Uap1 (UDP-N-acetylglucosamine pyrophosphorylase 1) - Rat Genome Database

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Gene: Uap1 (UDP-N-acetylglucosamine pyrophosphorylase 1) Rattus norvegicus
Analyze
Symbol: Uap1
Name: UDP-N-acetylglucosamine pyrophosphorylase 1
RGD ID: 1561967
Description: Enables UDP-N-acetylglucosamine diphosphorylase activity and carbohydrate binding activity. Involved in UDP-N-acetylglucosamine metabolic process. Predicted to be located in nucleoplasm and plasma membrane. Predicted to be active in cytosol. Orthologous to human UAP1 (UDP-N-acetylglucosamine pyrophosphorylase 1); PARTICIPATES IN amino sugar metabolic pathway; french type sialuria pathway; hexosamine biosynthetic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; alpha-Zearalanol; amitrole.
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: LOC498272; RGD1561967; similar to UDP-N-acetylglucosamine pyrophosphorylase 1 homolog; UDP-N-acetylhexosamine pyrophosphorylase
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81384,875,719 - 84,910,706 (-)NCBIGRCr8
mRatBN7.21382,342,946 - 82,377,558 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1382,342,946 - 82,377,469 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl61,714,435 - 1,715,952 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1384,970,273 - 85,004,757 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01386,263,551 - 86,298,072 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01383,495,511 - 83,529,995 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01388,463,532 - 88,497,901 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1388,463,532 - 88,497,901 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01393,089,458 - 93,123,827 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41385,953,072 - 85,987,137 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1382,003,544 - 82,038,040 (-)NCBICelera
Cytogenetic Map13q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4-hydroxyphenyl retinamide  (ISO)
acrolein  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
alpha-Zearalanol  (EXP)
amitrole  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bexarotene  (ISO)
bicalutamide  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
CGP 52608  (ISO)
chloropicrin  (ISO)
chloroprene  (EXP)
chromium(6+)  (ISO)
cisplatin  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
diuron  (EXP,ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
enzyme inhibitor  (ISO)
ethanol  (ISO)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
furan  (EXP)
genistein  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
isoflavones  (ISO)
isoprenaline  (ISO)
ivermectin  (ISO)
ketamine  (EXP)
Licochalcone B  (ISO)
manganese(II) chloride  (EXP)
mono(2-ethylhexyl) phthalate  (ISO)
nickel atom  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorooctanoic acid  (EXP)
permethrin  (EXP)
phenobarbital  (ISO)
propiconazole  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sunitinib  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
tetrachloromethane  (EXP,ISO)
tetrahydropalmatine  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
urethane  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. The cellular fate of glucose and its relevance in type 2 diabetes. Bouche C, etal., Endocr Rev. 2004 Oct;25(5):807-30.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Subcellular localization and tissue distribution of sialic acid precursor-forming enzymes. Van Rinsum J, etal., Biochem J. 1983 Jan 15;210(1):21-8.
Additional References at PubMed
PMID:25416956  


Genomics

Comparative Map Data
Uap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81384,875,719 - 84,910,706 (-)NCBIGRCr8
mRatBN7.21382,342,946 - 82,377,558 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1382,342,946 - 82,377,469 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl61,714,435 - 1,715,952 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1384,970,273 - 85,004,757 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01386,263,551 - 86,298,072 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01383,495,511 - 83,529,995 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01388,463,532 - 88,497,901 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1388,463,532 - 88,497,901 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01393,089,458 - 93,123,827 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41385,953,072 - 85,987,137 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1382,003,544 - 82,038,040 (-)NCBICelera
Cytogenetic Map13q24NCBI
UAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381162,561,531 - 162,601,240 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1162,561,722 - 162,601,240 (+)EnsemblGRCh38hg38GRCh38
GRCh371162,531,321 - 162,571,030 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361160,797,920 - 160,836,257 (+)NCBINCBI36Build 36hg18NCBI36
Build 341159,262,980 - 159,301,284NCBI
Celera1135,634,340 - 135,672,681 (+)NCBICelera
Cytogenetic Map1q23.3NCBI
HuRef1133,776,362 - 133,814,703 (+)NCBIHuRef
CHM1_11163,953,781 - 163,992,140 (+)NCBICHM1_1
T2T-CHM13v2.01161,905,541 - 161,945,257 (+)NCBIT2T-CHM13v2.0
Uap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,967,473 - 170,002,358 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1169,969,507 - 170,002,526 (-)EnsemblGRCm39 Ensembl
GRCm381170,141,223 - 170,174,964 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,141,938 - 170,174,957 (-)EnsemblGRCm38mm10GRCm38
MGSCv371172,072,134 - 172,105,077 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361171,978,678 - 172,011,621 (-)NCBIMGSCv36mm8
MGSCv361171,419,661 - 171,452,335 (-)NCBIMGSCv36mm8
Celera1172,578,664 - 172,611,368 (-)NCBICelera
Cytogenetic Map1H3NCBI
cM Map176.84NCBI
Uap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546213,760,693 - 13,800,417 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546213,765,197 - 13,799,937 (-)NCBIChiLan1.0ChiLan1.0
UAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2187,182,482 - 87,219,864 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1186,850,685 - 86,888,198 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01137,978,615 - 138,016,098 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11141,775,920 - 141,812,847 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1141,775,920 - 141,812,852 (+)Ensemblpanpan1.1panPan2
UAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13820,190,026 - 20,228,353 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3820,190,375 - 20,277,923 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3820,245,175 - 20,283,509 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03820,272,574 - 20,310,917 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3820,272,586 - 20,340,275 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13820,248,263 - 20,286,590 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03820,599,616 - 20,637,942 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03820,891,743 - 20,930,086 (-)NCBIUU_Cfam_GSD_1.0
Uap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050588,417,178 - 8,454,607 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936831732,967 - 771,478 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936831733,072 - 770,495 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl487,955,983 - 87,993,973 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1487,960,056 - 87,994,032 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2495,738,941 - 95,772,915 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1201,489,372 - 1,527,767 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl201,488,506 - 1,527,699 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038509,743 - 548,259 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Uap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624826992,050 - 1,027,893 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Uap1
138 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:278
Count of miRNA genes:186
Interacting mature miRNAs:203
Transcripts:ENSRNOT00000058560
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134608804691088046Rat
10755495Bp387Blood pressure QTL 3873.78arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133466346187525369Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1356056920101056920Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1380753256106807694Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
8655945Rf61Renal function QTL 613.6blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)136906051986800898Rat
71119Thym2Thymus enlargement QTL 23.8thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)134619797684753113Rat
1331783Bp221Blood pressure QTL 2213.72886arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)136906051986800898Rat
8655959Pur32Proteinuria QTL 328.4urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137402391897213863Rat
12879441Bp396Blood pressure QTL 396arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134569998390699983Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1365103704106807694Rat
1300166Kidm6Kidney mass QTL 63.93kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)136906051986800898Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133975454484754544Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)133843340883433408Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
7387280Uae43Urinary albumin excretion QTL 435.690.4174urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1366451204106807694Rat
738027Lnnr6Liver neoplastic nodule remodeling QTL 63.3liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)137486211785581182Rat
738026Lnnr5Liver neoplastic nodule remodeling QTL 53.29liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)135987440885581182Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133124133193395974Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1365103704106807694Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133741558482415584Rat
1641901Alcrsp6Alcohol response QTL 6response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)135236217197362171Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1361825626106807694Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1374862117101339893Rat

Markers in Region
AA437972  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.261,714,760 - 1,714,896 (-)MAPPERmRatBN7.2
mRatBN7.21382,350,887 - 82,351,891 (+)MAPPERmRatBN7.2
Rnor_6.01388,471,473 - 88,472,476NCBIRnor6.0
Rnor_6.0617,759,869 - 17,760,004NCBIRnor6.0
Rnor_5.01393,097,399 - 93,098,402UniSTSRnor5.0
Rnor_5.0627,667,010 - 27,667,145UniSTSRnor5.0
RGSC_v3.41385,961,013 - 85,962,016UniSTSRGSC3.4
RGSC_v3.4616,894,589 - 16,894,724UniSTSRGSC3.4
Celera61,520,459 - 1,520,594UniSTS
Celera1382,011,485 - 82,012,488UniSTS
Cytogenetic Map13q24UniSTS
Cytogenetic Map6q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000050986   ⟹   ENSRNOP00000097332
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl61,714,435 - 1,715,952 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000058560   ⟹   ENSRNOP00000055358
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1382,342,946 - 82,377,469 (-)Ensembl
Rnor_6.0 Ensembl1388,463,532 - 88,497,901 (-)Ensembl
RefSeq Acc Id: NM_001191930   ⟹   NP_001178859
RefSeq Status: INFERRED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81384,875,719 - 84,910,239 (-)NCBI
mRatBN7.21382,342,946 - 82,377,469 (-)NCBI
Rnor_6.01388,463,532 - 88,497,901 (-)NCBI
Rnor_5.01393,089,458 - 93,123,827 (-)NCBI
Celera1382,003,544 - 82,038,040 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006250222   ⟹   XP_006250284
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81384,875,725 - 84,910,706 (-)NCBI
mRatBN7.21382,342,946 - 82,377,558 (-)NCBI
Rnor_6.01388,463,547 - 88,497,896 (-)NCBI
Rnor_5.01393,089,458 - 93,123,827 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006250223   ⟹   XP_006250285
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81384,875,725 - 84,910,344 (-)NCBI
mRatBN7.21382,342,961 - 82,377,469 (-)NCBI
Rnor_6.01388,463,547 - 88,497,901 (-)NCBI
Rnor_5.01393,089,458 - 93,123,827 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001178859   ⟸   NM_001191930
- UniProtKB: D3ZF39 (UniProtKB/TrEMBL),   A0A8I6AUT9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250285   ⟸   XM_006250223
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006250284   ⟸   XM_006250222
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000055358   ⟸   ENSRNOT00000058560
Ensembl Acc Id: ENSRNOP00000097332   ⟸   ENSRNOT00000050986

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZF39-F1-model_v2 AlphaFold D3ZF39 1-521 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698983
Promoter ID:EPDNEW_R9508
Type:single initiation site
Name:Uap1_1
Description:UDP-N-acetylglucosamine pyrophosphorylase 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01388,497,793 - 88,497,853EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561967 AgrOrtholog
BioCyc Gene G2FUF-17486 BioCyc
Ensembl Genes ENSRNOG00000002926 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000031342 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000050986.5 UniProtKB/TrEMBL
  ENSRNOT00000058560.4 UniProtKB/TrEMBL
Gene3D-CATH 2.10.10.100 UniProtKB/TrEMBL
  Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A UniProtKB/TrEMBL
InterPro Nucleotide-diphossugar_trans UniProtKB/TrEMBL
  UDP-sugar_pyrophosphorylase UniProtKB/TrEMBL
  UDPGP_trans UniProtKB/TrEMBL
KEGG Report rno:498272 UniProtKB/TrEMBL
NCBI Gene 498272 ENTREZGENE
PANTHER PTHR11952 UniProtKB/TrEMBL
  UDP-N-ACETYLHEXOSAMINE PYROPHOSPHORYLASE UniProtKB/TrEMBL
Pfam UDPGP UniProtKB/TrEMBL
PhenoGen Uap1 PhenoGen
RatGTEx ENSRNOG00000002926 RatGTEx
  ENSRNOG00000031342 RatGTEx
Superfamily-SCOP SSF53448 UniProtKB/TrEMBL
UniProt A0A8I6AUT9 ENTREZGENE, UniProtKB/TrEMBL
  D3ZF39 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-13 Uap1  UDP-N-acetylglucosamine pyrophosphorylase 1  Uap1  UDP-N-acetylglucosamine pyrophosphorylase 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-23 Uap1  UDP-N-acteylglucosamine pyrophosphorylase 1  Uap1  UDP-N-acetylglucosamine pyrophosphorylase 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-29 Uap1  UDP-N-acetylglucosamine pyrophosphorylase 1  RGD1561967_predicted  similar to UDP-N-acteylglucosamine pyrophosphorylase 1 homolog (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1561967_predicted  similar to UDP-N-acteylglucosamine pyrophosphorylase 1 homolog (predicted)  LOC498272  similar to UDP-N-acteylglucosamine pyrophosphorylase 1 homolog  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC498272  similar to UDP-N-acteylglucosamine pyrophosphorylase 1 homolog      Symbol and Name status set to provisional 70820 PROVISIONAL