Aph1b (aph-1B gamma-secretase subunit) - Rat Genome Database

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Gene: Aph1b (aph-1B gamma-secretase subunit) Rattus norvegicus
Analyze
Symbol: Aph1b
Name: aph-1B gamma-secretase subunit (Ensembl:aph-1 homolog B, gamma secretase subunit)
RGD ID: 1562468
Description: Predicted to enable endopeptidase activator activity and protein-macromolecule adaptor activity. Involved in locomotory behavior. Predicted to be located in membrane. Predicted to be part of gamma-secretase complex. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in coronary artery disease. Orthologous to human APH1B (aph-1 homolog B, gamma-secretase subunit); PARTICIPATES IN Notch signaling pathway; syndecan signaling pathway; Alzheimer's disease pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; 4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: anterior pharynx defective 1 homolog B; anterior pharynx defective 1 homolog B (C. elegans); anterior pharynx defective 1b homolog; anterior pharynx defective 1b homolog (C. elegans); aph-1 homolog B, gamma secretase subunit; APH-1B'; APH1B gamma secretase subunit; gamma-secretase subunit APH-1B; gamma-secretase subunit APH-1B-like; LOC108348064; presenilin stabilization factor-like; similar to anterior pharynx defective 1b homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8876,310,380 - 76,334,146 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl876,310,380 - 76,331,428 (-)EnsemblGRCr8
mRatBN7.2867,429,198 - 67,454,735 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl867,429,198 - 67,450,243 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx872,962,644 - 72,984,343 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0871,235,477 - 71,257,176 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0869,070,986 - 69,092,038 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0872,508,008 - 72,598,921 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl872,476,425 - 72,629,265 (-)Ensemblrn6Rnor6.0
Rnor_5.0876,942,439 - 76,963,484 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4871,122,681 - 71,143,726 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera874,251,130 - 74,264,693 (+)NCBICelera
Cytogenetic Map8q24NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (EXP)
2-palmitoylglycerol  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (EXP)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
acrylamide  (EXP)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
amphetamine  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
benzo[a]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
clofibric acid  (EXP)
diallyl trisulfide  (ISO)
dicrotophos  (ISO)
dorsomorphin  (ISO)
entinostat  (ISO)
enzalutamide  (ISO)
folic acid  (ISO)
furan  (EXP)
GSK-J4  (ISO)
hydrogen peroxide  (ISO)
indole-3-methanol  (EXP)
L-methionine  (ISO)
lead diacetate  (EXP)
leflunomide  (ISO)
linalool  (EXP)
methylparaben  (ISO)
N-acetyl-L-cysteine  (EXP)
N-nitrosodiethylamine  (EXP,ISO)
okadaic acid  (ISO)
perfluorooctanoic acid  (EXP)
phenformin  (EXP)
phenobarbital  (ISO)
phlorizin  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
testosterone  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
toluene  (EXP)
trichloroethene  (EXP)
triphenyl phosphate  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
gamma-secretase complex  (IBA,IEA,ISO)
membrane  (IEA,ISO)
synapse  (IEA)
transport vesicle  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Gene dosage effect on gamma-secretase component Aph-1b in a rat model for neurodevelopmental disorders. Coolen MW, etal., Neuron. 2005 Feb 17;45(4):497-503. doi: 10.1016/j.neuron.2004.12.054.
2. Cell and molecular biology of Notch. Fiuza UM and Arias AM, J Endocrinol. 2007 Sep;194(3):459-74.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. [Effect of ßsheet blocking peptide H102 on APP metabolic enzymes in hippocampal brain of double transgenic AD mice]. Jiang F, etal., Zhongguo Ying Yong Sheng Li Xue Za Zhi. 2017 Apr 8;33(4):299-303. doi: 10.12047/j.cjap.5516.2017.073.
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
7. GOA pipeline RGD automated data pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive gene review and curation RGD comprehensive gene curation
10. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
11. Correlation between HIV-1 seropositivity and prevalence of a gamma-secretase polymorphism in two distinct ethnic populations. van Loo KM, etal., J Med Virol. 2009 Nov;81(11):1847-51. doi: 10.1002/jmv.21601.
12. Male-specific association between a gamma-secretase polymorphism and premature coronary atherosclerosis. van Loo KM, etal., PLoS One. 2008;3(11):e3662. doi: 10.1371/journal.pone.0003662. Epub 2008 Nov 6.
Additional References at PubMed
PMID:12297508   PMID:15634781   PMID:16249316   PMID:16718279   PMID:19896980   PMID:24397211  


Genomics

Comparative Map Data
Aph1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8876,310,380 - 76,334,146 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl876,310,380 - 76,331,428 (-)EnsemblGRCr8
mRatBN7.2867,429,198 - 67,454,735 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl867,429,198 - 67,450,243 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx872,962,644 - 72,984,343 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0871,235,477 - 71,257,176 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0869,070,986 - 69,092,038 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0872,508,008 - 72,598,921 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl872,476,425 - 72,629,265 (-)Ensemblrn6Rnor6.0
Rnor_5.0876,942,439 - 76,963,484 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4871,122,681 - 71,143,726 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera874,251,130 - 74,264,693 (+)NCBICelera
Cytogenetic Map8q24NCBI
APH1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381563,277,605 - 63,309,126 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1563,276,018 - 63,309,126 (+)Ensemblhg38GRCh38
GRCh371563,569,804 - 63,601,325 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361561,356,844 - 61,385,166 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341561,356,843 - 61,385,166NCBI
Celera1540,448,497 - 40,480,071 (+)NCBICelera
Cytogenetic Map15q22.2NCBI
HuRef1540,392,589 - 40,424,164 (+)NCBIHuRef
CHM1_11563,688,803 - 63,720,382 (+)NCBICHM1_1
T2T-CHM13v2.01561,082,385 - 61,113,909 (+)NCBIT2T-CHM13v2.0
Aph1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39966,682,484 - 66,704,671 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl966,682,484 - 66,702,772 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38966,775,202 - 66,797,345 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl966,775,202 - 66,795,490 (-)Ensemblmm10GRCm38
MGSCv37966,623,294 - 66,643,230 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36966,574,631 - 66,594,567 (-)NCBIMGSCv36mm8
Celera964,009,856 - 64,029,635 (-)NCBICelera
Cytogenetic Map9CNCBI
cM Map936.12NCBI
Aph1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545012,000,424 - 12,022,071 (-)Ensembl
ChiLan1.0NW_00495545012,000,682 - 12,022,183 (-)NCBIChiLan1.0ChiLan1.0
APH1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21652,526,034 - 52,554,488 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11556,702,155 - 56,733,766 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01542,224,593 - 42,256,202 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11560,520,031 - 60,551,599 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1560,520,031 - 60,551,599 (+)EnsemblpanPan2panpan1.1
APH1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13027,852,784 - 27,887,618 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3027,855,249 - 27,887,601 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3027,772,768 - 27,806,586 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03028,025,424 - 28,059,260 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3028,025,285 - 28,058,138 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13027,962,895 - 27,996,685 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03028,024,979 - 28,058,785 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03028,268,502 - 28,298,404 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Aph1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640105,991,875 - 106,021,729 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647123,839,907 - 23,869,935 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647123,839,962 - 23,869,788 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
APH1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1108,730,298 - 108,763,401 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11108,549,297 - 108,763,279 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21119,981,006 - 119,988,547 (-)NCBISscrofa10.2Sscrofa10.2susScr3
APH1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12620,236,666 - 20,265,167 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2620,240,015 - 20,265,151 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666048121,135,804 - 121,164,327 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Aph1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247819,217,741 - 9,249,477 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247819,152,359 - 9,249,467 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Aph1b
139 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:224
Count of miRNA genes:143
Interacting mature miRNAs:164
Transcripts:ENSRNOT00000024176
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83975280384752803Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)849849908118871671Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)839106363103375781Rat
1298079Activ2Activity QTL 29.50.000001voluntary movement trait (VT:0003491)rearing measurement (CMO:0001515)85076395195763951Rat
11556286Cm81Cardiac mass QTL 810.01heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)83910625884106258Rat
70161Bp62Blood pressure QTL 622.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)85158969999045312Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)839106363103375781Rat
61464Niddm11Non-insulin dependent diabetes mellitus QTL 113.10.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)84447792689477926Rat
4889938Bss89Bone structure and strength QTL 893.8tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)85899169791341052Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)839106258103375958Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)861019838121662124Rat
2313088Bss75Bone structure and strength QTL 753.10.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)83910625891341052Rat
8662823Vetf5Vascular elastic tissue fragility QTL 51.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)863404444108404444Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)835464071107982864Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)84754141992541419Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)83910625884106258Rat
631842Inf1Infertility severity QTL 14.10.001seminal gland mass (VT:0010524)seminal vesicle wet weight (CMO:0001603)83154366176543661Rat
1331769Rf39Renal function QTL 393.871urine output (VT:0003620)timed urine volume (CMO:0000260)850763951107970527Rat
1359033Bp273Blood pressure QTL 273arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83910625884106258Rat
1358906Bp253Blood pressure QTL 25340.0004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)84961020494610204Rat
61358Bp39Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84444783789447837Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)835464071107982864Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)839106363114525825Rat
1582254Kidm31Kidney mass QTL 313kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)84924517894245178Rat
724540Uae8Urinary albumin excretion QTL 85urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)839106258103375958Rat
10402857Bp380Blood pressure QTL 3800.95arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)862848139107848139Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)835464071107982864Rat
1582243Bw66Body weight QTL 663.40.0048body mass (VT:0001259)body weight (CMO:0000012)84924517894245178Rat
5684973Bss100Bone structure and strength QTL 1004.7tibia area (VT:1000281)tibia area measurement (CMO:0001382)85899169791341052Rat
61373Mcs4Mammary carcinoma susceptibility QTL 41.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)84447504389475043Rat
1300177Cm2Cardiac mass QTL 23.65heart mass (VT:0007028)heart weight (CMO:0000017)863141536109261840Rat
2313057Bss76Bone structure and strength QTL 7630.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)83910625891341052Rat
12879878Bw183Body weight QTL 1830.001body mass (VT:0001259)body weight (CMO:0000012)862848139107848139Rat
1549908Neudeg1Neurodegradation QTL 15.50nervous system integrity trait (VT:0010566)logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)858337123103337123Rat
12879879Cm99Cardiac mass QTL 990.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)862848139107848139Rat
1331804Cm30Cardiac mass QTL 303.77443heart mass (VT:0007028)heart wet weight (CMO:0000069)862970527107970527Rat
2313067Bss77Bone structure and strength QTL 773.10.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)83910625891341052Rat
12879880Cm100Cardiac mass QTL 1000.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)862848139107848139Rat
12879881Cm101Cardiac mass QTL 1010.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)862848139107848139Rat
12879882Am8Aortic mass QTL 80.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)862848139107848139Rat
12879883Kidm65Kidney mass QTL 650.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)862848139107848139Rat
71120Niddm21Non-insulin dependent diabetes mellitus QTL 213.73blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)866992095111992095Rat
1358912Bw51Body weight QTL 512.95body mass (VT:0001259)body weight (CMO:0000012)860248093105248093Rat
2313086Bss60Bone structure and strength QTL 604.10.0001tibia length (VT:0004357)tibia length (CMO:0000450)85899169791341052Rat
2293697Bmd39Bone mineral density QTL 39femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)862848139107848139Rat
1331837Bw23Body weight QTL 234.190.00007body mass (VT:0001259)body weight (CMO:0000012)855428416107963099Rat
1331838Niddm61Non-insulin dependent diabetes mellitus QTL 613.530.0004blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)862963099107963099Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)870041301121080908Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)868690349119799881Rat
2313046Bss78Bone structure and strength QTL 783.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)83910625891341052Rat
631664Hcar3Hepatocarcinoma resistance QTL 32.90.0005liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)862982864107982864Rat
2301402Bp316Blood pressure QTL 3160.005arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)862848139107848139Rat

Markers in Region
RH141122  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera866,730,813 - 66,731,028UniSTS
Celera198,768,751 - 8,768,966UniSTS
RH 3.4 Map1855.5UniSTS
Cytogenetic Map8q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000024176   ⟹   ENSRNOP00000024176
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl876,310,380 - 76,331,428 (-)Ensembl
mRatBN7.2 Ensembl867,429,198 - 67,450,243 (-)Ensembl
Rnor_6.0 Ensembl872,608,220 - 72,629,265 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000024207   ⟹   ENSRNOP00000024207
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl872,476,425 - 72,629,234 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000057704   ⟹   ENSRNOP00000054515
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl872,476,955 - 72,629,128 (-)Ensembl
RefSeq Acc Id: NM_001047090   ⟹   NP_001040555
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8876,310,380 - 76,331,428 (-)NCBI
mRatBN7.2867,429,198 - 67,450,243 (-)NCBI
Rnor_6.0872,508,008 - 72,598,921 (-)NCBI
Rnor_5.0876,942,439 - 76,963,484 (-)NCBI
RGSC_v3.4871,122,681 - 71,143,726 (-)RGD
Celera874,251,130 - 74,264,693 (+)RGD
Sequence:
RefSeq Acc Id: XM_039081129   ⟹   XP_038937057
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8876,322,265 - 76,334,146 (-)NCBI
mRatBN7.2867,441,942 - 67,454,735 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001040555 (Get FASTA)   NCBI Sequence Viewer  
  XP_038937057 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH98711 (Get FASTA)   NCBI Sequence Viewer  
  AAI66592 (Get FASTA)   NCBI Sequence Viewer  
  ABG66305 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000024176
  ENSRNOP00000024176.5
RefSeq Acc Id: NP_001040555   ⟸   NM_001047090
- UniProtKB: Q0PY50 (UniProtKB/TrEMBL),   D4A4J6 (UniProtKB/TrEMBL),   D3ZEJ1 (UniProtKB/TrEMBL),   Q4G070 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038937057   ⟸   XM_039081129
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000024207   ⟸   ENSRNOT00000024207
Ensembl Acc Id: ENSRNOP00000054515   ⟸   ENSRNOT00000057704
Ensembl Acc Id: ENSRNOP00000024176   ⟸   ENSRNOT00000024176

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q0PY50-F1-model_v2 AlphaFold Q0PY50 1-257 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562468 AgrOrtholog
BioCyc Gene G2FUF-30009 BioCyc
Ensembl Genes ENSRNOG00000027295 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000024176 ENTREZGENE
  ENSRNOT00000024176.7 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7321686 IMAGE-MGC_LOAD
  IMAGE:7929867 IMAGE-MGC_LOAD
InterPro Aph-1 UniProtKB/TrEMBL
KEGG Report rno:300802 UniProtKB/TrEMBL
MGC_CLONE MGC:112700 IMAGE-MGC_LOAD
  MGC:188357 IMAGE-MGC_LOAD
NCBI Gene 300802 ENTREZGENE
PANTHER Aph-1 UniProtKB/TrEMBL
Pfam Aph-1 UniProtKB/TrEMBL
PhenoGen Aph1b PhenoGen
RatGTEx ENSRNOG00000027295 RatGTEx
UniProt D3ZEJ1 ENTREZGENE
  D4A4J6 ENTREZGENE
  Q0PY50 ENTREZGENE, UniProtKB/TrEMBL
  Q4G070 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary D3ZEJ1 UniProtKB/TrEMBL
  D4A4J6 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2025-11-13 Aph1b  aph-1B gamma-secretase subunit  Aph1b  aph-1 homolog B, gamma secretase subunit  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2021-03-09 Aph1b  aph-1 homolog B, gamma secretase subunit  LOC108348064  gamma-secretase subunit APH-1B-like  Data merged from RGD:11363519 737654 PROVISIONAL
2016-08-02 LOC108348064  gamma-secretase subunit APH-1B-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2015-12-02 Aph1b  aph-1 homolog B, gamma secretase subunit  Aph1b  APH1B gamma secretase subunit  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-09-12 Aph1b  APH1B gamma secretase subunit  Aph1b  anterior pharynx defective 1 homolog B (C. elegans)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-05-24 Aph1b  anterior pharynx defective 1 homolog B (C. elegans)  LOC681486  similar to anterior pharynx defective 1b homolog  Data merged from RGD:1595348 1643240 APPROVED
2008-09-25 Aph1b  anterior pharynx defective 1 homolog B (C. elegans)  Aph1b  anterior pharynx defective 1b homolog (C. elegans)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC681486  similar to anterior pharynx defective 1b homolog      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-30 Aph1b  anterior pharynx defective 1b homolog (C. elegans)    presenilin stabilization factor-like  Name updated 1299863 APPROVED
2006-02-09 Aph1b  presenilin stabilization factor-like      Symbol and Name status set to provisional 70820 PROVISIONAL