Ctnna3 (catenin alpha 3) - Rat Genome Database

Name: Ctnna3
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Ctnna3 (catenin alpha 3) Rattus norvegicus

Analyze

Symbol:

Ctnna3

Name:

catenin alpha 3

RGD ID:

1562230

Description:

Predicted to enable beta-catenin binding activity. Predicted to be involved in bundle of His cell-Purkinje myocyte adhesion involved in cell communication; regulation of heart rate by cardiac conduction; and regulation of ventricular cardiac muscle cell action potential. Predicted to be located in adherens junction; fascia adherens; and lamellipodium. Human ortholog(s) of this gene implicated in arrhythmogenic right ventricular dysplasia 13. Orthologous to human CTNNA3 (catenin alpha 3); PARTICIPATES IN arrhythmogenic right ventricular cardiomyopathy pathway; endometrial cancer pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

AABR07044900.1; catenin (cadherin associated protein), alpha 3; catenin alpha-3; Catna3; LOC361839; MGC188744; rCG61001-like; RGD1559455; RGD1562230; similar to catenin alpha 3

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CTNNA3 (catenin alpha 3)	HGNC	Ensembl, HomoloGene
Mus musculus (house mouse):	Ctnna3 (catenin alpha 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ctnna3 (catenin alpha 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CTNNA3 (catenin alpha 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CTNNA3 (catenin alpha 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ctnna3 (catenin alpha 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CTNNA3 (catenin alpha 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CTNNA3 (catenin alpha 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ctnna3 (catenin alpha 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CTNNA3 (catenin alpha 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|OrthoFinder\|PhylomeDB)
Mus musculus (house mouse):	Ctnna3 (catenin alpha 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	alpha-Cat	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB)
Caenorhabditis elegans (roundworm):	hmp-1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	23,613,016 - 25,198,699 (-)	NCBI		GRCr8
mRatBN7.2	20	23,614,469 - 25,200,026 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	23,623,560 - 25,199,978 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	20	25,063,124 - 26,640,428 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	26,516,836 - 26,589,209 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	27,131,441 - 28,684,032 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	25,842,315 - 26,947,108 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	20	24,950,408 - 26,462,542 (-)	NCBI		Celera
Cytogenetic Map	20	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

arrhythmogenic right ventricular dysplasia 13 (ISO)

asthma (ISO)

Autosomal Dominant Intellectual Developmental Disorder 70 (ISO)

dilated cardiomyopathy (ISO)

Dilated Cardiomyopathy with Left Ventricular Noncompaction (ISO)

familial hypertrophic cardiomyopathy (ISO)

genetic disease (ISO)

long QT syndrome (ISO)

substance-related disorder (ISO)

Syncope (ISO)

urinary bladder cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1-naphthyl isothiocyanate (EXP)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4-dinitrobenzenesulfonic acid (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

aristolochic acid A (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

Brodifacoum (EXP)

CGP 52608 (ISO)

Cuprizon (EXP)

cyanates (ISO)

DDT (EXP)

dichloroacetic acid (ISO)

dimethylarsinic acid (ISO)

doxorubicin (ISO)

genistein (ISO)

glycidol (EXP)

lead diacetate (EXP)

methoxychlor (EXP)

methylarsonic acid (ISO)

N-Nitrosopyrrolidine (ISO)

nitrofen (EXP)

O-methyleugenol (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sodium fluoride (ISO)

sunitinib (ISO)

tebuconazole (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

triclosan (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

bundle of His cell-Purkinje myocyte adhesion involved in cell communication (ISO)

cell migration (IEA)

cell-cell adhesion (ISO)

regulation of heart rate by cardiac conduction (ISO)

regulation of ventricular cardiac muscle cell action potential (ISO)

Cellular Component

adherens junction (ISO)

cytoplasm (IEA)

fascia adherens (ISO)

lamellipodium (ISO)

Molecular Function

actin filament binding (IEA)

beta-catenin binding (ISO)

cadherin binding (IEA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

arrhythmogenic right ventricular cardiomyopathy pathway (IEA)

endometrial cancer pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
3.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11590244	PMID:12477932	PMID:14657280	PMID:15632090	PMID:17535849	PMID:19129494	PMID:23136403	PMID:31505169

Genomics

Comparative Map Data

Ctnna3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	23,613,016 - 25,198,699 (-)	NCBI		GRCr8
mRatBN7.2	20	23,614,469 - 25,200,026 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	23,623,560 - 25,199,978 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	20	25,063,124 - 26,640,428 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	26,516,836 - 26,589,209 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	27,131,441 - 28,684,032 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	25,842,315 - 26,947,108 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	20	24,950,408 - 26,462,542 (-)	NCBI		Celera
Cytogenetic Map	20	p11	NCBI

CTNNA3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	65,912,523 - 67,763,594 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	65,912,457 - 67,763,637 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	67,672,281 - 69,455,953 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	67,349,937 - 69,125,933 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	67,349,937 - 69,125,933	NCBI
Celera	10	60,952,569 - 62,730,826 (-)	NCBI		Celera
Cytogenetic Map	10	q21.3	NCBI
HuRef	10	61,677,649 - 63,454,766 (-)	NCBI		HuRef
CHM1_1	10	67,961,493 - 69,737,768 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	66,775,664 - 68,632,045 (-)	NCBI		T2T-CHM13v2.0

Ctnna3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	63,265,877 - 64,841,174 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	63,265,877 - 64,839,446 (+)	Ensembl		GRCm39 Ensembl
GRCm38	10	63,430,098 - 65,003,667 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	63,430,098 - 65,003,667 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	62,892,846 - 64,466,415 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	62,825,455 - 64,398,299 (+)	NCBI		MGSCv36	mm8
Celera	10	64,530,270 - 66,095,505 (+)	NCBI		Celera
Cytogenetic Map	10	B4- B5.1	NCBI
cM Map	10	32.57	NCBI

Ctnna3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955425	18,628,961 - 20,087,647 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955425	18,623,645 - 20,126,200 (-)	NCBI	ChiLan1.0	ChiLan1.0

CTNNA3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	78,066,982 - 79,827,494 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	78,072,306 - 79,832,818 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	62,388,454 - 64,177,116 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	64,712,491 - 66,460,336 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	64,712,576 - 66,442,238 (-)	Ensembl	panpan1.1		panPan2

CTNNA3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	17,364,121 - 19,035,836 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	17,372,245 - 19,017,093 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	17,591,055 - 19,164,102 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	17,635,105 - 19,300,514 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	17,640,624 - 19,300,489 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	17,507,139 - 19,184,802 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	17,734,430 - 19,402,955 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	18,082,469 - 19,749,039 (-)	NCBI		UU_Cfam_GSD_1.0

Ctnna3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	61,989,665 - 63,613,571 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936521	10,482,434 - 10,936,554 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CTNNA3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	69,195,961 - 70,938,204 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	69,195,231 - 70,974,543 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	75,079,730 - 76,379,603 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CTNNA3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	63,669,561 - 65,406,737 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666048	24,490,435 - 26,255,182 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ctnna3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	285,857 - 2,034,582 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624754	285,469 - 2,182,218 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ctnna3
10475 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	173
Count of miRNA genes:	132
Interacting mature miRNAs:	146
Transcripts:	ENSRNOT00000049437, ENSRNOT00000057950
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354642	Despr15	Despair related QTL 15		0.0027	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	20	1	24159021	Rat
1600382	Edcs3	Endometrial carcinoma susceptibility QTL3	3.5	0.003	uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	20	1	25159026	Rat
2317851	Alcrsp22	Alcohol response QTL 22	3.2	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27339237	Rat
1641893	Alcrsp7	Alcohol response QTL 7			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27339237	Rat
8694189	Bw153	Body weight QTL 153	3.13	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	20	1	29191651	Rat
9590275	Scort15	Serum corticosterone level QTL 15	3.48	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	29191651	Rat
7411650	Foco23	Food consumption QTL 23	20.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	29191651	Rat
9590109	Sffal8	Serum free fatty acids level QTL 8	5.32	0.01	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	20	1	29191651	Rat
9589155	Insul32	Insulin level QTL 32	6.38	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	1	29191651	Rat
6893685	Bw111	Body weight QTL 111	2.7	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	20	1	32578807	Rat
7411668	Foco32	Food consumption QTL 32	8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	36600972	Rat
9590252	Scort12	Serum corticosterone level QTL 12	20.46	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	36600972	Rat
2305926	Iddm37	Insulin dependent diabetes mellitus QTL 37	6		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	20	1527842	46527842	Rat
1641915	Colcr9	Colorectal carcinoma resistance QTL 9	2.97	0.0024	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	20	1530655	46530655	Rat
1598816	Memor12	Memory QTL 12	2.4		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	20	2606836	47606836	Rat
2317057	Aia27	Adjuvant induced arthritis QTL 27	2.83		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	20	2892597	26381954	Rat
4889870	Pur30	Proteinuria QTL 30	19	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	8042410	29322208	Rat
7411652	Foco24	Food consumption QTL 24		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	11757515	54435887	Rat
9590092	Insglur9	Insulin/glucose ratio QTL 9	18.38	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	20	11757515	54435887	Rat
4889610	Pancm3	Pancreatic morphology QTL 3	3.75	0.001	pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	20	17617832	47606836	Rat
2317880	Alcrsp25	Alcohol response QTL 25	2.3		response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	17697550	54435887	Rat
2303626	Vencon10	Ventilatory control QTL 10		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	20	19190721	54435887	Rat
2303578	Gluco50	Glucose level QTL 50	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	20	25106722	54435887	Rat
2303587	Bw93	Body weight QTL 93	13		body mass (VT:0001259)	body weight (CMO:0000012)	20	25106722	54435887	Rat
2300188	Bmd68	Bone mineral density QTL 68	6.4	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	20	25106722	54435887	Rat

Markers in Region

D20Rat13

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	24,030,597 - 24,030,713 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	25,499,650 - 25,499,765	NCBI	Rnor6.0
Rnor_5.0	20	27,567,584 - 27,567,699	UniSTS	Rnor5.0
Celera	20	25,363,389 - 25,363,504	UniSTS
FHH x ACI Map	20	12.4099	RGD
FHH x ACI Map	20	12.4099	UniSTS
Cytogenetic Map	20	p11-q11	UniSTS

D7Rat16

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	102,920,123 - 102,920,263 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	112,204,378 - 112,204,517	NCBI	Rnor6.0
Rnor_5.0	7	112,143,411 - 112,143,550	UniSTS	Rnor5.0
RGSC_v3.4	7	108,647,237 - 108,647,376	UniSTS	RGSC3.4
RGSC_v3.4	7	108,647,236 - 108,647,376	RGD	RGSC3.4
RGSC_v3.1	7	108,681,467 - 108,681,606	RGD
Celera	20	25,557,526 - 25,557,946	UniSTS
RH 3.4 Map	7	709.6	RGD
RH 3.4 Map	7	709.6	UniSTS
RH 2.0 Map	7	607.2	RGD
SHRSP x BN Map	7	59.07	RGD
FHH x ACI Map	7	50.06	RGD
Cytogenetic Map	20	p11-q11	UniSTS

D20Rat7

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	24,963,389 - 24,963,524 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	26,447,820 - 26,447,954	NCBI	Rnor6.0
Rnor_5.0	20	28,510,783 - 28,510,917	UniSTS	Rnor5.0
RGSC_v3.4	20	26,064,461 - 26,064,596	RGD	RGSC3.4
RGSC_v3.4	20	26,064,462 - 26,064,596	UniSTS	RGSC3.4
RGSC_v3.1	20	26,078,261 - 26,078,396	RGD
Celera	20	26,274,277 - 26,274,411	UniSTS
SHRSP x BN Map	20	21.46	UniSTS
SHRSP x BN Map	20	21.46	RGD
FHH x ACI Map	20	12.4798	RGD
Cytogenetic Map	20	p11-q11	UniSTS

D20Rat68

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	23,682,687 - 23,682,918 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	25,130,768 - 25,130,996	NCBI	Rnor6.0
Rnor_5.0	20	27,199,085 - 27,199,313	UniSTS	Rnor5.0
RGSC_v3.4	20	24,696,455 - 24,696,683	UniSTS	RGSC3.4
RGSC_v3.4	20	24,696,455 - 24,696,683	RGD	RGSC3.4
RGSC_v3.1	20	24,710,255 - 24,710,644	RGD
Celera	20	25,018,877 - 25,019,105	UniSTS
FHH x ACI Map	20	12.4099	UniSTS
FHH x ACI Map	20	12.4099	RGD
Cytogenetic Map	20	p11-q11	UniSTS

D20Got110

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	24,976,452 - 24,976,574 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	26,460,883 - 26,461,002	NCBI	Rnor6.0
Rnor_5.0	20	28,523,846 - 28,523,965	UniSTS	Rnor5.0
RGSC_v3.4	20	26,048,678 - 26,048,797	UniSTS	RGSC3.4
Celera	20	26,285,507 - 26,285,626	UniSTS
Cytogenetic Map	20	p11-q11	UniSTS

D20Got120

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	24,107,324 - 24,107,542 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	25,576,793 - 25,577,010	NCBI	Rnor6.0
Rnor_5.0	20	27,644,418 - 27,644,635	UniSTS	Rnor5.0
RGSC_v3.4	20	26,932,614 - 26,932,831	UniSTS	RGSC3.4
Celera	20	25,440,192 - 25,440,409	UniSTS
Cytogenetic Map	20	p11-q11	UniSTS

D20Got115

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	24,824,834 - 24,825,076 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	26,305,642 - 26,305,883	NCBI	Rnor6.0
Rnor_5.0	20	28,370,631 - 28,370,872	UniSTS	Rnor5.0
RGSC_v3.4	20	26,207,147 - 26,207,388	UniSTS	RGSC3.4
Celera	20	26,143,431 - 26,143,674	UniSTS
Cytogenetic Map	20	p11-q11	UniSTS

D20Got106

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	24,718,246 - 24,718,453 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	26,192,405 - 26,192,609	NCBI	Rnor6.0
Rnor_5.0	20	28,262,782 - 28,262,986	UniSTS	Rnor5.0
RGSC_v3.4	20	26,315,542 - 26,315,746	UniSTS	RGSC3.4
Celera	20	26,040,904 - 26,041,108	UniSTS
Cytogenetic Map	20	p11-q11	UniSTS

D20Got127

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	24,901,881 - 24,902,007 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	26,382,428 - 26,382,553	NCBI	Rnor6.0
Rnor_5.0	20	28,447,258 - 28,447,383	UniSTS	Rnor5.0
RGSC_v3.4	20	26,129,094 - 26,129,219	UniSTS	RGSC3.4
Celera	20	26,220,910 - 26,221,035	UniSTS
Cytogenetic Map	20	p11-q11	UniSTS

AU048277

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	20	25,825,996 - 25,826,074	NCBI	Rnor6.0
Rnor_6.0	20	25,825,996 - 25,826,100	NCBI	Rnor6.0
Rnor_5.0	20	27,896,042 - 27,896,146	UniSTS	Rnor5.0
Rnor_5.0	20	27,896,042 - 27,896,120	UniSTS	Rnor5.0
RGSC_v3.4	20	26,689,175 - 26,689,279	UniSTS	RGSC3.4
RGSC_v3.4	20	26,689,201 - 26,689,279	UniSTS	RGSC3.4
Celera	20	25,681,867 - 25,681,945	UniSTS
Celera	20	25,681,867 - 25,681,971	UniSTS
Cytogenetic Map	20	p11-q11	UniSTS

RH138113

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	23,623,750 - 23,623,910 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	25,064,630 - 25,064,789	NCBI	Rnor6.0
Rnor_5.0	20	27,132,947 - 27,133,106	UniSTS	Rnor5.0
RGSC_v3.4	20	24,636,284 - 24,636,443	UniSTS	RGSC3.4
Celera	20	24,959,852 - 24,960,011	UniSTS
Cytogenetic Map	20	p11-q11	UniSTS

RH130615

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	25,053,750 - 25,053,967 (-)	MAPPER	mRatBN7.2
mRatBN7.2	20	25,053,750 - 25,053,967 (+)	MAPPER	mRatBN7.2
mRatBN7.2	2	196,192,321 - 196,192,538 (-)	MAPPER	mRatBN7.2
mRatBN7.2	2	196,192,321 - 196,192,538 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	211,346,729 - 211,346,945	NCBI	Rnor6.0
Rnor_6.0	20	26,536,809 - 26,537,025	NCBI	Rnor6.0
Rnor_5.0	2	230,816,524 - 230,816,740	UniSTS	Rnor5.0
Rnor_5.0	20	28,600,185 - 28,600,401	UniSTS	Rnor5.0
RGSC_v3.4	2	204,123,731 - 204,123,947	UniSTS	RGSC3.4
RGSC_v3.4	20	25,957,978 - 25,958,194	UniSTS	RGSC3.4
Celera	20	26,355,641 - 26,355,857	UniSTS
Celera	2	188,838,212 - 188,838,428	UniSTS
RH 3.4 Map	17	356.3	UniSTS
Cytogenetic Map	2	q34	UniSTS
Cytogenetic Map	20	p11-q11	UniSTS

RH144032

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	24,690,125 - 24,690,236 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	26,164,113 - 26,164,223	NCBI	Rnor6.0
Rnor_5.0	20	28,234,258 - 28,234,368	UniSTS	Rnor5.0
RGSC_v3.4	20	26,343,330 - 26,343,440	UniSTS	RGSC3.4
Celera	20	26,013,623 - 26,013,733	UniSTS
Cytogenetic Map	20	p11-q11	UniSTS

AU047967

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	25,039,866 - 25,040,155 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	26,522,625 - 26,522,913	NCBI	Rnor6.0
Rnor_5.0	20	28,586,001 - 28,586,289	UniSTS	Rnor5.0
RGSC_v3.4	20	25,972,443 - 25,972,731	UniSTS	RGSC3.4
Celera	20	26,340,187 - 26,340,453	UniSTS
Cytogenetic Map	20	p11-q11	UniSTS

RH139003

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	196,193,218 - 196,193,345 (+)	MAPPER	mRatBN7.2
mRatBN7.2	20	25,052,943 - 25,053,070 (-)	MAPPER	mRatBN7.2
mRatBN7.2	20	25,052,943 - 25,053,070 (+)	MAPPER	mRatBN7.2
mRatBN7.2	2	196,193,218 - 196,193,345 (-)	MAPPER	mRatBN7.2
Rnor_6.0	2	211,347,626 - 211,347,752	NCBI	Rnor6.0
Rnor_6.0	20	26,536,002 - 26,536,128	NCBI	Rnor6.0
Rnor_5.0	2	230,817,421 - 230,817,547	UniSTS	Rnor5.0
Rnor_5.0	20	28,599,378 - 28,599,504	UniSTS	Rnor5.0
RGSC_v3.4	20	25,958,875 - 25,959,001	UniSTS	RGSC3.4
RGSC_v3.4	2	204,124,628 - 204,124,754	UniSTS	RGSC3.4
Celera	20	26,354,834 - 26,354,960	UniSTS
RH 3.4 Map	2	1395.3	UniSTS
Cytogenetic Map	2	q34	UniSTS
Cytogenetic Map	20	p11-q11	UniSTS

RH140435

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	24,693,124 - 24,693,255 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	26,167,112 - 26,167,242	NCBI	Rnor6.0
Rnor_5.0	20	28,237,257 - 28,237,387	UniSTS	Rnor5.0
RGSC_v3.4	20	26,340,311 - 26,340,441	UniSTS	RGSC3.4
Celera	20	26,016,622 - 26,016,752	UniSTS
Cytogenetic Map	20	p11-q11	UniSTS

AI013181

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	196,193,979 - 196,194,127 (-)	MAPPER	mRatBN7.2
mRatBN7.2	2	196,193,979 - 196,194,127 (+)	MAPPER	mRatBN7.2
mRatBN7.2	20	25,052,161 - 25,052,309 (-)	MAPPER	mRatBN7.2
mRatBN7.2	20	25,052,161 - 25,052,309 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	26,535,220 - 26,535,367	NCBI	Rnor6.0
Rnor_6.0	2	211,348,387 - 211,348,534	NCBI	Rnor6.0
Rnor_5.0	2	230,818,182 - 230,818,329	UniSTS	Rnor5.0
Rnor_5.0	20	28,598,596 - 28,598,743	UniSTS	Rnor5.0
RGSC_v3.4	2	204,125,389 - 204,125,536	UniSTS	RGSC3.4
RGSC_v3.4	20	25,959,636 - 25,959,783	UniSTS	RGSC3.4
Celera	20	26,354,052 - 26,354,199	UniSTS
Celera	2	188,839,452 - 188,839,599	UniSTS
RH 3.4 Map	2	1395.8	UniSTS
Cytogenetic Map	2	q34	UniSTS
Cytogenetic Map	20	p11-q11	UniSTS

BM390539

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	196,194,358 - 196,194,518 (-)	MAPPER	mRatBN7.2
mRatBN7.2	2	196,194,358 - 196,194,518 (+)	MAPPER	mRatBN7.2
mRatBN7.2	20	25,051,770 - 25,051,930 (-)	MAPPER	mRatBN7.2
mRatBN7.2	20	25,051,770 - 25,051,930 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	26,534,829 - 26,534,988	NCBI	Rnor6.0
Rnor_6.0	2	211,348,766 - 211,348,925	NCBI	Rnor6.0
Rnor_5.0	2	230,818,561 - 230,818,720	UniSTS	Rnor5.0
Rnor_5.0	20	28,598,205 - 28,598,364	UniSTS	Rnor5.0
RGSC_v3.4	2	204,125,768 - 204,125,927	UniSTS	RGSC3.4
RGSC_v3.4	20	25,960,015 - 25,960,174	UniSTS	RGSC3.4
Celera	20	26,353,661 - 26,353,820	UniSTS
Celera	2	188,839,831 - 188,839,990	UniSTS
RH 3.4 Map	2	1409.0	UniSTS
Cytogenetic Map	2	q34	UniSTS
Cytogenetic Map	20	p11-q11	UniSTS

AU049904

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	24,556,622 - 24,556,810 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	26,031,411 - 26,031,598	NCBI	Rnor6.0
Rnor_5.0	20	28,101,556 - 28,101,743	UniSTS	Rnor5.0
RGSC_v3.4	20	26,477,670 - 26,477,857	UniSTS	RGSC3.4
Celera	20	25,881,098 - 25,881,285	UniSTS
Cytogenetic Map	20	p11-q11	UniSTS
Cytogenetic Map	20	p11	UniSTS

UniSTS:485602

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	24,385,485 - 24,385,544 (+)	MAPPER	mRatBN7.2
mRatBN7.2	3	54,309,254 - 54,309,840 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	55,785,073 - 55,785,657	NCBI	Rnor6.0
Rnor_6.0	20	25,862,227 - 25,862,285	NCBI	Rnor6.0
Rnor_5.0	3	62,397,014 - 62,397,599	UniSTS	Rnor5.0
Rnor_5.0	20	27,932,273 - 27,932,331	UniSTS	Rnor5.0
RGSC_v3.4	3	51,686,764 - 51,687,349	UniSTS	RGSC3.4
Celera	3	53,870,165 - 53,870,750	UniSTS
Celera	20	25,718,227 - 25,718,285	UniSTS
Cytogenetic Map	20	p11-q11	UniSTS
Cytogenetic Map	3	q21	UniSTS

RH124829

Rat Assembly	Chr	Position (strand)	Source
Celera	20	25,487,230 - 25,487,363	UniSTS
Celera	1	68,091,643 - 68,091,781	UniSTS
Cytogenetic Map	7	q34	UniSTS
Cytogenetic Map	20	p11-q11	UniSTS
Cytogenetic Map	1	q12	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	17	27	11	19	11	8	10	14	15	15	11	8
Low		26	30	30		30		1	60	20	26
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001426985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772942	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772944	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008774945	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008774947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008774948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601852	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601853	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099277	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099279	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099280	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279290	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279291	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279292	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279293	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010060727	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC166848	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000049437 ⟹ ENSRNOP00000047382

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	25,034,080 - 25,108,461 (-)	Ensembl
Rnor_6.0 Ensembl	20	26,516,836 - 26,589,209 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000057950 ⟹ ENSRNOP00000054759

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	23,623,560 - 24,805,292 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000084660 ⟹ ENSRNOP00000070169

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	23,623,560 - 25,199,978 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000099024 ⟹ ENSRNOP00000078455

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	23,623,560 - 25,159,891 (-)	Ensembl

RefSeq Acc Id:

NM_001426985 ⟹ NP_001413914

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	23,613,016 - 25,137,998 (-)	NCBI

RefSeq Acc Id:

XM_008772942 ⟹ XP_008771164

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	23,620,942 - 24,437,790 (-)	NCBI
mRatBN7.2	20	23,614,469 - 24,439,115 (-)	NCBI
Rnor_6.0	20	25,120,535 - 25,916,377 (-)	NCBI

Sequence:

show sequence

CATTACAATTCATAAAAGTAGCCAAATCATAGTTATGAAGTAGCAATTAAATAATTTTGTGATG
GAGGGGTTCGTTGCATTGCATTAAAGGGTTCAGCATTAGGAAGGCTGAGCACTACTGCGTTAAA
GTGTACCAACCTAGCAAGAAGAATGCATGATGCAAGAACGAAATTTAAAATCATATTAATTCAT
TGGTCAATTGGCTGCAAGATTTAGTAATATTGTTTTTAGCATTTGACATCTTGTTGGTATGATT
ACTTTTGTTATTGAAAAGTCTTGCATAACTTGAACAGCCAACCAGACTCCCATAAACCTTAACA
AAACAATTATGTTGTTTGGCCTTTTTGCCTCCTGAATGAAATGTTCATTATAAATGCATCTCGG
CTTGAAGGTATTGAAATGTGTAATGCTCAAAATAAATAAAGAAGAACAGATGGCTGGACCTTAA
AGATCAAATTAGCTTTGTATCCATCTGGAATTTGGAGATGGCTTCATTATTTCTTTCTAATTCG
TGCAGACCTTCGTGAATTCTCTGGTGGAGGATTCTGTGCACAGTCGTGCAATTTAAATATCTTA
AGGTGATAATAAAATATGATTTAGTTATGAAATAGAATCTGAGAATAATTCTGAGGTGCTCTAA
CACTACCAGTGTCGTTATAGCTACATTTGGTGCTTTTCCAGAATTAATATTGCAGCCCATATAC
TCCGCAAGGACACACCAAGAAAAACCTACTTCATGTCCGAGGTGTTCCAACATATCTACCATTC
TGAGAGGCTCAGGCTTCAAGTACATCTTTAATTGGAAAGACGGAAAGGAGTAATACCCTGAATA
CTGCCATAGTCAACATGAGCAAGAAGACAAGAGACCTCCGCAGACAGCTCCGCAAAGCTATTAT
AGATCACATATCAGATTCTTTCTTGGACACAACAGTTCCACTCCTGGTCCTCATTGAAGCTGCT
AAGAATGGCCAAGTGAAGGAAATCAAAGATTATGCCTCCATATTTCATGAGCACACGGGCAGGC
TCATGGAGGTGGCGAACCTTGCTTGTTCCATGTCAACCAATGAAGATGGGATTAAAATCGTCCG
AATAGCAGCCAATCACCTGGAGACCCTGTGTCCACAGATCATAAATGCTGCACTTGCTTTGGCA
TCAAGACCCAAGAGCCAAGTGGTCAAAAACACCATGGAAATGTACAAACGCACCTGGGAGCATT
ACATCCATGTCCTCACTGAAGCTGTGGATGACATCACCAGCATCGATGACTTCCTGGCTGTATC
TGAAAGCCACATCCTGGAAGATGTCAACAGATGCATTATAGCCTTGAGGGATCAGGATGCTGAC
AATTTAGACCGAGCTGCAGGTGCCATCAGAGGACGGGCTGCAAGAGTAGCTCACATCGTCGCGG
GTGAAATGGACAGTTATGAACCTGGTGCTTACACCGAAGGCGTGATGAGAAATGTCAACCTCCT
TACAAGCATTGTGATCCCAGAGTTCGTGACACAAGTGAATGTTGCCTTGGATGCCTTAAGCAAG
AATGCACTAACTGCGCTCGATGACAATCAGTTTGTGGACATCTCAAAGAAGATCTATGACACAA
TCCATGATATCAGGTGTTCAGTCATGATCATTCGGACTCCAGAGGAACTAGAGGATGTTTCTGA
CCTTGAAGATGACCATGAGGTCCGTAGCCACACCAGCACTCAGACAGAAGGGAAAACTGATCGG
GCCAAGATGACTCAACTGCCTGAGGCAGAAAAGGAAAAGATTGCAGAGCAAGTAGCTGACTTCA
AGAAGGTGAAGAGCAAGCTGGACGCTGAGATTGAGATATGGGACGACACAAGCAATGATATCAT
CGTGCTTGCCAAGAAGATGTGCATGATCATGATGGAGATGACTGACTTCACCAGGGGCAAAGGA
CCACTAAAGCATACCACTGATGTAATCTATGCAGCCAAAATGATATCCGAGTCCGGATCAAGGA
TGGATGTTCTTGCTCGGCAGATTGCTAACCAGTGTCCAGATCCACCCTGCAAACAAGACTTGCT
GGCTTACCTGGAACAGATTAAATTCTACTCCCACCAGCTGAAAATCTGCAGTCAAGTTAAAGCA
GAGATCCAAAACCTGGGGGGAGAGCTCATCGTGTCAGCTGTGAGTACTGCCTGTCACTTCCATA
GTTTCACACAGAAGACACTAGAAACAGAGCAACCACGGTGCAGCTCAGCATTTCTCTCAGATGA
ATTTGACACAGGACAAACTCCATCACAGTTAGTACAAACTACATGTAATTAAATAAGGAAGGAC
ACT

hide sequence

RefSeq Acc Id:

XM_008772944 ⟹ XP_008771166

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	23,620,942 - 25,158,546 (-)	NCBI
mRatBN7.2	20	23,623,820 - 25,159,895 (-)	NCBI
Rnor_6.0	20	25,120,535 - 26,640,428 (-)	NCBI

Sequence:

show sequence

AAGTTGTCAGTGAGGTCAGCGTAGAGCCCAGGATTAGATACCACCCACCCCTTGCTTGTAACCT
CCCCTTTCTTTCTTATCCTGGGTGAGTGGCTAAAGTGACTACCCCACTCTCAGTCTCTTTTCTC
CCACCTTTCGAGCTCTGCTCAGCAAACTCCCTCCAAAAGCCGAACTCAAAGCACATTTACTTTA
CAGGAAGCATCAGAAAGGCAACATGTCAGCAGAAACACCAATAACCCTGCAGATGGACATGCAG
GATCTGCAGATCCAAACGTTCACTGTGGAGAAGCTGCTGGAGCCTCTGATAATCCAGGTTACTA
CCCTTGTGAATTGTCCGCAGAATCCGTCCAACAGGAAGAAAGGACGTTCAAAGAGAGCCAGAGT
TCTCCTAGCTTCTGTGGAGGAAGCAACTTGGAATTTGTTAGACAAGGGGGAGATGATCGCTAAG
GAAGCCACGGTTTTAAAGGAAGATCTCGAAGCTGCACTCCAGGAAGTCCGAAAAGAGAGCAAAG
CTCTGAAGGGATCAGCTGAGAGATTTACGGACGACCCCTGTTACCTCCCCAAAAGGGAGGCTGT
GGTTCAAGCCGCCCGCGCCCTGTTGGCAGCAGTCACAAGACTCCTTATCCTTGCAGACATGACT
GATGTCATGTGCCTCTTGCAGCATGTGTCATCTTTCCAAAGAACATTCAAGTCTCTTAAAAATG
TTTCCAACAAATCTGACCTCCAGAAAACCTACCAGAAGCTTGGGAAGGAGCTGGAAAGGCTGGA
TCGCTTCGCCTTCAAACGGCAGCAGGACTTGAAATCTCCAAGCCAGAGGGATGAAATCGCAGGG
GCCCGGGCCACCTTGAAGGAGAACTCCCCGCTCCTGCATTCGATTTGTTCTGCCTGTTTGGAAC
ATTCCGATGTTGCTTCTCTCAAAGCCAGTAAGGACACCGTCTGCGAAGAGATCCAGAATGCTCT
TGATGTAATTTCAAATGCTTCCCAAGGCATCCAGAATGTGCCAGCATCTCTTGAACCGCAGGCA
GCAACACTGGGAAGTGCTCTTGATGAGCTGGAGAATTTAATTGTCCTGAACCCACTCACAGTGA
CAGAGGAAGACTTAAGACCACCACTAGAGAAACGCCTAGAAGCCATCATCAGTGGGGCTGCACT
GTTGGCTGACTCTTCCTGTACCAGGGACCTCCACCGGGAACGGATCATCGCTGAGTGCAATGCC
ATCCGCCAGGCTCTCCAGGACCTGCTGTCGGAGTACATGAGTAATATTGGAAAGACGGAAAGGA
GTAATACCCTGAATACTGCCATAGTCAACATGAGCAAGAAGACAAGAGACCTCCGCAGACAGCT
CCGCAAAGCTATTATAGATCACATATCAGATTCTTTCTTGGACACAACAGTTCCACTCCTGGTC
CTCATTGAAGCTGCTAAGAATGGCCAAGTGAAGGAAATCAAAGATTATGCCTCCATATTTCATG
AGCACACGGGCAGGCTCATGGAGGTGGCGAACCTTGCTTGTTCCATGTCAACCAATGAAGATGG
GATTAAAATCGTCCGAATAGCAGCCAATCACCTGGAGACCCTGTGTCCACAGATCATAAATGCT
GCACTTGCTTTGGCATCAAGACCCAAGAGCCAAGTGGTCAAAAACACCATGGAAATGTACAAAC
GCACCTGGGAGCATTACATCCATGTCCTCACTGAAGCTGTGGATGACATCACCAGCATCGATGA
CTTCCTGGCTGTATCTGAAAGCCACATCCTGGAAGATGTCAACAGATGCATTATAGCCTTGAGG
GATCAGGATGCTGACAATTTAGACCGAGCTGCAGGTGCCATCAGAGGACGGGCTGCAAGAGTAG
CTCACATCGTCGCGGGTGAAATGGACAGTTATGAACCTGGTGCTTACACCGAAGGCGTGATGAG
AAATGTCAACCTCCTTACAAGCATTGTGATCCCAGAGTTCGTGACACAAGTGAATGTTGCCTTG
GATGCCTTAAGCAAGAATGCACTAACTGCGCTCGATGACAATCAGTTTGTGGACATCTCAAAGA
AGATCTATGACACAATCCATGATATCAGGTGTTCAGTCATGATCATTCGGACTCCAGAGGAACT
AGAGGATGTTTCTGACCTTGAAGATGACCATGAGGTCCGTAGCCACACCAGCACTCAGACAGAA
GGGAAAACTGATCGGGCCAAGATGACTCAACTGCCTGAGGCAGAAAAGGAAAAGATTGCAGAGC
AAGTAGCTGACTTCAAGAAGGTGAAGAGCAAGCTGGACGCTGAGATTGAGATATGGGACGACAC
AAGCAATGATATCATCGTGCTTGCCAAGAAGATGTGCATGATCATGATGGAGATGACTGACTTC
ACCAGGGGCAAAGGACCACTAAAGCATACCACTGATGTAATCTATGCAGCCAAAATGATATCCG
AGTCCGGATCAAGGATGGATGTTCTTGCTCGGCAGATTGCTAACCAGTGTCCAGATCCACCCTG
CAAACAAGACTTGCTGGCTTACCTGGAACAGATTAAATTCTACTCCCACCAGCTGAAAATCTGC
AGTCAAGTTAAAGCAGAGATCCAAAACCTGGGGGGAGAGCTCATCGTGTCAGCTGTGAGTACTG
CCTGTCACTTCCATAGTTTCACACAGAAGACACTAGAAACAGAGCAACCACGGTGCAGCTCAGC
ATTTCTCTCAGATGAATTTGACACAGGACAAACTCCATCACAGTTAGTACAAACTACATGTAAT
TAAATAAGGAAGGACACT

hide sequence

RefSeq Acc Id:

XM_017601852 ⟹ XP_017457341

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	23,620,942 - 24,804,372 (-)	NCBI
mRatBN7.2	20	23,623,820 - 24,805,730 (-)	NCBI
Rnor_6.0	20	25,120,535 - 26,286,540 (-)	NCBI

Sequence:

show sequence

AGAGAGAGCCAAGAGTGTGACTAAATATCTCAGTACAAGTAAGCAGACACAGATGCTCAGTTCC
TATGGAGGAGTCTGGAGAACTTTTATCATTAATCAGTCTCAATGACCTTCCTGGCTCTTCCAAT
GAATTGAAGAACTGCAAGATTTCCTATCAGTGTGCTTTAACACTCCTCTGCTTAAGAAGCCGTT
ATGTTGGATTCTAGGGAAGACTTTATTTTACATAGACCACCATCTAAAGTGTAGGATCCATTTA
CTACACAGTACTTATTATTGGCACCATTCTATGTGCTTGGGAATACATCTGGTCAGTGTCTTTC
TCAAGGGTTTAATTTTAGCAAGAACCCATAGGCAAAAGCCGTTATACATAAGCAACTAGCATAG
CGTATCATAAAAGGGTAAGGTAAGTTCAAAGATATGAGGAGTTTAAGTCAGGATCAGATGGAGA
TCTAGAACACAGGCTCAAGCTACTTACCCTGTGTTTGTGACAGCATAGAAGCCAGGAACCTGGT
GGAGTCATCAAGGGGGAAAGTTCACAGCTCAGGTAAAGAGCCAATGGGATCCAGCTAGACCAGC
CTGTGCCAGTTCTTCCTCTGAACAACTGGGACTCTTTGCAAGGCTTTTTAACACACTGAGACTT
ATGTCTTAAAGGAATGATGCTAGCACCACAGGAGCACAAACTAGATGCAAATAAGAATTTAATT
GTCCTGAACCCACTCACAGTGACAGAGGAAGACTTAAGACCACCACTAGAGAAACGCCTAGAAG
CCATCATCAGTGGGGCTGCACTGTTGGCTGACTCTTCCTGTACCAGGGACCTCCACCGGGAACG
GATCATCGCTGAGTGCAATGCCATCCGCCAGGCTCTCCAGGACCTGCTGTCGGAGTACATGAGT
AATATTGGAAAGACGGAAAGGAGTAATACCCTGAATACTGCCATAGTCAACATGAGCAAGAAGA
CAAGAGACCTCCGCAGACAGCTCCGCAAAGCTATTATAGATCACATATCAGATTCTTTCTTGGA
CACAACAGTTCCACTCCTGGTCCTCATTGAAGCTGCTAAGAATGGCCAAGTGAAGGAAATCAAA
GATTATGCCTCCATATTTCATGAGCACACGGGCAGGCTCATGGAGGTGGCGAACCTTGCTTGTT
CCATGTCAACCAATGAAGATGGGATTAAAATCGTCCGAATAGCAGCCAATCACCTGGAGACCCT
GTGTCCACAGATCATAAATGCTGCACTTGCTTTGGCATCAAGACCCAAGAGCCAAGTGGTCAAA
AACACCATGGAAATGTACAAACGCACCTGGGAGCATTACATCCATGTCCTCACTGAAGCTGTGG
ATGACATCACCAGCATCGATGACTTCCTGGCTGTATCTGAAAGCCACATCCTGGAAGATGTCAA
CAGATGCATTATAGCCTTGAGGGATCAGGATGCTGACAATTTAGACCGAGCTGCAGGTGCCATC
AGAGGACGGGCTGCAAGAGTAGCTCACATCGTCGCGGGTGAAATGGACAGTTATGAACCTGGTG
CTTACACCGAAGGCGTGATGAGAAATGTCAACCTCCTTACAAGCATTGTGATCCCAGAGTTCGT
GACACAAGTGAATGTTGCCTTGGATGCCTTAAGCAAGAATGCACTAACTGCGCTCGATGACAAT
CAGTTTGTGGACATCTCAAAGAAGATCTATGACACAATCCATGATATCAGGTGTTCAGTCATGA
TCATTCGGACTCCAGAGGAACTAGAGGATGTTTCTGACCTTGAAGATGACCATGAGGTCCGTAG
CCACACCAGCACTCAGACAGAAGGGAAAACTGATCGGGCCAAGATGACTCAACTGCCTGAGGCA
GAAAAGGAAAAGATTGCAGAGCAAGTAGCTGACTTCAAGAAGGTGAAGAGCAAGCTGGACGCTG
AGATTGAGATATGGGACGACACAAGCAATGATATCATCGTGCTTGCCAAGAAGATGTGCATGAT
CATGATGGAGATGACTGACTTCACCAGGGGCAAAGGACCACTAAAGCATACCACTGATGTAATC
TATGCAGCCAAAATGATATCCGAGTCCGGATCAAGGATGGATGTTCTTGCTCGGCAGATTGCTA
ACCAGTGTCCAGATCCACCCTGCAAACAAGACTTGCTGGCTTACCTGGAACAGATTAAATTCTA
CTCCCACCAGCTGAAAATCTGCAGTCAAGTTAAAGCAGAGATCCAAAACCTGGGGGGAGAGCTC
ATCGTGTCAGCTGTGAGTACTGCCTGTCACTTCCATAGTTTCACACAGAAGACACTAGAAACAG
AGCAACCACGGTGCAGCTCAGCATTTCTCTCAGATGAATTTGACACAGGACAAACTCCATCACA
GTTAGTACAAACTACATGTAATTAAATAAGGAAGGACACT

hide sequence

RefSeq Acc Id:

XM_039099277 ⟹ XP_038955205

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	23,620,942 - 25,198,688 (-)	NCBI
mRatBN7.2	20	23,614,469 - 25,200,018 (-)	NCBI

RefSeq Acc Id:

XM_039099279 ⟹ XP_038955207

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	23,620,942 - 24,786,805 (-)	NCBI
mRatBN7.2	20	23,623,820 - 24,788,003 (-)	NCBI

RefSeq Acc Id:

XM_039099280 ⟹ XP_038955208

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	24,257,251 - 25,198,697 (-)	NCBI
mRatBN7.2	20	24,258,528 - 25,200,026 (-)	NCBI

RefSeq Acc Id:

XM_063279290 ⟹ XP_063135360

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	24,691,027 - 25,198,699 (-)	NCBI

RefSeq Acc Id:

XM_063279291 ⟹ XP_063135361

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	24,704,684 - 25,198,698 (-)	NCBI

RefSeq Acc Id:

XM_063279292 ⟹ XP_063135362

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	24,437,717 - 25,198,698 (-)	NCBI

RefSeq Acc Id:

XM_063279293 ⟹ XP_063135363

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	24,704,684 - 25,138,053 (-)	NCBI

RefSeq Acc Id:

XR_010060727

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	24,348,306 - 25,198,698 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001413914	(Get FASTA)	NCBI Sequence Viewer
	XP_008771164	(Get FASTA)	NCBI Sequence Viewer
	XP_008771166	(Get FASTA)	NCBI Sequence Viewer
	XP_017457341	(Get FASTA)	NCBI Sequence Viewer
	XP_038955205	(Get FASTA)	NCBI Sequence Viewer
	XP_038955207	(Get FASTA)	NCBI Sequence Viewer
	XP_038955208	(Get FASTA)	NCBI Sequence Viewer
	XP_063135360	(Get FASTA)	NCBI Sequence Viewer
	XP_063135361	(Get FASTA)	NCBI Sequence Viewer
	XP_063135362	(Get FASTA)	NCBI Sequence Viewer
	XP_063135363	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI66848	(Get FASTA)	NCBI Sequence Viewer
	EDL97347	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000047382.3
	ENSRNOP00000054759
	ENSRNOP00000054759.5
	ENSRNOP00000070169
	ENSRNOP00000070169.2
	ENSRNOP00000078455
	ENSRNOP00000078455.1

RefSeq Acc Id:	XP_008771166 ⟸ XM_008772944
- Peptide Label:	isoform X2
- UniProtKB:	A6JKY1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSAETPITLQMDMQDLQIQTFTVEKLLEPLIIQVTTLVNCPQNPSNRKKGRSKRARVLLASVEE ATWNLLDKGEMIAKEATVLKEDLEAALQEVRKESKALKGSAERFTDDPCYLPKREAVVQAARAL LAAVTRLLILADMTDVMCLLQHVSSFQRTFKSLKNVSNKSDLQKTYQKLGKELERLDRFAFKRQ QDLKSPSQRDEIAGARATLKENSPLLHSICSACLEHSDVASLKASKDTVCEEIQNALDVISNAS QGIQNVPASLEPQAATLGSALDELENLIVLNPLTVTEEDLRPPLEKRLEAIISGAALLADSSCT RDLHRERIIAECNAIRQALQDLLSEYMSNIGKTERSNTLNTAIVNMSKKTRDLRRQLRKAIIDH ISDSFLDTTVPLLVLIEAAKNGQVKEIKDYASIFHEHTGRLMEVANLACSMSTNEDGIKIVRIA ANHLETLCPQIINAALALASRPKSQVVKNTMEMYKRTWEHYIHVLTEAVDDITSIDDFLAVSES HILEDVNRCIIALRDQDADNLDRAAGAIRGRAARVAHIVAGEMDSYEPGAYTEGVMRNVNLLTS IVIPEFVTQVNVALDALSKNALTALDDNQFVDISKKIYDTIHDIRCSVMIIRTPEELEDVSDLE DDHEVRSHTSTQTEGKTDRAKMTQLPEAEKEKIAEQVADFKKVKSKLDAEIEIWDDTSNDIIVL AKKMCMIMMEMTDFTRGKGPLKHTTDVIYAAKMISESGSRMDVLARQIANQCPDPPCKQDLLAY LEQIKFYSHQLKICSQVKAEIQNLGGELIVSAVSTACHFHSFTQKTLETEQPRCSSAFLSDEFD TGQTPSQLVQTTCN hide sequence

RefSeq Acc Id:	XP_017457341 ⟸ XM_017601852
- Peptide Label:	isoform X3
- UniProtKB:	F1M4I1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMLAPQEHKLDANKNLIVLNPLTVTEEDLRPPLEKRLEAIISGAALLADSSCTRDLHRERIIAE CNAIRQALQDLLSEYMSNIGKTERSNTLNTAIVNMSKKTRDLRRQLRKAIIDHISDSFLDTTVP LLVLIEAAKNGQVKEIKDYASIFHEHTGRLMEVANLACSMSTNEDGIKIVRIAANHLETLCPQI INAALALASRPKSQVVKNTMEMYKRTWEHYIHVLTEAVDDITSIDDFLAVSESHILEDVNRCII ALRDQDADNLDRAAGAIRGRAARVAHIVAGEMDSYEPGAYTEGVMRNVNLLTSIVIPEFVTQVN VALDALSKNALTALDDNQFVDISKKIYDTIHDIRCSVMIIRTPEELEDVSDLEDDHEVRSHTST QTEGKTDRAKMTQLPEAEKEKIAEQVADFKKVKSKLDAEIEIWDDTSNDIIVLAKKMCMIMMEM TDFTRGKGPLKHTTDVIYAAKMISESGSRMDVLARQIANQCPDPPCKQDLLAYLEQIKFYSHQL KICSQVKAEIQNLGGELIVSAVSTACHFHSFTQKTLETEQPRCSSAFLSDEFDTGQTPSQLVQT TCN hide sequence

RefSeq Acc Id:

XP_008771164 ⟸ XM_008772942

- Peptide Label:

isoform X5

- Sequence:

show sequence

MSKKTRDLRRQLRKAIIDHISDSFLDTTVPLLVLIEAAKNGQVKEIKDYASIFHEHTGRLMEVA
NLACSMSTNEDGIKIVRIAANHLETLCPQIINAALALASRPKSQVVKNTMEMYKRTWEHYIHVL
TEAVDDITSIDDFLAVSESHILEDVNRCIIALRDQDADNLDRAAGAIRGRAARVAHIVAGEMDS
YEPGAYTEGVMRNVNLLTSIVIPEFVTQVNVALDALSKNALTALDDNQFVDISKKIYDTIHDIR
CSVMIIRTPEELEDVSDLEDDHEVRSHTSTQTEGKTDRAKMTQLPEAEKEKIAEQVADFKKVKS
KLDAEIEIWDDTSNDIIVLAKKMCMIMMEMTDFTRGKGPLKHTTDVIYAAKMISESGSRMDVLA
RQIANQCPDPPCKQDLLAYLEQIKFYSHQLKICSQVKAEIQNLGGELIVSAVSTACHFHSFTQK
TLETEQPRCSSAFLSDEFDTGQTPSQLVQTTCN

hide sequence

RefSeq Acc Id:

ENSRNOP00000047382 ⟸ ENSRNOT00000049437

RefSeq Acc Id:	XP_038955205 ⟸ XM_039099277
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JX81 (UniProtKB/TrEMBL), A6JKY1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955207 ⟸ XM_039099279
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I5ZKV7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955208 ⟸ XM_039099280
- Peptide Label:	isoform X6

RefSeq Acc Id:

ENSRNOP00000070169 ⟸ ENSRNOT00000084660

RefSeq Acc Id:

ENSRNOP00000078455 ⟸ ENSRNOT00000099024

RefSeq Acc Id:

ENSRNOP00000054759 ⟸ ENSRNOT00000057950

RefSeq Acc Id:

NP_001413914 ⟸ NM_001426985

RefSeq Acc Id:	XP_063135362 ⟸ XM_063279292
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_063135360 ⟸ XM_063279290
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_063135361 ⟸ XM_063279291
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_063135363 ⟸ XM_063279293
- Peptide Label:	isoform X10

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B2RYN9-F1-model_v2	AlphaFold	B2RYN9	1-154	view protein structure
AF-F1M4I1-F1-model_v2	AlphaFold	F1M4I1	1-545	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1562230	AgrOrtholog
BioCyc Gene	G2FUF-3829	BioCyc
Ensembl Genes	ENSRNOG00000000373	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOG00000000378	Ensembl
Ensembl Transcript	ENSRNOT00000049437.4	UniProtKB/TrEMBL
	ENSRNOT00000057950.5	UniProtKB/TrEMBL
	ENSRNOT00000084660.2	UniProtKB/TrEMBL
	ENSRNOT00000099024.1	UniProtKB/TrEMBL
Gene3D-CATH	6.10.250.2510	UniProtKB/TrEMBL
	Alpha-catenin/vinculin-like	UniProtKB/TrEMBL
	Vinculin, Vh2 four-helix bundle	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:9035703	IMAGE-MGC_LOAD
InterPro	Alpha-catenin/vinculin-like_sf	UniProtKB/TrEMBL
	Alpha_catenin	UniProtKB/TrEMBL
	Vinculin/catenin	UniProtKB/TrEMBL
MGC_CLONE	MGC:188744	IMAGE-MGC_LOAD
NCBI Gene	361839	ENTREZGENE
PANTHER	ALPHA CATENIN	UniProtKB/TrEMBL
	CATENIN ALPHA-3	UniProtKB/TrEMBL
Pfam	Vinculin	UniProtKB/TrEMBL
PhenoGen	Ctnna3	PhenoGen
PRINTS	ALPHACATENIN	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000000373	RatGTEx
	ENSRNOG00000000378	RatGTEx
Superfamily-SCOP	SSF47220	UniProtKB/TrEMBL
UniProt	A0A0G2JX81	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZKV7	ENTREZGENE, UniProtKB/TrEMBL
	A6JKY1	ENTREZGENE, UniProtKB/TrEMBL
	B2RYN9_RAT	UniProtKB/TrEMBL
	F1M4I1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-06-02	Ctnna3	catenin alpha 3	AABR07044900.1		Data merged from RGD:15003207	737654	PROVISIONAL
2019-11-08	AABR07044900.1				Symbol and Name status set to provisional	45752	PROVISIONAL
2015-11-25	Ctnna3	catenin alpha 3	Ctnna3	catenin (cadherin associated protein), alpha 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-05-24	Ctnna3	catenin (cadherin associated protein), alpha 3	LOC100362857	rCG61001-like	Data merged from RGD:2323922	1643240	APPROVED
2010-05-06	LOC100362857	rCG61001-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-04-30	RGD1562230	similar to catenin alpha 3	RGD1562230_predicted	similar to catenin alpha 3 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1562230_predicted	similar to catenin alpha 3 (predicted)	LOC361839	similar to catenin alpha 3	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC361839	similar to catenin alpha 3			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)