular Component

apical plasma membrane (ISO)

axonemal B tubule inner sheath (ISO)

axonemal microtubule (IEA)

ciliary basal body (IBA,IEA)

cilium (ISO)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:14681463	PMID:30032202

Genomics

Comparative Map Data

CFAP126
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	89,120,477 - 89,133,039 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	89,108,048 - 89,133,525 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	96,964,842 - 96,990,454 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CFAP126
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	161,364,733 - 161,367,876 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	161,364,733 - 161,367,876 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	161,334,523 - 161,337,666 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	159,601,145 - 159,604,288 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	134,401,651 - 134,404,794 (-)	NCBI		Celera
Cytogenetic Map	1	q23.3	NCBI
HuRef	1	132,691,299 - 132,694,451 (-)	NCBI		HuRef
CHM1_1	1	162,730,776 - 162,733,928 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	160,502,177 - 160,505,320 (-)	NCBI		T2T-CHM13v2.0

Cfap126
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	170,941,326 - 170,954,525 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	170,941,487 - 170,954,536 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	171,113,912 - 171,126,956 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	171,113,918 - 171,126,967 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	173,051,792 - 173,057,098 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	172,958,336 - 172,963,642 (+)	NCBI		MGSCv36	mm8
Celera	1	173,571,178 - 173,576,544 (+)	NCBI		Celera
Cytogenetic Map	1	H3	NCBI
cM Map	1	78.96	NCBI

Cfap126
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	86,059,142 - 86,075,034 (+)	NCBI		GRCr8
mRatBN7.2	13	83,526,657 - 83,542,552 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	83,526,657 - 83,542,552 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	86,032,342 - 86,048,294 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	87,430,580 - 87,446,530 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	84,662,280 - 84,678,253 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	89,480,058 - 89,495,949 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	89,480,058 - 89,495,949 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	94,107,559 - 94,123,450 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	86,995,646 - 87,012,470 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	13	83,158,501 - 83,174,105 (+)	NCBI		Celera
Cytogenetic Map	13	q24	NCBI

Cfap126
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955468	13,085,324 - 13,088,022 (-)	NCBI	ChiLan1.0	ChiLan1.0

CFAP126
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	88,486,728 - 88,489,867 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	88,176,991 - 88,180,459 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	136,774,574 - 136,777,713 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	140,684,924 - 140,686,571 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	140,685,157 - 140,688,063 (-)	Ensembl	panpan1.1		panPan2

CFAP126
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	21,158,212 - 21,176,889 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	38	21,158,108 - 21,161,261 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	21,232,675 - 21,251,341 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	21,275,553 - 21,294,210 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	38	21,275,466 - 21,278,618 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	38	21,172,675 - 21,191,256 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	38	21,578,927 - 21,581,942 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	38	21,986,919 - 22,005,579 (+)	NCBI		UU_Cfam_GSD_1.0

Cfap126
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	7,430,450 - 7,433,655 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936903	638,391 - 642,241 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CFAP126
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	2,608,511 - 2,612,088 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	2,608,942 - 2,611,852 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	1,665,794 - 1,670,890 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cfap126
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624794	21,878 - 53,363 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in CFAP126
563 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium	2		3	1	2	17	1	1	2
Low	8	4		4		6	1	2	1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013996824	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013996825	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001308304	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001308305	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001308306	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK231912	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FP565660	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01073014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000028177 ⟹ ENSSSCP00000023960

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	4	89,120,477 - 89,133,039 (+)	Ensembl

RefSeq Acc Id:

XM_013996824 ⟹ XP_013852278

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	89,108,058 - 89,133,525 (+)	NCBI

Sequence:

show sequence

GCGTCTTAACGGTGCAAACAGAGAATCCTAATACAAGGCCTGAAGCCTGGAGAAAAGGCGCGGC
AGGCTTTCCCGGAAGTCTGAGGAGGCGGATTAGCCTCCGCCCTCCGACATCCCGCCCCGCGCTC
GCCTACTCCGCCCAGCTTCTCGTCCGCGCGCCGCCTTCGATTCTCGCCTGCAAGTGTCGGGCCT
TCCCCGTCATCAGGTTTGCGAACGGCCCCGCCCGCTGGTTTGTCTTGGCCACCTCGGTTGGGAA
CCTTCCCGCAAATCAGGCCTGAGTCAGGACCGGAAGCCTGTGAAGTGCTGATCGGTTCCCGACA
GTGAGAGCACGAAGTCACGTTTCAGGGGAAAAGATTGGAGTGTCAGCCAAGAAAGTGCGTAACA
AAAAGGGGATGGCAGCCCCTGCGAATTGGGAGGTAGTCCCAGAAGGTCTGCCTTCTGCAGTTGC
CAGGCAACAAAGGTAAACAGCAGAAAGTGGCAGGATCATGGCCACTAACTACAGCGCCAACCAG
TATGAAAAAGCTTTCTCACCCAGGTATCTGCAGAACTGGTCTCTCGCCAAGCCAACAAAACAGA
GGATTTCTTCCCATGAAGGCTACACTCAGATTATCGCCAATGATCGTGGTCATCTGTTGCCTTC
AGTGCCCCGCTCCAAGGCAAGTCCCTGGGGTTCATTCATGGGCACCTGGGATATGCCTCTGAAG
GTACCCCCTGCTCGAGTGACCTTGACCTCCCGTACAGCTGCCGGTGCAGCCTCCCTCACCAAAT
GGATACAGAAAAATCCCAATTTACTGAAGGCCTCCAATGGGCTGCGTCCTGAAATCTTAGGCAA
GCCCCACGATCCAGACGGCCAGAGGAAATTTGGGAAGTCTATCATAAAGACAGTACAACAAGCT
CCAAGATCAACCATAATCCCAAGCTCCCCAGGCTCAAATCTCAATTCCCCAGATCATCCCCAAA
GCTCACATCCCTCTGCAGGTCACACTCCAGGTCCCCAAAGCCCAGCCAACTCTCCAAAGACCTC
ACTTGGAAGCCCGTGTATGCCTGAACACTGTGCAGGTCCTAAACTAGCTGAGGTCCAAAAATGC
CAACTTGGAACTCCATAAGGGACTAAGGGACCACACTGAGAAAAGCTGTCTGGGGACTGAGTGA
CACCCGGTCGGGGAAATTATGGATGGGAGTAAAGGCAAATTTGGAAAATTAACATTGTTGAGTC
TTTTACTGATTTGGATTTTTCCCTCTTGCTATGGCTGCCTCTTGTAACCCATAACTAGGAGGAG
GGTTGAAGGAAAGAGTAGGGAGAAGAAAACATTTTTACAAGGATTGAGTCAATTATACTCCAGA
AATGACCAGGAGGAAATTTGAGCAAAAGGAACATCAAATAACTAGTCCCTCACCCATCTCATTT
TTCACCCTGAATATGAACTACAACTTCAAAGTTTGAGGTACAGTCATTAGTAGAATATGTATAT
GCACATTTGGAGGAGGCGGGGGGTGGGGGGGA

hide sequence

RefSeq Acc Id:

XM_013996825 ⟹ XP_013852279

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	89,108,058 - 89,133,525 (+)	NCBI

Sequence:

show sequence

GCGTCTTAACGGTGCAAACAGAGAATCCTAATACAAGGCCTGAAGCCTGGAGAAAAGGCGCGGC
AGGCTTTCCCGGAAGTCTGAGGAGGCGGATTAGCCTCCGCCCTCCGACATCCCGCCCCGCGCTC
GCCTACTCCGCCCAGCTTCTCGTCCGCGCGCCGCCTTCGATTCTCGCCTGCAAGTGTCGGGCCT
TCCCCGTCATCAGTTTCAGGGGAAAAGATTGGAGTGTCAGCCAAGAAAGTGCGTAACAAAAAGG
GGATGGCAGCCCCTGCGAATTGGGAGGTAGTCCCAGAAGGTCTGCCTTCTGCAGTTGCCAGGCA
ACAAAGGTAAACAGCAGAAAGTGGCAGGATCATGGCCACTAACTACAGCGCCAACCAGTATGAA
AAAGCTTTCTCACCCAGGTATCTGCAGAACTGGTCTCTCGCCAAGCCAACAAAACAGAGGATTT
CTTCCCATGAAGGCTACACTCAGATTATCGCCAATGATCGTGGTCATCTGTTGCCTTCAGTGCC
CCGCTCCAAGGCAAGTCCCTGGGGTTCATTCATGGGCACCTGGGATATGCCTCTGAAGGTACCC
CCTGCTCGAGTGACCTTGACCTCCCGTACAGCTGCCGGTGCAGCCTCCCTCACCAAATGGATAC
AGAAAAATCCCAATTTACTGAAGGCCTCCAATGGGCTGCGTCCTGAAATCTTAGGCAAGCCCCA
CGATCCAGACGGCCAGAGGAAATTTGGGAAGTCTATCATAAAGACAGTACAACAAGCTCCAAGA
TCAACCATAATCCCAAGCTCCCCAGGCTCAAATCTCAATTCCCCAGATCATCCCCAAAGCTCAC
ATCCCTCTGCAGGTCACACTCCAGGTCCCCAAAGCCCAGCCAACTCTCCAAAGACCTCACTTGG
AAGCCCGTGTATGCCTGAACACTGTGCAGGTCCTAAACTAGCTGAGGTCCAAAAATGCCAACTT
GGAACTCCATAAGGGACTAAGGGACCACACTGAGAAAAGCTGTCTGGGGACTGAGTGACACCCG
GTCGGGGAAATTATGGATGGGAGTAAAGGCAAATTTGGAAAATTAACATTGTTGAGTCTTTTAC
TGATTTGGATTTTTCCCTCTTGCTATGGCTGCCTCTTGTAACCCATAACTAGGAGGAGGGTTGA
AGGAAAGAGTAGGGAGAAGAAAACATTTTTACAAGGATTGAGTCAATTATACTCCAGAAATGAC
CAGGAGGAAATTTGAGCAAAAGGAACATCAAATAACTAGTCCCTCACCCATCTCATTTTTCACC
CTGAATATGAACTACAACTTCAAAGTTTGAGGTACAGTCATTAGTAGAATATGTATATGCACAT
TTGGAGGAGGCGGGGGGTGGGGGGGA

hide sequence

RefSeq Acc Id:

XR_001308304

Type:

NON-CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	89,108,048 - 89,133,525 (+)	NCBI

Sequence:

show sequence

GCCAACTTCAGCGTCTTAACGGTGCAAACAGAGAATCCTAATACAAGGCCTGAAGCCTGGAGAA
AAGGCGCGGCAGGCTTTCCCGGAAGTCTGAGGAGGCGGATTAGCCTCCGCCCTCCGACATCCCG
CCCCGCGCTCGCCTACTCCGCCCAGCTTCTCGTCCGCGCGCCGCCTTCGATTCTCGCCTGCAAG
TGTCGGGCCTTCCCCGTCATCAGGTTTGCGAACGGCCCCGCCCGCTGGTTTGTCTTGGCCACCT
CGGTTGGGAACCTTCCCGCAAATCAGGCCTGAGTCAGGACCGGAAGCCTGTGAAGTGCTGATCG
GTTCCCGACAGTGAGAGCACGAAGTCACGTTTCAGGGGAAAAGATTGGAGTGTCAGCCAAGAAA
GTGCGTAACAAAAAGGGGATGGCAGCCCCTGCGAATTGGGAGGTAGTCCCAGAAGGTCTGCCTT
CTGCAGTTGCCAGGCAACAAAGGTAAACAGCAGAAAGTGGCAGGATCATGGCCACTAACTACAG
CGCCAACCAGCTTTTTTCAGGCCATCCCAAAACAGACATAAGGATGGATTTGGCCCATGGGCCA
CAATTTGCTGACCTCTGGTCTAAACCAGCACTGCAATAAAAAGATAATTATGAAAAAGCTTTCT
CACCCAGGTATCTGCAGAACTGGTCTCTCGCCAAGCCAACAAAACAGAGGATTTCTTCCCATGA
AGGCTACACTCAGATTATCGCCAATGATCGTGGTCATCTGTTGCCTTCAGTGCCCCGCTCCAAG
GCAAGTCCCTGGGGTTCATTCATGGGCACCTGGGATATGCCTCTGAAGGTACCCCCTGCTCGAG
TGACCTTGACCTCCCGTACAGCTGCCGGTGCAGCCTCCCTCACCAAATGGATACAGAAAAATCC
CAATTTACTGAAGGCCTCCAATGGGCTGCGTCCTGAAATCTTAGGCAAGCCCCACGATCCAGAC
GGCCAGAGGAAATTTGGGAAGTCTATCATAAAGACAGTACAACAAGCTCCAAGATCAACCATAA
TCCCAAGCTCCCCAGGCTCAAATCTCAATTCCCCAGATCATCCCCAAAGCTCACATCCCTCTGC
AGGTCACACTCCAGGTCCCCAAAGCCCAGCCAACTCTCCAAAGACCTCACTTGGAAGCCCGTGT
ATGCCTGAACACTGTGCAGGTCCTAAACTAGCTGAGGTCCAAAAATGCCAACTTGGAACTCCAT
AAGGGACTAAGGGACCACACTGAGAAAAGCTGTCTGGGGACTGAGTGACACCCGGTCGGGGAAA
TTATGGATGGGAGTAAAGGCAAATTTGGAAAATTAACATTGTTGAGTCTTTTACTGATTTGGAT
TTTTCCCTCTTGCTATGGCTGCCTCTTGTAACCCATAACTAGGAGGAGGGTTGAAGGAAAGAGT
AGGGAGAAGAAAACATTTTTACAAGGATTGAGTCAATTATACTCCAGAAATGACCAGGAGGAAA
TTTGAGCAAAAGGAACATCAAATAACTAGTCCCTCACCCATCTCATTTTTCACCCTGAATATGA
ACTACAACTTCAAAGTTTGAGGTACAGTCATTAGTAGAATATGTATATGCACATTTGGAGGAGG
CGGGGGGTGGGGGGGA

hide sequence

RefSeq Acc Id:

XR_001308305

Type:

NON-CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	89,108,048 - 89,133,525 (+)	NCBI

Sequence:

show sequence

GCCAACTTCAGCGTCTTAACGGTGCAAACAGAGAATCCTAATACAAGGCCTGAAGCCTGGAGAA
AAGGCGCGGCAGGCTTTCCCGGAAGTCTGAGGAGGCGGATTAGCCTCCGCCCTCCGACATCCCG
CCCCGCGCTCGCCTACTCCGCCCAGCTTCTCGTCCGCGCGCCGCCTTCGATTCTCGCCTGCAAG
TGTCGGGCCTTCCCCGTCATCAGTTTCAGGGGAAAAGATTGGAGTGTCAGCCAAGAAAGTGCGT
AACAAAAAGGGGATGGCAGCCCCTGCGAATTGGGAGGTAGTCCCAGAAGGTCTGCCTTCTGCAG
TTGCCAGGCAACAAAGGTAAACAGCAGAAAGTGGCAGGATCATGGCCACTAACTACAGCGCCAA
CCAGCTTTTTTCAGGCCATCCCAAAACAGACATAAGGATGGATTTGGCCCATGGGCCACAATTT
GCTGACCTCTGGTCTAAACCAGCACTGCAATAAAAAGATAATTATGAAAAAGCTTTCTCACCCA
GGTATCTGCAGAACTGGTCTCTCGCCAAGCCAACAAAACAGAGGATTTCTTCCCATGAAGGCTA
CACTCAGATTATCGCCAATGATCGTGGTCATCTGTTGCCTTCAGTGCCCCGCTCCAAGGCAAGT
CCCTGGGGTTCATTCATGGGCACCTGGGATATGCCTCTGAAGGTACCCCCTGCTCGAGTGACCT
TGACCTCCCGTACAGCTGCCGGTGCAGCCTCCCTCACCAAATGGATACAGAAAAATCCCAATTT
ACTGAAGGCCTCCAATGGGCTGCGTCCTGAAATCTTAGGCAAGCCCCACGATCCAGACGGCCAG
AGGAAATTTGGGAAGTCTATCATAAAGACAGTACAACAAGCTCCAAGATCAACCATAATCCCAA
GCTCCCCAGGCTCAAATCTCAATTCCCCAGATCATCCCCAAAGCTCACATCCCTCTGCAGGTCA
CACTCCAGGTCCCCAAAGCCCAGCCAACTCTCCAAAGACCTCACTTGGAAGCCCGTGTATGCCT
GAACACTGTGCAGGTCCTAAACTAGCTGAGGTCCAAAAATGCCAACTTGGAACTCCATAAGGGA
CTAAGGGACCACACTGAGAAAAGCTGTCTGGGGACTGAGTGACACCCGGTCGGGGAAATTATGG
ATGGGAGTAAAGGCAAATTTGGAAAATTAACATTGTTGAGTCTTTTACTGATTTGGATTTTTCC
CTCTTGCTATGGCTGCCTCTTGTAACCCATAACTAGGAGGAGGGTTGAAGGAAAGAGTAGGGAG
AAGAAAACATTTTTACAAGGATTGAGTCAATTATACTCCAGAAATGACCAGGAGGAAATTTGAG
CAAAAGGAACATCAAATAACTAGTCCCTCACCCATCTCATTTTTCACCCTGAATATGAACTACA
ACTTCAAAGTTTGAGGTACAGTCATTAGTAGAATATGTATATGCACATTTGGAGGAGGCGGGGG
GTGGGGGGGA

hide sequence

RefSeq Acc Id:

XR_001308306

Type:

NON-CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	89,125,153 - 89,133,525 (+)	NCBI

Sequence:

show sequence

GAACTCTAGCCTAAGAACCTCCATATGCCACAGGTTTGGCCCTAAAAAGACAAAAAAAAAAAAA
AAGAAAAGAAATACTTTCTCACAATATATAAGTTCTCTTTTTCATTGTTGTCTATGTGAGCATG
TGAGATAACAGAAAATATACATATTGGTCTCTGCTCCTGGTCCCTGGAACAGAGCTCCTGAAAC
CTTTGTAAATACCTAAGTGACAAGAGTACTGGAGCATATTTTGAGCTAATATTTGTTCTTTGAC
CCTGGTTTCTGACACAGTGCTCCTAAATCTCTTGCAATTTCCTGAGTAATAGGGGCAACTTTTG
TTCTAATGAGGTGATTTTTGATGGGCTCCTAGATGGGAGCTGGTCTCCAGCAAGACCAAGCCAG
CATCAGAAGCCTGGAATTCATCCCCATCCCCCATTCTCTGGAGAGAGGAGAGGTGCTGGAAGTG
GAATTAGTGATTGATCAGGCCTATGTAATGAAGCCTCCATAAGAATCCCCAGTGGACAGGGTCT
GGAGCATTTCCAGAGAGGATGTGGGAGGCTCCACACCCCCTTCCCACAACCTTCCCTGAGCATC
TCTTTCATCCAGATGTTGATCAGTATCTTTTATCATGTCTTTTTATTAAAAGCTGGTGAACAGT
AAGTAAACTATTTTCTCGAGTTCTGCAAGTCATTCTAGCAAAGTAATTTAACTTAAGGGGGAGT
CACAGAAACCTCTGACTTGTAGCTGATTGGTCAGAAGCACATGTAACAACCTGTACTTGTGATT
GGCCTTGAAGGGCACAGGGGCAGGCAGTCTTGTGGGACTGACCCCTTAACCTGTATCTCTAGGT
AGATAGCATCGGAATTGGGTTAAATTGCAGGACACCCAGCTGGTGTCATGGAATCATTTGGTAT
GGGGAAAACCCCCACCTAGGTGTCAGAAGTGTTGTTATTGTGATAGTAGTGTGAAAGTAAAGGA
GAAACCCAGGAGGACTGAAGTTTTTCCTACTATAGAGCAATATTGAATCTATCTAAGAATCTCT
TAGTCTCCTTCCCATTTCCCCTAGTACCAAACTTGAGGCAAATCCTTTTATTTCTAGTTAAAAT
TTGCATATGACAATCAGGGCTTTTCTTTATAATTATTATTTTTGGTGTTTTTGTCCTTTTAGGG
ACGCACCCGCAGCATATGGAGGTTCCCAGCCTAGGGGTCTAATCAGAGCTCAGCAACGCCAGAT
CCGAGCCATGTCTGTGATCTGCACCACAGCTCACAGCAATGCTGGATCCTTAACCCACTGAGCG
AGGCCAGGGATCAAACCCACAACCTCATGGTTCCTAGTTGGATTTGCTTCCTCTGCGCCAAGAC
GGGAACTCCAATCAGAGCTTTCCTGCTTCTCAACTACTCGTCTACCTCACTTACCTAATCTCTC
CTCGTTGTTAGTTTTACTATATTTACCAAGTTGCCAAGAAATCTGGAAACATAAATGAATACAC
ATTAATAGTTTGGTGATATTATATTTCAATACACACTAAAGTAGTAGTATCTTTTTCCAGACTT
TATGGCTACCCTATATATTAATCAAAGTACATAGCTATCATATACTACTTTCCATTAGAACCAT
TGTTTATTCTTAATTATGCAAGTAAACATAAATTTACCTCCACTAGTGATATTGTTGTCTCTTC
AGTCATTGTGGTTATCTACAGCTTGTTCTCTAGTTTCCTCAGGAAATGTTTTTATCAAGAATAT
TCTTTTTTTATGGGATATAAGAGGGGAGACATAATAGCAGTCTCCAATAGAGGGAGCCTTAGGT
TCCTCACAGGAAAGAAAATAGATCAGAAATTTGTAATCTATAGAGAAATTTTAAATAGCTTTTG
GAGTTCCCGTTGTGGCTCAGTGGAAACAAACCTGACTAATATCCATGACGATACGGGTTTGAGT
GCTGACCTCACTCAGTGGGTTAAGGCTCCGGCGTTGCCATGAGCTATGGTGCAGTTTGCAGTCG
TGGCGTGGATCTGGCATTGCTATGGCTGTGGTGTAGGCCAGCAGCTGCATCTCCAATTTGACCC
TTAGCCTGGGAACTTCCACATGCCGCACCTGTGGCCTGAAAGTAAATAAATAAATAAAAATAAA
ATAGCTTCTATATTTGCCACAGCCACATCAGATCCGAGCCACATCTGTGACCTACACCACAGCT
CACAGCAACGCCAGATCCTTAACCCACTGAGTGAGGCCAGGGATTGAACCCGAAACCTCATGGT
TCCTAGTCAGATTCGTTTCTGCTGAGCCACAAAGGGAACTCTTCTATTTCTGTTTTTGAATATG
CACACAATCTTTGGAAAACTACACACCCAAACAAAAACCTGATAATTGACAGAAGGGAGGTCAT
TACCTAATATTTAAAAGACCATCAGTTTCAGAGAAAAAAAAAAGAAAACCTTTACCTTCTCCGG
GCTCTCCACTTAAACTGACCAGTCTTCTTTTTGTTCTTCCCATTTCCTATTATACTACTAAGAC
TCTTACTAGGTTTCAAGAAAGGTACAAGCCCAGGTTACCTCAGGATGGTGACTGTCAACTAGGA
AGCACACCGTGTAGGCTGACTTGCAGAGAATTAAGAATGAAACACGGCAGAGGAAAAAAGAGAT
TGGGGGGGGATCACTTCCTGATCATGTTCTATCCTCCAGATTCTAGTGCCCTTTGAGGCCCAAC
CTATACTTCCTACTTTTGGAATCTGTTATAAATGTCCTGTGACTTTATAATAAATTTCCCCCTT
TTCTGTTTCGAGTAACCTGTATAGGTACTTCTTTTTACTGCGCAGTCTTGAGCCAATAATAATG
CTAAAATCACTGACTACTCACTATGCATCAGGGTGCCTAGTAGTAGGCCCTACTCGGCATATTA
CATATATTTAATGCTCAAAATTAAGATTATCCTTATTTTGCACCATAGGGGTACTCAGACCCAG
AAAGATCAAGTAACTTGTCCAAGTTCACACATTTAGGCAGAACCAGAATTTAATCCTGGTGCTC
TGACTCCAGCACTCAAGTTGGTAGTTGCCCTCAGTCAGGTAGTTTATGCCCTTCCATAGACACA
AAGTAAACTTGGAGTCCAATGGCAGATGATCTCAATCCAAATAAAAGATTTCCTATTGGTCTAA
TTTCAGTCATGAGAAAACTAAGGCAAATGATAAAAATAAGTATCCAGATCCTTAACCCACCAAG
CAAGGCCAGGGATCGAACCCACAACCTCATGGTTCCTAACCAGATTCGTTTCCTCTGCACCACA
ATGGGAACTCCCTGAACGTTATTTTTTTCTTTTTTCCTTTACTTTTTAGGGCTTCACTTGCAGC
ATATGGAGGTTCCCAGGCTAGGGGTCGAACTGAAGCCGCAGCTGCCAGCCTACGTCACAGCCAC
AGCAATGCTAGATCCGAGCCTTGTCTGCCACCTACACCACAGCTTGCAGCAACGCCAGATCCTT
AACCTACCGAGTGAGGCCAGGGATAGAACCCGCATCCTCATGGATACTAGTTGGGTTCTTAATC
CACTAAGCTGAAACAGAAACTCTGGAACCTTAGATTTTAAAGAGACAAATAACCTAAAACAGTC
ACTTCTCCCCCGAGAACAATGAGTTAGAGGATTCAGAAATAGACCCAAATATATTAGGGAATAT
AACAAAGGTGGCAATTCAAGTTGGTGGGGAAAAGATGGCTTATTCAATAAATGATGCCAAGATA
ACTAGTTAGGTATCTGGAGACGAACCTAAATTTAGTCACCAAAATAATTCCAACAGAACAAAAC
CAGGAGTTCCTGACATGGTGCAATAGGTTAGGAGTCTGACTGCAGTGGCTCGAGTCACTACAGA
GGCATGGGTTTGATCCCTGGCCTAGTGCAGTGGGTTAAAGGATCTGGCATAGGTTGCAGCTGCA
ACTGGATTCAATCCCTAGCCTGGGAACTTCCACGTGGCAAGTATGGCCATAAAATTTTTAAAAA
ACAATCCCCCACTAAAACCATGGGTGAATTATTTTCTAAATATTGGAAGTTATGAAAAGCCATT
CAAGGCATAAGATACACAAACACTGAGAGAAATAATAAATTTGACTACATAAAGGTTAAAAACA
TGTCCATGCCCCCCACCCCCCAAAAAGCTACAAACAAGTGAACAAAAAAAAGACCCCTACAGGA
GTTCCCGCTATGGCGCAACAGGAAGCATGATGTCTCTGCTGCACCAGGATGCGGGTTTGATCCC
TAGCCCAATACAGTGGGTTAGAAGATCTGGTGTTACTGCACTACATCGTGGGTCACAACTGTGG
CTTGGATCTGATCCCTGGCCCAGGAACTCCATGTGCCGCGGGGCAGCCAAAAAAGAAAGAAAAA
CAAAAAAAAAACCCTGACTAATGGGGGGAAAATGCTTGCAACATAATTGATAAAGGGGTAATTT
CCTTAACATATAAAGAATCAAATAGATTAATAAAAATGATCAAGAGCCCAAAAGCAAATGGCAA
AAAATTATTAAAGGCTATTATCAGGGAGGAAAAAAAAAGAAGTAAGATGTATAAACGTTAAGTG
AAGGGACATCAACGGCTTAAGGTCATACAGCTCCTGCATTCCTGTGTTGAGTAAGAACTCAAAC
CCCTGTGTCTGGCTCCAAAGTCTGTGGTATGTTACACCACACTGCCCAGTGAACACAGCTCTTG
GGGTTCCATGGTTTGTTACAGTGGTTAAAGACCCCAAAGATAAGCTGGAAGTTCTCGAGGATAA
GGTATGCTAGAAAAAAGTCAGGGCCACTAATCAGTTAATTTTCTCATATTCATTTCCTGTCTCT
CACACCTCTAAAATGAAAATGAACCTAAGTTTCAGGGGAAAAGATTGGAGTGTCAGCCAAGAAA
GTGCGTAACAAAAAGGGGATGGCAGCCCCTGCGAATTGGGAGGTAGTCCCAGAAGGTCTGCCTT
CTGCAGTTGCCAGGCAACAAAGGTAAACAGCAGAAAGTGGCAGGATCATGGCCACTAACTACAG
CGCCAACCAGGCCATCCCAAAACAGACATAAGGATGGATTTGGCCCATGGGCCACAATTTGCTG
ACCTCTGGTCTAAACCAGCACTGCAATAAAAAGATAATTATGAAAAAGCTTTCTCACCCAGGTA
TCTGCAGAACTGGTCTCTCGCCAAGCCAACAAAACAGAGGATTTCTTCCCATGAAGGCTACACT
CAGATTATCGCCAATGATCGTGGTCATCTGTTGCCTTCAGTGCCCCGCTCCAAGGCAAGTCCCT
GGGGTTCATTCATGGGCACCTGGGATATGCCTCTGAAGGTACCCCCTGCTCGAGTGACCTTGAC
CTCCCGTACAGCTGCCGGTGCAGCCTCCCTCACCAAATGGATACAGAAAAATCCCAATTTACTG
AAGGCCTCCAATGGGCTGCGTCCTGAAATCTTAGGCAAGCCCCACGATCCAGACGGCCAGAGGA
AATTTGGGAAGTCTATCATAAAGACAGTACAACAAGCTCCAAGATCAACCATAATCCCAAGCTC
CCCAGGCTCAAATCTCAATTCCCCAGATCATCCCCAAAGCTCACATCCCTCTGCAGGTCACACT
CCAGGTCCCCAAAGCCCAGCCAACTCTCCAAAGACCTCACTTGGAAGCCCGTGTATGCCTGAAC
ACTGTGCAGGTCCTAAACTAGCTGAGGTCCAAAAATGCCAACTTGGAACTCCATAAGGGACTAA
GGGACCACACTGAGAAAAGCTGTCTGGGGACTGAGTGACACCCGGTCGGGGAAATTATGGATGG
GAGTAAAGGCAAATTTGGAAAATTAACATTGTTGAGTCTTTTACTGATTTGGATTTTTCCCTCT
TGCTATGGCTGCCTCTTGTAACCCATAACTAGGAGGAGGGTTGAAGGAAAGAGTAGGGAGAAGA
AAACATTTTTACAAGGATTGAGTCAATTATACTCCAGAAATGACCAGGAGGAAATTTGAGCAAA
AGGAACATCAAATAACTAGTCCCTCACCCATCTCATTTTTCACCCTGAATATGAACTACAACTT
CAAAGTTTGAGGTACAGTCATTAGTAGAATATGTATATGCACATTTGGAGGAGGCGGGGGGTGG
GGGGGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_013852278	(Get FASTA)	NCBI Sequence Viewer
	XP_013852279	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000023960
	ENSSSCP00000023960.2
	ENSSSCP00005002642.1
	ENSSSCP00025002796.1
	ENSSSCP00035041914.1
	ENSSSCP00045040054.1
	ENSSSCP00050018080.1
	ENSSSCP00055003418.1
	ENSSSCP00065015989.1
	ENSSSCP00070042422.1

RefSeq Acc Id:	XP_013852278 ⟸ XM_013996824
- UniProtKB:	A0A480EN68 (UniProtKB/TrEMBL), A0A8D1L7G5 (UniProtKB/TrEMBL), A0A4X1VKS7 (UniProtKB/TrEMBL), A0A8D0HRR2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATNYSANQYEKAFSPRYLQNWSLAKPTKQRISSHEGYTQIIANDRGHLLPSVPRSKASPWGSF MGTWDMPLKVPPARVTLTSRTAAGAASLTKWIQKNPNLLKASNGLRPEILGKPHDPDGQRKFGK SIIKTVQQAPRSTIIPSSPGSNLNSPDHPQSSHPSAGHTPGPQSPANSPKTSLGSPCMPEHCAG PKLAEVQKCQLGTP hide sequence

RefSeq Acc Id:	XP_013852279 ⟸ XM_013996825
- UniProtKB:	A0A480EN68 (UniProtKB/TrEMBL), A0A8D1L7G5 (UniProtKB/TrEMBL), A0A4X1VKS7 (UniProtKB/TrEMBL), A0A8D0HRR2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATNYSANQYEKAFSPRYLQNWSLAKPTKQRISSHEGYTQIIANDRGHLLPSVPRSKASPWGSF MGTWDMPLKVPPARVTLTSRTAAGAASLTKWIQKNPNLLKASNGLRPEILGKPHDPDGQRKFGK SIIKTVQQAPRSTIIPSSPGSNLNSPDHPQSSHPSAGHTPGPQSPANSPKTSLGSPCMPEHCAG PKLAEVQKCQLGTP hide sequence

RefSeq Acc Id:

ENSSSCP00000023960 ⟸ ENSSSCT00000028177

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000023957	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00005002949	UniProtKB/TrEMBL
	ENSSSCG00025005007	UniProtKB/TrEMBL
	ENSSSCG00035073169	UniProtKB/TrEMBL
	ENSSSCG00045033524	UniProtKB/TrEMBL
	ENSSSCG00050032666	UniProtKB/TrEMBL
	ENSSSCG00055002350	UniProtKB/TrEMBL
	ENSSSCG00065028137	UniProtKB/TrEMBL
	ENSSSCG00070025115	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000028177	ENTREZGENE
	ENSSSCT00000028177.4	UniProtKB/TrEMBL
	ENSSSCT00005004512.1	UniProtKB/TrEMBL
	ENSSSCT00025006765.1	UniProtKB/TrEMBL
	ENSSSCT00035099089.1	UniProtKB/TrEMBL
	ENSSSCT00045057302.1	UniProtKB/TrEMBL
	ENSSSCT00050043842.1	UniProtKB/TrEMBL
	ENSSSCT00055004439.1	UniProtKB/TrEMBL
	ENSSSCT00065037926.1	UniProtKB/TrEMBL
	ENSSSCT00070050205.1	UniProtKB/TrEMBL
InterPro	Fltp	UniProtKB/TrEMBL
KEGG Report	ssc:100621973	UniProtKB/TrEMBL
NCBI Gene	CFAP126	ENTREZGENE
PANTHER	PROTEIN FLATTOP	UniProtKB/TrEMBL
	PTHR34639	UniProtKB/TrEMBL
UniProt	A0A480EN68	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1VKS7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0HRR2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1L7G5	ENTREZGENE, UniProtKB/TrEMBL
	I3LIQ4_PIG	UniProtKB/TrEMBL
VGNC ID	VGNC:86594	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar