Tmem270 (transmembrane protein 270) - Rat Genome Database

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Gene: Tmem270 (transmembrane protein 270) Rattus norvegicus
Analyze
Symbol: Tmem270
Name: transmembrane protein 270
RGD ID: 1561903
Description: Predicted to be located in membrane. Orthologous to human TMEM270 (transmembrane protein 270); INTERACTS WITH 6-propyl-2-thiouracil; bisphenol A; cefaloridine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC288604; RGD1561903; similar to Williams-Beuren syndrome critical region protein 28 isoform A; Wbscr28; Williams-Beuren syndrome chromosome region 28; Williams-Beuren syndrome chromosome region 28 (human)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81227,430,092 - 27,435,243 (+)NCBIGRCr8
mRatBN7.21221,793,631 - 21,798,723 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1221,794,130 - 21,798,731 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01224,803,204 - 24,808,287 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1224,803,686 - 24,808,288 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01226,803,487 - 26,808,557 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41222,858,647 - 22,863,206 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1223,554,551 - 23,559,628 (+)NCBICelera
Cytogenetic Map12q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 9 of 9 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tmem270Ratautism spectrum disorder  ISOTMEM270 (Homo sapiens)8554872ClinVar Annotator: match by term: Autism spectrum disorderClinVarPMID:21658581 more ...
Tmem270Ratautistic disorder  ISOTMEM270 (Homo sapiens)8554872ClinVar Annotator: match by term: AutismClinVarPMID:21681106 and PMID:30208311
Tmem270Ratintestinal volvulus  ISOTMEM270 (Homo sapiens)8554872ClinVar Annotator: match by term: INTESTINAL MALROTATION and FAMILIALClinVarPMID:25741868
Tmem270RatNeurodevelopmental Disorders  ISOTMEM270 (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868
Tmem270Ratpleomorphic xanthoastrocytoma  ISOTMEM270 (Homo sapiens)8554872ClinVar Annotator: match by term: Pleomorphic xanthoastrocytomaClinVarPMID:28299358
Tmem270Ratschizophrenia  ISOTMEM270 (Homo sapiens)8554872ClinVar Annotator: match by term: SchizophreniaClinVarPMID:21681106 and PMID:30208311
Tmem270Ratsupravalvular aortic stenosis  ISOTMEM270 (Homo sapiens)8554872ClinVar Annotator: match by term: Supravalvar aortic stenosisClinVarPMID:10627943 more ...
Tmem270RatVolvulus Of Midgut  ISOTMEM270 (Homo sapiens)8554872ClinVar Annotator: match by term: Volvulus of midgutClinVarPMID:25741868
Tmem270RatWilliams-Beuren syndrome  ISOTMEM270 (Homo sapiens)8554872ClinVar Annotator: match by term: Williams syndromeClinVarPMID:25741868
1 to 9 of 9 rows

1 to 20 of 26 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tmem270Rat17beta-hydroxy-5alpha-androstan-3-one decreases expressionISOTMEM270 (Homo sapiens)6480464Dihydrotestosterone results in decreased expression of TMEM270 mRNACTDPMID:17624924
Tmem270Rat3,4-methylenedioxymethamphetamine increases expressionISOTmem270 (Mus musculus)6480464N-Methyl-3 and 4-methylenedioxyamphetamine results in increased expression of TMEM270 mRNACTDPMID:20188158
Tmem270Rat6-propyl-2-thiouracil increases expressionEXP 6480464Propylthiouracil results in increased expression of TMEM270 mRNACTDPMID:24780913
Tmem270Rataflatoxin B1 decreases methylationISOTMEM270 (Homo sapiens)6480464Aflatoxin B1 results in decreased methylation of TMEM270 intronCTDPMID:30157460
Tmem270Ratarsane affects methylationISOTMEM270 (Homo sapiens)6480464Arsenic affects the methylation of TMEM270 geneCTDPMID:25304211
Tmem270Ratarsenic atom affects methylationISOTMEM270 (Homo sapiens)6480464Arsenic affects the methylation of TMEM270 geneCTDPMID:25304211
Tmem270Ratbenzo[a]pyrene increases methylationISOTMEM270 (Homo sapiens)6480464Benzo(a)pyrene results in increased methylation of TMEM270 promoterCTDPMID:27901495
Tmem270Ratbenzo[e]pyrene decreases methylationISOTMEM270 (Homo sapiens)6480464benzo(e)pyrene results in decreased methylation of TMEM270 intronCTDPMID:30157460
Tmem270Ratbisphenol A decreases expressionEXP 6480464bisphenol A results in decreased expression of TMEM270 mRNACTDPMID:25181051 and PMID:30816183
Tmem270Ratbutanal increases expressionISOTMEM270 (Homo sapiens)6480464butyraldehyde results in increased expression of TMEM270 mRNACTDPMID:26079696
Tmem270Ratcadmium dichloride increases expressionISOTMEM270 (Homo sapiens)6480464Cadmium Chloride results in increased expression of TMEM270 mRNACTDPMID:26472689
Tmem270Ratcefaloridine increases expressionEXP 6480464Cephaloridine results in increased expression of TMEM270 mRNACTDPMID:18500788
Tmem270RatCGP 52608 multiple interactionsISOTMEM270 (Homo sapiens)6480464CGP 52608 promotes the reaction [RORA protein binds to TMEM270 gene]CTDPMID:28238834
Tmem270Ratmethapyrilene decreases methylationISOTMEM270 (Homo sapiens)6480464Methapyrilene results in decreased methylation of TMEM270 intronCTDPMID:30157460
Tmem270Ratmethoxychlor affects methylationEXP 6480464Methoxychlor affects the methylation of TMEM270 geneCTDPMID:35440735
Tmem270Ratparacetamol affects expressionISOTmem270 (Mus musculus)6480464Acetaminophen affects the expression of TMEM270 mRNACTDPMID:17562736
Tmem270Ratparacetamol decreases expressionEXP 6480464Acetaminophen results in decreased expression of TMEM270 mRNACTDPMID:33387578
Tmem270Ratpentanal increases expressionISOTMEM270 (Homo sapiens)6480464pentanal results in increased expression of TMEM270 mRNACTDPMID:26079696
Tmem270Ratpermethrin decreases expressionISOTMEM270 (Homo sapiens)6480464Permethrin results in decreased expression of TMEM270 mRNACTDPMID:37047231
Tmem270Ratpropanal increases expressionISOTMEM270 (Homo sapiens)6480464propionaldehyde results in increased expression of TMEM270 mRNACTDPMID:26079696

1 to 20 of 26 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tmem270Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043


#
Reference Title
Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions


Tmem270
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81227,430,092 - 27,435,243 (+)NCBIGRCr8
mRatBN7.21221,793,631 - 21,798,723 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1221,794,130 - 21,798,731 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01224,803,204 - 24,808,287 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1224,803,686 - 24,808,288 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01226,803,487 - 26,808,557 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41222,858,647 - 22,863,206 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1223,554,551 - 23,559,628 (+)NCBICelera
Cytogenetic Map12q12NCBI
TMEM270
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38773,860,848 - 73,865,890 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl773,861,159 - 73,865,890 (+)EnsemblGRCh38hg38GRCh38
GRCh37773,275,489 - 73,280,220 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36772,913,425 - 72,918,159 (+)NCBINCBI36Build 36hg18NCBI36
Celera768,754,191 - 68,758,926 (+)NCBICelera
Cytogenetic Map7q11.23NCBI
HuRef769,158,848 - 69,163,564 (+)NCBIHuRef
CHM1_1773,420,949 - 73,425,683 (+)NCBICHM1_1
T2T-CHM13v2.0775,061,792 - 75,066,837 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2772,608,561 - 72,613,295 (+)NCBI
Tmem270
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395134,930,447 - 134,935,587 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5134,930,447 - 134,935,587 (-)EnsemblGRCm39 Ensembl
GRCm385134,901,593 - 134,906,733 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5134,901,593 - 134,906,733 (-)EnsemblGRCm38mm10GRCm38
MGSCv375135,377,464 - 135,382,603 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365135,186,221 - 135,191,360 (-)NCBIMGSCv36mm8
Celera5131,912,152 - 131,917,291 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map574.88NCBI
Tmem270
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495545613,947,773 - 13,953,965 (-)NCBIChiLan1.0ChiLan1.0
TMEM270
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2691,037,439 - 91,048,490 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17139,302,070 - 139,313,122 (-)NCBINHGRI_mPanPan1
PanPan1.1781,011,217 - 81,016,100 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl781,011,217 - 81,016,100 (+)Ensemblpanpan1.1panPan2
TMEM270
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.166,472,495 - 6,475,051 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl66,472,520 - 6,474,976 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha68,170,118 - 8,172,674 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.066,287,508 - 6,290,064 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl66,286,533 - 6,289,989 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.166,277,242 - 6,279,798 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.066,225,118 - 6,227,687 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.066,388,863 - 6,391,438 (-)NCBIUU_Cfam_GSD_1.0
Tmem270
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344131,029,940 - 131,032,296 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365433,004,326 - 3,006,608 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365433,004,326 - 3,006,608 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM270
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl311,075,901 - 11,078,442 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1311,059,177 - 11,079,858 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2310,752,341 - 10,768,852 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM270
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1289,212,358 - 9,217,628 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl289,212,377 - 9,217,517 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660707,273,087 - 7,296,893 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem270
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474014,017,188 - 14,021,587 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Tmem270
37 total Variants


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
12 26807377 26807378 C T snv IS/Kyo (KyushuU), DOB/Oda (KyushuU), IS-Tlk/Kyo (KyushuU) View more Information

Predicted Target Of
Summary Value
Count of predictions:37
Count of miRNA genes:36
Interacting mature miRNAs:37
Transcripts:ENSRNOT00000033499
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 54 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)121914436246669029Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
61324Eae5Experimental allergic encephalomyelitis QTL 514nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)121961087046669029Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12852542328064601Rat
737822Alc10Alcohol consumption QTL 102.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)121961087040218516Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)121587265332974238Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123297788Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat

1 to 10 of 54 rows



alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
8 6 36 106 35 40 13 15 13 6 122 67 93 31 56 27



Ensembl Acc Id: ENSRNOT00000033499   ⟹   ENSRNOP00000034323
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1221,794,130 - 21,798,731 (+)Ensembl
Rnor_6.0 Ensembl1224,803,686 - 24,808,288 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000114794   ⟹   ENSRNOP00000082087
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1221,794,130 - 21,798,731 (+)Ensembl
RefSeq Acc Id: XM_006249213   ⟹   XP_006249275
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81227,430,092 - 27,435,243 (+)NCBI
mRatBN7.21221,793,631 - 21,798,723 (+)NCBI
Rnor_6.01224,803,204 - 24,808,287 (+)NCBI
Rnor_5.01226,803,487 - 26,808,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598507   ⟹   XP_017453996
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81227,430,657 - 27,435,243 (+)NCBI
mRatBN7.21221,794,137 - 21,798,723 (+)NCBI
Rnor_6.01224,803,700 - 24,808,287 (+)NCBI
Sequence:
RefSeq Acc Id: XM_213758   ⟹   XP_213758
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81227,430,533 - 27,435,243 (+)NCBI
mRatBN7.21221,794,110 - 21,798,723 (+)NCBI
Rnor_6.01224,803,689 - 24,808,287 (+)NCBI
Rnor_5.01226,803,487 - 26,808,557 (+)NCBI
RGSC_v3.41222,858,647 - 22,863,206 (+)RGD
Sequence:
RefSeq Acc Id: XP_213758   ⟸   XM_213758
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006249275   ⟸   XM_006249213
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017453996   ⟸   XM_017598507
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSRNOP00000034323   ⟸   ENSRNOT00000033499
Ensembl Acc Id: ENSRNOP00000082087   ⟸   ENSRNOT00000114794

Name Modeler Protein Id AA Range Protein Structure
AF-D3ZKV0-F1-model_v2 AlphaFold D3ZKV0 1-264 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13698570
Promoter ID:EPDNEW_R9090
Type:single initiation site
Name:Tmem270_1
Description:transmembrane protein 270
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01224,803,694 - 24,803,754EPDNEW


1 to 16 of 16 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-19588 BioCyc
Ensembl Genes ENSRNOG00000001474 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000033499 ENTREZGENE
  ENSRNOT00000033499.6 UniProtKB/TrEMBL
  ENSRNOT00000114794 ENTREZGENE
  ENSRNOT00000114794.1 UniProtKB/TrEMBL
  ENSRNOT00000165625 ENTREZGENE
InterPro WBS28 UniProtKB/TrEMBL
NCBI Gene 288604 ENTREZGENE
PANTHER PTHR37369 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 270 UniProtKB/TrEMBL
Pfam WBS28 UniProtKB/TrEMBL
PhenoGen Tmem270 PhenoGen
RatGTEx ENSRNOG00000001474 RatGTEx
UniProt A0A8I6G8Y8 ENTREZGENE, UniProtKB/TrEMBL
  D3ZKV0 ENTREZGENE, UniProtKB/TrEMBL
1 to 16 of 16 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-05-18 Tmem270  transmembrane protein 270  Wbscr28  Williams-Beuren syndrome chromosome region 28  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-02-04 Wbscr28  Williams-Beuren syndrome chromosome region 28  Wbscr28  Williams-Beuren syndrome chromosome region 28 (human)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-29 Wbscr28  Williams-Beuren syndrome chromosome region 28 (human)  RGD1561903_predicted  similar to Williams-Beuren syndrome critical region protein 28 isoform A (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1561903_predicted  similar to Williams-Beuren syndrome critical region protein 28 isoform A (predicted)  LOC288604  similar to Williams-Beuren syndrome critical region protein 28 isoform A  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC288604  similar to Williams-Beuren syndrome critical region protein 28 isoform A      Symbol and Name status set to provisional 70820 PROVISIONAL