Zfp462 (zinc finger protein 462) - Rat Genome Database

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Gene: Zfp462 (zinc finger protein 462) Rattus norvegicus
Analyze
Symbol: Zfp462
Name: zinc finger protein 462
RGD ID: 1562123
Description: Predicted to enable DNA binding activity and zinc ion binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within chromatin organization. Predicted to be active in nucleus. Orthologous to human ZNF462 (zinc finger protein 462); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC362522; RGD1562123; similar to hypothetical protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8574,465,383 - 74,606,020 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl574,468,643 - 74,606,020 (+)EnsemblGRCr8
mRatBN7.2569,670,085 - 69,810,729 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl569,670,328 - 69,810,327 (+)EnsemblmRatBN7.2
Rnor_6.0571,679,841 - 71,824,077 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl571,742,911 - 71,823,139 (+)Ensemblrn6Rnor6.0
Rnor_5.0575,851,111 - 75,987,972 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4572,167,944 - 72,960,561 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera568,539,404 - 68,675,674 (+)NCBICelera
Cytogenetic Map5q24NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acrolein  (EXP)
aflatoxin B1  (ISO)
amitrole  (EXP)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
buta-1,3-diene  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloroprene  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
cobalt dichloride  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
dibutyl phthalate  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
folic acid  (ISO)
FR900359  (ISO)
GSK-J4  (ISO)
hydrogen peroxide  (ISO)
L-methionine  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
menadione  (ISO)
methimazole  (EXP)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
ozone  (ISO)
panobinostat  (ISO)
paracetamol  (EXP)
potassium dichromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
rifampicin  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
sulforaphane  (ISO)
sunitinib  (ISO)
testosterone  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
trovafloxacin  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (ISO)
nucleus  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:17353115   PMID:20219459  


Genomics

Comparative Map Data
Zfp462
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8574,465,383 - 74,606,020 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl574,468,643 - 74,606,020 (+)EnsemblGRCr8
mRatBN7.2569,670,085 - 69,810,729 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl569,670,328 - 69,810,327 (+)EnsemblmRatBN7.2
Rnor_6.0571,679,841 - 71,824,077 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl571,742,911 - 71,823,139 (+)Ensemblrn6Rnor6.0
Rnor_5.0575,851,111 - 75,987,972 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4572,167,944 - 72,960,561 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera568,539,404 - 68,675,674 (+)NCBICelera
Cytogenetic Map5q24NCBI
ZNF462
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389106,860,158 - 107,013,634 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9106,862,286 - 107,013,634 (+)Ensemblhg38GRCh38
GRCh379109,625,447 - 109,775,915 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369108,665,199 - 108,813,628 (+)NCBIBuild 36Build 36hg18NCBI36
Build 349106,704,932 - 106,853,344NCBI
Celera980,129,626 - 80,278,036 (+)NCBICelera
Cytogenetic Map9q31.2NCBI
HuRef979,228,691 - 79,377,100 (+)NCBIHuRef
CHM1_19109,772,762 - 109,921,142 (+)NCBICHM1_1
T2T-CHM13v2.09119,036,267 - 119,189,919 (+)NCBIT2T-CHM13v2.0
Zfp462
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39454,942,038 - 55,083,563 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl454,945,048 - 55,083,563 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38454,944,491 - 55,083,563 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl454,945,048 - 55,083,563 (+)Ensemblmm10GRCm38
MGSCv37454,960,817 - 55,096,435 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36455,041,277 - 55,102,704 (+)NCBIMGSCv36mm8
Celera454,863,764 - 55,006,024 (+)NCBICelera
Cytogenetic Map4B2NCBI
cM Map429.5NCBI
Znf462
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541919,727,926 - 19,823,080 (-)Ensembl
ChiLan1.0NW_00495541919,730,432 - 19,871,189 (-)NCBIChiLan1.0ChiLan1.0
ZNF462
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21132,389,816 - 32,543,418 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1932,392,185 - 32,545,787 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0978,015,173 - 78,168,766 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19106,204,605 - 106,357,848 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9106,267,333 - 106,357,848 (+)EnsemblpanPan2panpan1.1
ZNF462
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11162,398,415 - 62,535,289 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1162,450,060 - 62,535,121 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1160,796,792 - 60,933,578 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01163,539,169 - 63,676,144 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1163,539,726 - 63,675,769 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11162,062,856 - 62,199,597 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01162,073,021 - 62,209,883 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01162,774,423 - 62,911,389 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Znf462
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947177,618,949 - 177,755,651 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365595,510,892 - 5,596,528 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365595,510,933 - 5,644,727 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF462
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1248,031,631 - 248,179,784 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11248,029,136 - 248,181,792 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21278,447,492 - 278,558,903 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF462
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11232,532,853 - 32,687,262 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1232,520,334 - 32,685,464 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603510,005,048 - 10,157,013 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf462
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247584,490,035 - 4,639,378 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247584,490,604 - 4,650,629 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Znf462
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1196,440,707 - 96,571,616 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Zfp462
453 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:177
Count of miRNA genes:110
Interacting mature miRNAs:120
Transcripts:ENSRNOT00000047225, ENSRNOT00000064623
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)53275164977751649Rat
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53801167083011670Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)55266537294894052Rat
1357396Bw44Body weight QTL 444.19body mass (VT:0001259)body weight (CMO:0000012)573779642118779642Rat
6907115Mcs29Mammary carcinoma susceptibility QTL 29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)53800433183004331Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)544924861153890773Rat
61380Edpm5Estrogen-dependent pituitary mass QTL 54.50.92pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)573779642103472210Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)52367149379046465Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)538207390136631402Rat
61386Bp49Blood pressure QTL 4916.6cerebrum integrity trait (VT:0010549)brain infarction volume (CMO:0001013)565089051103648916Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)548523123134369373Rat
2302381Bw84Body weight QTL 844.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)573779642118779642Rat
1357402Bw46Body weight QTL 464.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)573779642118779642Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53801167083011670Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53801167083011670Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)565089051166764498Rat
1331782Rf36Renal function QTL 363.296kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)539019942102105896Rat
6903292Stl28Serum triglyceride level QTL 282.60.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)53331167378311673Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)551657967166600247Rat
1578767Stresp17Stress response QTL 174.30.01blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)53275164977751649Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)53998594884985948Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)5692228281330203Rat
6903306Scl35Serum cholesterol QTL 352.60.0073blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53331167378311673Rat
7394708Emca11Estrogen-induced mammary cancer QTL 11mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)573176602118176602Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)53952692484526924Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54852312391770353Rat
1578673Bmd13Bone mineral density QTL 134.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)569474415114474415Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)560601597137492949Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906491770353Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)560511627105511627Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)536460764136631402Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)564589016109589016Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)574335621156302135Rat
2290005Mcs24Mammary carcinoma susceptibility QTL 24mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)569835120114835120Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906487027358Rat
2306971Anxrr21Anxiety related response QTL 219.47fear/anxiety-related behavior trait (VT:1000241)number of entries into a discrete space in an experimental apparatus (CMO:0000960)570969494136328156Rat
2316954Rf57Renal function QTL 570kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)56458901693503770Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)556546393101546393Rat
2312671Scl64Serum cholesterol level QTL 640.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)573779642118779642Rat
2316957Pur21Proteinuria QTL 216.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)56458901691762830Rat

Markers in Region
D5Mit2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2569,285,133 - 69,285,327 (+)MAPPERmRatBN7.2
Rnor_6.0573,869,372 - 73,869,565NCBIRnor6.0
Rnor_5.0578,024,623 - 78,024,816UniSTSRnor5.0
RGSC_v3.4572,389,008 - 72,389,202RGDRGSC3.4
RGSC_v3.4572,389,009 - 72,389,202UniSTSRGSC3.4
Celera568,154,413 - 68,154,606UniSTS
RGSC_v3.1572,394,122 - 72,394,315RGD
RH 3.4 Map5461.0UniSTS
RH 3.4 Map5461.0RGD
RH 2.0 Map5385.6RGD
Cytogenetic Map5q24UniSTS
D5Rat104  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2569,257,224 - 69,257,424 (+)MAPPERmRatBN7.2
Rnor_6.0573,841,480 - 73,841,679NCBIRnor6.0
Rnor_5.0577,995,999 - 77,996,198UniSTSRnor5.0
RGSC_v3.4572,360,750 - 72,360,950RGDRGSC3.4
RGSC_v3.4572,360,751 - 72,360,950UniSTSRGSC3.4
Celera568,126,617 - 68,126,816UniSTS
RGSC_v3.1572,365,863 - 72,366,063RGD
FHH x ACI Map534.68RGD
FHH x ACI Map534.68UniSTS
Cytogenetic Map5q24UniSTS
D5Got123  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2569,285,128 - 69,285,378 (+)MAPPERmRatBN7.2
Rnor_6.0573,869,367 - 73,869,616NCBIRnor6.0
Rnor_5.0578,024,618 - 78,024,867UniSTSRnor5.0
RGSC_v3.4572,389,003 - 72,389,253RGDRGSC3.4
RGSC_v3.4572,389,004 - 72,389,253UniSTSRGSC3.4
Celera568,154,408 - 68,154,657UniSTS
RGSC_v3.1572,394,117 - 72,394,366RGD
RH 3.4 Map5459.0UniSTS
RH 3.4 Map5459.0RGD
RH 2.0 Map5386.6RGD
Cytogenetic Map5q24UniSTS
D5Got233  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2569,257,189 - 69,257,389 (+)MAPPERmRatBN7.2
Rnor_6.0573,841,445 - 73,841,644NCBIRnor6.0
Rnor_5.0577,995,964 - 77,996,163UniSTSRnor5.0
RGSC_v3.4572,360,716 - 72,360,915UniSTSRGSC3.4
Celera568,126,582 - 68,126,781UniSTS
Cytogenetic Map5q24UniSTS
RH139843  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2569,671,640 - 69,671,822 (+)MAPPERmRatBN7.2
Rnor_6.0571,682,374 - 71,682,555NCBIRnor6.0
Rnor_5.0575,849,726 - 75,849,907UniSTSRnor5.0
RGSC_v3.4572,107,353 - 72,107,534UniSTSRGSC3.4
Celera568,537,796 - 68,537,977UniSTS
RH 3.4 Map5461.0UniSTS
Cytogenetic Map5q24UniSTS
BF389119  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2569,754,303 - 69,754,462 (+)MAPPERmRatBN7.2
Rnor_6.0571,764,739 - 71,764,897NCBIRnor6.0
Rnor_5.0575,931,943 - 75,932,101UniSTSRnor5.0
RGSC_v3.4572,887,061 - 72,887,219UniSTSRGSC3.4
Celera568,620,222 - 68,620,380UniSTS
RH 3.4 Map5463.0UniSTS
Cytogenetic Map5q24UniSTS
RH137856  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2569,684,386 - 69,684,581 (+)MAPPERmRatBN7.2
Rnor_6.0571,695,037 - 71,695,231NCBIRnor6.0
Rnor_5.0575,862,235 - 75,862,429UniSTSRnor5.0
RGSC_v3.4572,120,309 - 72,120,503UniSTSRGSC3.4
Celera568,550,530 - 68,550,724UniSTS
RH 3.4 Map5463.0UniSTS
Cytogenetic Map5q24UniSTS
D9S187E  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2569,733,808 - 69,733,879 (+)MAPPERmRatBN7.2
Rnor_6.0571,744,720 - 71,744,790NCBIRnor6.0
Rnor_5.0575,911,918 - 75,911,988UniSTSRnor5.0
RGSC_v3.4572,169,725 - 72,169,795UniSTSRGSC3.4
Celera568,600,307 - 68,600,377UniSTS
Cytogenetic Map5q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 70 59 6 334 170 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000047225   ⟹   ENSRNOP00000048648
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl574,468,643 - 74,606,020 (+)Ensembl
mRatBN7.2 Ensembl569,670,328 - 69,810,327 (+)Ensembl
Rnor_6.0 Ensembl571,742,911 - 71,823,139 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000167921   ⟹   ENSRNOP00000110816
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl574,468,643 - 74,606,020 (+)Ensembl
RefSeq Acc Id: NM_001427395   ⟹   NP_001414324
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8574,468,643 - 74,606,020 (+)NCBI
RefSeq Acc Id: XM_039111031   ⟹   XP_038966959
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8574,466,536 - 74,606,020 (+)NCBI
mRatBN7.2569,672,708 - 69,810,729 (+)NCBI
RefSeq Acc Id: XM_039111032   ⟹   XP_038966960
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8574,465,383 - 74,606,020 (+)NCBI
mRatBN7.2569,670,085 - 69,810,729 (+)NCBI
RefSeq Acc Id: XM_039111033   ⟹   XP_038966961
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8574,466,536 - 74,606,020 (+)NCBI
mRatBN7.2569,673,759 - 69,810,729 (+)NCBI
RefSeq Acc Id: XM_039111034   ⟹   XP_038966962
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8574,469,616 - 74,606,020 (+)NCBI
mRatBN7.2569,674,374 - 69,810,729 (+)NCBI
RefSeq Acc Id: XM_039111037   ⟹   XP_038966965
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8574,466,542 - 74,606,020 (+)NCBI
mRatBN7.2569,732,028 - 69,808,053 (+)NCBI
RefSeq Acc Id: XM_063287930   ⟹   XP_063144000
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8574,466,525 - 74,544,254 (+)NCBI
Ensembl Acc Id: ENSRNOP00000048648   ⟸   ENSRNOT00000047225
RefSeq Acc Id: XP_038966960   ⟸   XM_039111032
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038966959   ⟸   XM_039111031
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038966961   ⟸   XM_039111033
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038966962   ⟸   XM_039111034
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038966965   ⟸   XM_039111037
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063144000   ⟸   XM_063287930
- Peptide Label: isoform X2
RefSeq Acc Id: NP_001414324   ⟸   NM_001427395
- UniProtKB: D3ZFG7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000110816   ⟸   ENSRNOT00000167921

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZFG7-F1-model_v2 AlphaFold D3ZFG7 1-2504 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562123 AgrOrtholog
BioCyc Gene G2FUF-41247 BioCyc
Ensembl Genes ENSRNOG00000032048 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000047225 ENTREZGENE
  ENSRNOT00000047225.8 UniProtKB/TrEMBL
  ENSRNOT00000167921 ENTREZGENE
  ENSRNOT00000167921.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Zinc_finger/UBP_domain UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
NCBI Gene 362522 ENTREZGENE
PANTHER ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 2-LIKE ISOFORM X1 UniProtKB/TrEMBL
Pfam zf-C2H2_2nd_ZNF462 UniProtKB/TrEMBL
  zf-C2H2_7th_ZNF462 UniProtKB/TrEMBL
  zf-C2H2_ZNF462 UniProtKB/TrEMBL
  zf-C2H2_ZNF462_11 UniProtKB/TrEMBL
  zf-C2H2_ZNF462_1st UniProtKB/TrEMBL
PhenoGen Zfp462 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000032048 RatGTEx
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0ABK0LIX2_RAT UniProtKB/TrEMBL
  D3ZFG7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-29 Zfp462  zinc finger protein 462  RGD1562123_predicted  similar to hypothetical protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1562123_predicted  similar to hypothetical protein (predicted)  LOC362522  similar to hypothetical protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC362522  similar to hypothetical protein      Symbol and Name status set to provisional 70820 PROVISIONAL