Siva1 (SIVA1, apoptosis-inducing factor) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Siva1 (SIVA1, apoptosis-inducing factor) Rattus norvegicus
Analyze
Symbol: Siva1
Name: SIVA1, apoptosis-inducing factor
RGD ID: 1561872
Description: Predicted to enable tumor necrosis factor receptor superfamily binding activity; virus receptor activity; and zinc ion binding activity. Predicted to be involved in several processes, including activation-induced cell death of T cells; apoptotic signaling pathway; and positive regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway. Predicted to be located in mitochondrion and nucleoplasm. Orthologous to human SIVA1 (SIVA1 apoptosis inducing factor); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: apoptosis regulatory protein Siva; Cd27 binding protein (Hindu God of destruction); CD27-binding protein; CD27BP; Siva
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86137,526,416 - 137,530,790 (+)NCBIGRCr8
mRatBN7.26131,705,323 - 131,709,697 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6131,705,323 - 131,709,690 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6131,874,637 - 131,879,016 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06132,171,743 - 132,176,118 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06131,534,212 - 131,538,589 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06137,209,999 - 137,214,379 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6137,210,052 - 137,214,388 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06146,216,931 - 146,221,556 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46137,631,408 - 137,635,724 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera6129,253,021 - 129,257,273 (+)NCBICelera
Cytogenetic Map6q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(1->4)-beta-D-glucan  (ISO)
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
3-methylcholanthrene  (ISO)
acetamide  (EXP)
acrolein  (ISO)
aflatoxin B1  (ISO)
alpha-pinene  (ISO)
amiodarone  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
beauvericin  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bortezomib  (ISO)
butan-1-ol  (ISO)
calcitriol  (ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloroacetaldehyde  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
cidofovir anhydrous  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
clodronic acid  (ISO)
cobalt dichloride  (ISO)
cocaine  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (EXP,ISO)
DDE  (ISO)
dicrotophos  (ISO)
diethylstilbestrol  (ISO)
dioxygen  (ISO)
endosulfan  (EXP)
fenofibrate  (EXP)
fipronil  (EXP)
folic acid  (ISO)
gentamycin  (EXP)
ifosfamide  (ISO)
inulin  (ISO)
isoprenaline  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
metformin  (EXP)
methyl methanesulfonate  (ISO)
mitomycin C  (ISO)
nicotine  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
piroxicam  (ISO)
rac-lactic acid  (ISO)
sodium arsenite  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
toluene  (EXP)
topotecan  (EXP)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
tungsten  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vincristine  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA,ISO)
mitochondrion  (ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9177220   PMID:9853261   PMID:11601913   PMID:12011449   PMID:12477932   PMID:12478477   PMID:14739602   PMID:15034012   PMID:16491128   PMID:16683188   PMID:19251341  


Genomics

Comparative Map Data
Siva1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86137,526,416 - 137,530,790 (+)NCBIGRCr8
mRatBN7.26131,705,323 - 131,709,697 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6131,705,323 - 131,709,690 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6131,874,637 - 131,879,016 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06132,171,743 - 132,176,118 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06131,534,212 - 131,538,589 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06137,209,999 - 137,214,379 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6137,210,052 - 137,214,388 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06146,216,931 - 146,221,556 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46137,631,408 - 137,635,724 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera6129,253,021 - 129,257,273 (+)NCBICelera
Cytogenetic Map6q32NCBI
SIVA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814104,753,147 - 104,759,654 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14104,753,147 - 104,768,494 (+)EnsemblGRCh38hg38GRCh38
GRCh3714105,219,484 - 105,225,991 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3614104,290,515 - 104,297,041 (+)NCBINCBI36Build 36hg18NCBI36
Celera1485,274,542 - 85,281,070 (+)NCBICelera
Cytogenetic Map14q32.33NCBI
HuRef1485,416,458 - 85,422,986 (+)NCBIHuRef
CHM1_114105,157,086 - 105,163,614 (+)NCBICHM1_1
T2T-CHM13v2.01498,996,033 - 99,002,540 (+)NCBIT2T-CHM13v2.0
Siva1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912112,611,262 - 112,615,586 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12112,611,113 - 112,615,583 (+)EnsemblGRCm39 Ensembl
GRCm3812112,644,828 - 112,649,152 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12112,644,679 - 112,649,149 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712113,883,039 - 113,887,363 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612113,092,716 - 113,096,953 (+)NCBIMGSCv36mm8
Celera12113,858,455 - 113,862,779 (+)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1261.2NCBI
Siva1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555383,197,983 - 3,202,782 (+)NCBIChiLan1.0ChiLan1.0
SIVA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215105,935,284 - 105,941,823 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan114105,151,787 - 105,158,327 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01485,404,148 - 85,408,254 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.114105,196,118 - 105,202,678 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl14105,196,118 - 105,202,678 (+)Ensemblpanpan1.1panPan2
SIVA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1872,309,400 - 72,313,726 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl872,309,447 - 72,313,640 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha871,815,163 - 71,819,494 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0872,584,386 - 72,588,709 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl872,583,252 - 72,588,623 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1872,267,010 - 72,271,332 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0872,310,264 - 72,314,586 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0872,709,843 - 72,714,165 (+)NCBIUU_Cfam_GSD_1.0
Siva1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086401,812,507 - 1,821,101 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936621644,852 - 650,132 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936621641,456 - 650,067 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SIVA1
(Sus scrofa - pig)		 No map positions available.
SIVA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12482,689,233 - 82,695,073 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2482,689,254 - 82,695,146 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605370,110,198 - 70,116,322 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Siva1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624734530,711 - 535,281 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Siva1
16 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:616
Count of miRNA genes:279
Interacting mature miRNAs:344
Transcripts:ENSRNOT00000031788, ENSRNOT00000065213
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)694968928139968928Rat
4145118Mcs26Mammary carcinoma susceptibility QTL 260.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6106752656132339866Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)6122549046137801795Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)694968928137848904Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6105156861140994061Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6100364669140994061Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)685311061133478515Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)688047916133047916Rat
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)6122549046140994061Rat
737976Pia24Pristane induced arthritis QTL 24joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)6112636280140994061Rat
2312560Pur20Proteinuria QTL 202.10.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)6125628133137801795Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6100671796132340886Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
8552796Vie3Viral induced encephalitis QTL 32.6brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)696833997140994061Rat
1300076Glom8Glomerulus QTL 879e-09kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)686894788131894788Rat
2293085Iddm29Insulin dependent diabetes mellitus QTL 297.66blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)6122549046140286318Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000031788   ⟹   ENSRNOP00000034257
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6131,705,323 - 131,709,690 (+)Ensembl
Rnor_6.0 Ensembl6137,210,052 - 137,214,388 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000065213   ⟹   ENSRNOP00000059044
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6131,705,439 - 131,709,690 (+)Ensembl
Rnor_6.0 Ensembl6137,210,121 - 137,214,372 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000118809   ⟹   ENSRNOP00000093784
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6131,705,451 - 131,709,690 (+)Ensembl
RefSeq Acc Id: NM_001394537   ⟹   NP_001381466
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86137,526,416 - 137,530,790 (+)NCBI
mRatBN7.26131,705,323 - 131,709,697 (+)NCBI
Ensembl Acc Id: ENSRNOP00000034257   ⟸   ENSRNOT00000031788
Ensembl Acc Id: ENSRNOP00000059044   ⟸   ENSRNOT00000065213
Ensembl Acc Id: ENSRNOP00000093784   ⟸   ENSRNOT00000118809
RefSeq Acc Id: NP_001381466   ⟸   NM_001394537
- UniProtKB: P59692 (UniProtKB/Swiss-Prot),   A6KBV7 (UniProtKB/TrEMBL),   A4FTX4 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P59692-F1-model_v2 AlphaFold P59692 1-177 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694850
Promoter ID:EPDNEW_R5375
Type:initiation region
Name:Siva1_1
Description:SIVA1, apoptosis-inducing factor
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.06137,210,078 - 137,210,138EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561872 AgrOrtholog
BioCyc Gene G2FUF-35782 BioCyc
Ensembl Genes ENSRNOG00000028640 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055005158 UniProtKB/Swiss-Prot
  ENSRNOG00055028698 UniProtKB/Swiss-Prot
  ENSRNOG00060026657 UniProtKB/Swiss-Prot
  ENSRNOG00065028062 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000031788.6 UniProtKB/Swiss-Prot
  ENSRNOT00000065213.5 UniProtKB/TrEMBL
  ENSRNOT00000118809.1 UniProtKB/TrEMBL
  ENSRNOT00055008269 UniProtKB/Swiss-Prot
  ENSRNOT00055049682 UniProtKB/Swiss-Prot
  ENSRNOT00060046232 UniProtKB/Swiss-Prot
  ENSRNOT00065048391 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7318866 IMAGE-MGC_LOAD
InterPro Siva UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:105767 IMAGE-MGC_LOAD
NCBI Gene 362791 ENTREZGENE
PANTHER APOPTOSIS REGULATORY PROTEIN SIVA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR14365 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Siva UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Siva1 PhenoGen
PIRSF Siva_cd27_bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000028640 RatGTEx
  ENSRNOG00055005158 RatGTEx
  ENSRNOG00055028698 RatGTEx
  ENSRNOG00060026657 RatGTEx
  ENSRNOG00065028062 RatGTEx
UniProt A0A8I6GKF8_RAT UniProtKB/TrEMBL
  A4FTX4 ENTREZGENE, UniProtKB/TrEMBL
  A6KBV7 ENTREZGENE, UniProtKB/TrEMBL
  P59692 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-07 Siva1  SIVA1, apoptosis-inducing factor  Siva_predicted  Cd27 binding protein (Hindu God of destruction) (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 Siva_predicted  Cd27 binding protein (Hindu God of destruction) (predicted)  Siva  Cd27 binding protein (Hindu God of destruction)  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 Siva  Cd27 binding protein (Hindu God of destruction)      Symbol and Name status set to provisional 70820 PROVISIONAL