Tmem170b (transmembrane protein 170B)

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Gene: Tmem170b (transmembrane protein 170B) Rattus norvegicus

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Symbol:

Tmem170b

Name:

transmembrane protein 170B

RGD ID:

1561506

Description:

Predicted to be involved in negative regulation of canonical Wnt signaling pathway. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human TMEM170B (transmembrane protein 170B); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

Ac1258; liver regeneration-related protein LRRG102; LOC361230

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TMEM170B (transmembrane protein 170B)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB
Mus musculus (house mouse):	Tmem170b (transmembrane protein 170B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tmem170b (transmembrane protein 170B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TMEM170B (transmembrane protein 170B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TMEM170B (transmembrane protein 170B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tmem170b (transmembrane protein 170B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TMEM170B (transmembrane protein 170B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TMEM170B (transmembrane protein 170B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tmem170b (transmembrane protein 170B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	POLM (DNA polymerase mu)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Tmem170b (transmembrane protein 170B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	TMEM170B (transmembrane protein 170B)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tmem170b (transmembrane protein 170B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG12341	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	F43G9.13	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	23,336,914 - 23,375,707 (-)	NCBI		GRCr8
mRatBN7.2	17	23,131,151 - 23,169,946 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	23,131,456 - 23,170,248 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	23,005,438 - 23,037,278 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	24,609,111 - 24,640,951 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	22,946,382 - 22,978,227 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	22,832,641 - 22,863,966 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	22,832,641 - 22,863,966 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	24,806,010 - 24,837,335 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	29,024,816 - 29,056,718 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	17	22,809,771 - 22,841,580 (-)	NCBI		Celera
Cytogenetic Map	17	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2-hydroxypropanoic acid (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

aflatoxin M1 (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

azathioprine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

cisplatin (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

dorsomorphin (ISO)

endosulfan (EXP)

entinostat (ISO)

gentamycin (EXP)

indometacin (ISO)

leflunomide (ISO)

methylisothiazolinone (ISO)

panobinostat (ISO)

paracetamol (EXP)

quercetin (ISO)

rac-lactic acid (ISO)

SB 431542 (ISO)

succimer (ISO)

sunitinib (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

trichostatin A (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of canonical Wnt signaling pathway (IBA,ISO,ISS)

Cellular Component

membrane (IEA)

plasma membrane (IBA,ISO,ISS)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:29367600

Genomics

Comparative Map Data

Tmem170b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	23,336,914 - 23,375,707 (-)	NCBI		GRCr8
mRatBN7.2	17	23,131,151 - 23,169,946 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	23,131,456 - 23,170,248 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	23,005,438 - 23,037,278 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	24,609,111 - 24,640,951 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	22,946,382 - 22,978,227 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	22,832,641 - 22,863,966 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	22,832,641 - 22,863,966 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	24,806,010 - 24,837,335 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	29,024,816 - 29,056,718 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	17	22,809,771 - 22,841,580 (-)	NCBI		Celera
Cytogenetic Map	17	p12	NCBI

TMEM170B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	11,537,749 - 11,583,524 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	11,537,749 - 11,583,524 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	11,537,982 - 11,583,757 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	11,646,497 - 11,691,743 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	6	12,766,976 - 12,811,903 (+)	NCBI		Celera
Cytogenetic Map	6	p24.2	NCBI
HuRef	6	11,470,965 - 11,515,939 (+)	NCBI		HuRef
CHM1_1	6	11,541,017 - 11,585,993 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	11,406,440 - 11,451,893 (+)	NCBI		T2T-CHM13v2.0

Tmem170b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	41,759,358 - 41,794,830 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	41,759,383 - 41,794,831 (+)	Ensembl		GRCm39 Ensembl
GRCm38	13	41,605,882 - 41,641,354 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	41,605,907 - 41,641,355 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	41,701,585 - 41,736,726 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	41,638,354 - 41,646,028 (+)	NCBI		MGSCv36	mm8
Celera	13	42,686,572 - 42,721,694 (+)	NCBI		Celera
Cytogenetic Map	13	A4	NCBI
cM Map	13	20.55	NCBI

Tmem170b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955465	2,949,635 - 2,958,103 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955465	2,942,165 - 2,974,082 (-)	NCBI	ChiLan1.0	ChiLan1.0

TMEM170B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	26,185,995 - 26,231,397 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	22,176,106 - 22,221,496 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	11,377,463 - 11,422,869 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	11,654,778 - 11,699,696 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	11,654,778 - 11,691,737 (+)	Ensembl	panpan1.1		panPan2

TMEM170B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	35	11,150,318 - 11,184,095 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	35	11,150,152 - 11,176,659 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	35	11,101,781 - 11,145,018 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	35	11,255,334 - 11,298,719 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	35	11,254,710 - 11,281,258 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	35	11,085,161 - 11,128,305 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	35	11,133,630 - 11,176,991 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	35	12,458,368 - 12,501,745 (+)	NCBI		UU_Cfam_GSD_1.0

Tmem170b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	13,243,687 - 13,260,529 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936534	1,519,430 - 1,529,438 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936534	1,519,079 - 1,529,909 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TMEM170B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	8,093,890 - 8,127,414 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	8,093,820 - 8,132,393 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	8,704,317 - 8,724,037 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TMEM170B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	60,567,332 - 60,610,604 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	60,575,322 - 60,610,524 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	11,564,947 - 11,608,442 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tmem170b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624756	14,498,054 - 14,529,096 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624756	14,491,241 - 14,528,581 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Tmem170b
174 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	292
Count of miRNA genes:	173
Interacting mature miRNAs:	203
Transcripts:	ENSRNOT00000046157
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354581	Bp247	Blood pressure QTL 247	4.5		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	17	1	69599340	Rat
2300002	Iddm36	Insulin dependent diabetes mellitus QTL 36	1.98		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	17	9991286	40540197	Rat
631499	Stl1	Serum triglyceride level QTL 1	3.6		blood triglyceride amount (VT:0002644)	blood triglyceride level (CMO:0000118)	17	3271398	27389946	Rat
2293664	Bmd28	Bone mineral density QTL 28	5.1	0.0001	femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	17	4354487	27028127	Rat
1354640	Scl32	Serum cholesterol level QTL 32	5.4		blood HDL cholesterol amount (VT:0000184)	blood high density lipoprotein cholesterol level (CMO:0000052)	17	15781592	60781592	Rat
1300123	Bp194	Blood pressure QTL 194	2.82		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	2115149	34551001	Rat
1582224	Epfw4	Epididymal fat weight QTL 4	3.5	0.0058	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	17	9201365	23653323	Rat
1582225	Bw67	Body weight QTL 67	6.2	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	17	9201365	23653323	Rat
1582226	Bw64	Body weight QTL 64	4.2	0.0017	body mass (VT:0001259)	body weight (CMO:0000012)	17	9201365	23653323	Rat
70157	Niddm32	Non-insulin dependent diabetes mellitus QTL 32	4.34		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	22454924	50909196	Rat
1354651	Lmblg2	Limb length QTL 2	6		tibia length (VT:0004357)	tibia length (CMO:0000450)	17	4299130	69599340	Rat
1354628	Stl13	Serum triglyceride level QTL 13	3.8		blood triglyceride amount (VT:0002644)	blood triglyceride level (CMO:0000118)	17	21293039	60781592	Rat
10401807	Kidm52	Kidney mass QTL 52			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	17	1	31701463	Rat
10054088	Scort28	Serum corticosterone level QTL 28	2.04	0.0102	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	17	4528038	49528038	Rat
1354630	Cm34	Cardiac mass QTL 34	8.7		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	17	4299130	69599340	Rat
61394	Bp8	Blood pressure QTL 8	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	23080567	59555013	Rat
1582208	Kidm32	Kidney mass QTL 32	3.9	0.0018	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	17	9201365	23653323	Rat
1354638	Insul1	Insulin level QTL 1	4.8		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	17	4299130	69599340	Rat
1354613	Kidm14	Kidney mass QTL 14	6.2		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	17	4299130	35837242	Rat
1331765	Hrtrt15	Heart rate QTL 15	4.094		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	17	15330613	55836425	Rat
2303627	Vencon8	Ventilatory control QTL 8		0.001	respiration trait (VT:0001943)	tidal volume (CMO:0000222)	17	4528038	49528038	Rat
70184	BpQTLcluster14	Blood pressure QTL cluster 14	3.38		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	1	31990913	Rat
2303561	Bw91	Body weight QTL 91	2		body mass (VT:0001259)	body weight (CMO:0000012)	17	8868462	53868462	Rat
1582258	Bw76	Body weight QTL 76	4.6	0.0005	body mass (VT:0001259)	body weight (CMO:0000012)	17	9201365	23653323	Rat
631207	Niddm41	Non-insulin dependent diabetes mellitus QTL 41			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	17	1	37830672	Rat
1582199	Insul5	Insulin level QTL 5	3.4	0.0119	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	17	9201365	23653323	Rat
1354596	Bw32	Body weight QTL 32	4.5		body mass (VT:0001259)	body weight (CMO:0000012)	17	4299130	60781592	Rat
1354662	Rf49	Renal function QTL 49	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	17	1	69599340	Rat
2293648	Bmd31	Bone mineral density QTL 31	4.5	0.0001	femur size trait (VT:1000369)	femoral neck cortical cross-sectional area (CMO:0001702)	17	4354487	27028127	Rat
1354658	Spl8	Serum phospholipid level QTL 8	3.8		blood VLDL phospholipid amount (VT:0010507)	blood very low density lipoprotein phospholipid level (CMO:0001571)	17	1	60781592	Rat
1354659	Scl68	Serum cholesterol level QTL 68	3.9		blood VLDL cholesterol amount (VT:0005144)	blood very low density lipoprotein cholesterol level (CMO:0000648)	17	15781592	60781592	Rat
1582241	Bw70	Body weight QTL 70	4.6	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	17	9201365	23653323	Rat
1582245	Bw73	Body weight QTL 73	4.6	0.0004	body mass (VT:0001259)	body weight (CMO:0000012)	17	9201365	23653323	Rat

Markers in Region

BF403835

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	23,138,000 - 23,138,152 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	22,832,924 - 22,833,075	NCBI	Rnor6.0
Rnor_5.0	17	24,806,293 - 24,806,444	UniSTS	Rnor5.0
RGSC_v3.4	17	29,025,099 - 29,025,250	UniSTS	RGSC3.4
Celera	17	22,810,054 - 22,810,205	UniSTS
RH 3.4 Map	17	280.3	UniSTS
Cytogenetic Map	17	p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001008774	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095875	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY310151	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000046157 ⟹ ENSRNOP00000047176

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	23,137,718 - 23,170,248 (-)	Ensembl
Rnor_6.0 Ensembl	17	22,832,641 - 22,863,966 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000099312 ⟹ ENSRNOP00000091444

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	23,131,456 - 23,170,248 (-)	Ensembl

RefSeq Acc Id:

NM_001008774 ⟹ NP_001008774

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	23,343,476 - 23,375,320 (-)	NCBI
mRatBN7.2	17	23,137,718 - 23,169,563 (-)	NCBI
Rnor_6.0	17	22,832,641 - 22,863,966 (-)	NCBI
Rnor_5.0	17	24,806,010 - 24,837,335 (-)	NCBI
RGSC_v3.4	17	29,024,816 - 29,056,718 (-)	RGD
Celera	17	22,809,771 - 22,841,580 (-)	RGD

Sequence:

show sequence

ATGAGGGCGGAGGGCGCCGACCACTCGATGATCAACCTGTCGGTGCAGCAGGTCCTGAGCCTCT
GGGCCCATGGCACGGTGCTGAGGAACCTCACGGAGATGTGGTATTGGATCTTCCTCTGGGCTCT
CTTCTCCTCTCTGTTTGTGCACGGTGCTGCAGGCGTGCTGATGTTTGTGATGCTCCAGCGGCAC
AGGCAGGGCAGAGTGCTCTCCATCATCGCCGTCAGCATCGGCTTCCTGGCCTCCGTAACCGGAG
CAATGATTACTAGTGCAGCAGTGGCTGGCATCTACAGAGTGGCTGGGAAGAACATGGCCCCCCT
GGAAGCCCTGGTGTGGGGTGTGGGGCAGACTGTACTGACACTTATCATCTCCTTTTCAAGGATC
CTCGCAACACTTTGAGTTCTGAGGGAATGTCTTCTTGACTAAGGAAATGGGTGTACAGATTCCC
GGAAGTGCAGTGCTAACCAGCTGAAATGAAGTGGTACAAGCAGGGATCCAGCAAGTCAAAACCT
AGGGAAGACCCTGAGCTGTGTGGAAAGCCTGCCCTCTGGCGTCCAAGCGATTGCACTACCGCAC
TGCACCTTACGTGCCTCCATCCCAGGCAAGGTGCAAGAGACACTATGTGAAGCCGCAAGAAAGA
GCACCTTGTTTAGCTGCCAATCAGGTTAACATTGGTGTTGAAATCATCGTTCTCAACAGTGTTG
TGTTAAGTTACAGAAACGTTTTGAGATTGATCTATGTGCCAAACTTTCCTTTCTGTTAACATTG
ATCATGTGACAGTTTGCAAGTGTAGATGTAGGGTGAGTGCTGTGAATATACTTGACATGGATTC
AGGTAACGTAGTCAGGCTTTGTTTTGTTATGTTAACTCCCATGTGAATGTCAGATACTGAGCTT
TCAATACTAAGGAAGGTTTGGTTTTAAAGCTGAGTGTTTCTGGGA

hide sequence

RefSeq Acc Id:

XM_039095875 ⟹ XP_038951803

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	23,336,914 - 23,375,707 (-)	NCBI
mRatBN7.2	17	23,131,151 - 23,169,946 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001008774	(Get FASTA)	NCBI Sequence Viewer
	XP_038951803	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAP78759	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000047176.3
	ENSRNOP00000091444.1
	ENSRNOP00055010652
	ENSRNOP00060013011
	ENSRNOP00065009523
GenBank Protein	Q7TQ79	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001008774 ⟸ NM_001008774
- UniProtKB:	Q7TQ79 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MRAEGADHSMINLSVQQVLSLWAHGTVLRNLTEMWYWIFLWALFSSLFVHGAAGVLMFVMLQRH RQGRVLSIIAVSIGFLASVTGAMITSAAVAGIYRVAGKNMAPLEALVWGVGQTVLTLIISFSRI LATL hide sequence

Ensembl Acc Id:

ENSRNOP00000047176 ⟸ ENSRNOT00000046157

RefSeq Acc Id:	XP_038951803 ⟸ XM_039095875
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6ARP2 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000091444 ⟸ ENSRNOT00000099312

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q7TQ79-F1-model_v2	AlphaFold	Q7TQ79	1-132	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1561506	AgrOrtholog
BioCyc Gene	G2FUF-9762	BioCyc
Ensembl Genes	ENSRNOG00000031495	Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00055007891	UniProtKB/Swiss-Prot
	ENSRNOG00060009866	UniProtKB/Swiss-Prot
	ENSRNOG00065008172	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000046157.5	UniProtKB/Swiss-Prot
	ENSRNOT00000099312.1	UniProtKB/TrEMBL
	ENSRNOT00055013276	UniProtKB/Swiss-Prot
	ENSRNOT00060016649	UniProtKB/Swiss-Prot
	ENSRNOT00065012938	UniProtKB/Swiss-Prot
InterPro	Transmembrane_pr_170	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:361230	UniProtKB/Swiss-Prot
NCBI Gene	361230	ENTREZGENE
PANTHER	PTHR22779	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TRANSMEMBRANE PROTEIN 170B	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Tmemb_170	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Tmem170b	PhenoGen
RatGTEx	ENSRNOG00000031495	RatGTEx
	ENSRNOG00055007891	RatGTEx
	ENSRNOG00060009866	RatGTEx
	ENSRNOG00065008172	RatGTEx
UniProt	A0A8I6ARP2	ENTREZGENE, UniProtKB/TrEMBL
	Q7TQ79	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-10-30	Tmem170b	transmembrane protein 170B	LOC361230	Ac1258	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	LOC361230	Ac1258			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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