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Gene: Edem3 (ER degradation enhancing alpha-mannosidase like protein 3) Rattus norvegicus

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Symbol:

Edem3

Name:

ER degradation enhancing alpha-mannosidase like protein 3

RGD ID:

1561496

Description:

Predicted to enable mannosyl-oligosaccharide 1,2-alpha-mannosidase activity. Predicted to be involved in endoplasmic reticulum unfolded protein response and ubiquitin-dependent glycoprotein ERAD pathway. Predicted to act upstream of or within glycoprotein catabolic process and proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in endoplasmic reticulum lumen. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIv. Orthologous to human EDEM3 (ER degradation enhancing alpha-mannosidase like protein 3); PARTICIPATES IN Endoplasmic Reticulum-associated degradation pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

ER degradation enhancer, mannosidase alpha-like 3; ER degradation-enhancing alpha-mannosidase-like 3; ER degradation-enhancing alpha-mannosidase-like protein 3; LOC289085; RGD1561496; similar to 2310050N11Rik protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	66,403,022 - 66,470,496 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	66,408,590 - 66,472,270 (+)	Ensembl				GRCr8
mRatBN7.2	13	63,858,282 - 63,920,538 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	63,858,716 - 63,920,523 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	66,467,638 - 66,526,178 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	67,745,616 - 67,804,712 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	65,002,139 - 65,060,678 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	69,135,095 - 69,197,708 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	69,135,128 - 69,199,511 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	74,109,574 - 74,172,190 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	66,653,931 - 66,712,432 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	63,782,992 - 63,841,218 (+)	NCBI		Celera
Cytogenetic Map	13	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

congenital disorder of glycosylation type IIv (ISO)

Dwarfism (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-tribromophenol (ISO)

2-hydroxypropanoic acid (ISO)

2-methylcholine (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3-chloropropane-1,2-diol (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

acetamide (EXP)

aconitic acid (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

Butylbenzyl phthalate (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (ISO)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

dioxygen (ISO)

endosulfan (ISO)

enzalutamide (ISO)

gentamycin (EXP)

glycidol (EXP)

gold atom (ISO)

gold(0) (ISO)

hydrogen peroxide (ISO)

indometacin (ISO)

ivermectin (ISO)

methapyrilene (EXP)

N(gamma)-nitro-L-arginine methyl ester (ISO)

nickel atom (ISO)

nickel dichloride (ISO)

nickel sulfate (ISO)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

potassium chromate (ISO)

propiconazole (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

sodium arsenite (ISO)

sodium fluoride (ISO)

streptozocin (ISO)

tetrachloromethane (EXP,ISO)

titanium dioxide (ISO)

valproic acid (EXP,ISO)

vinclozolin (EXP)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

carbohydrate metabolic process (IEA)

endoplasmic reticulum mannose trimming (IEA,ISO)

endoplasmic reticulum unfolded protein response (IBA)

ERAD pathway (IEA,ISO)

glycoprotein catabolic process (ISO)

proteasome-mediated ubiquitin-dependent protein catabolic process (ISO)

response to unfolded protein (IEA)

ubiquitin-dependent glycoprotein ERAD pathway (IBA)

Cellular Component

endoplasmic reticulum (IBA,IEA)

endoplasmic reticulum lumen (ISO)

endoplasmic reticulum quality control compartment (IEA)

membrane (IEA)

Molecular Function

calcium ion binding (IEA)

hydrolase activity (IEA)

hydrolase activity, acting on glycosyl bonds (IEA)

mannosyl-oligosaccharide 1,2-alpha-mannosidase activity (IBA,IEA,ISO)

metal ion binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

Endoplasmic Reticulum-associated degradation pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:16431915	PMID:25092655

Genomics

Comparative Map Data

Edem3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	66,403,022 - 66,470,496 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	66,408,590 - 66,472,270 (+)	Ensembl				GRCr8
mRatBN7.2	13	63,858,282 - 63,920,538 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	63,858,716 - 63,920,523 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	66,467,638 - 66,526,178 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	67,745,616 - 67,804,712 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	65,002,139 - 65,060,678 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	69,135,095 - 69,197,708 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	69,135,128 - 69,199,511 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	74,109,574 - 74,172,190 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	66,653,931 - 66,712,432 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	63,782,992 - 63,841,218 (+)	NCBI		Celera
Cytogenetic Map	13	q21	NCBI

EDEM3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	184,690,237 - 184,754,858 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	184,690,237 - 184,754,907 (-)	Ensembl			hg38	GRCh38
GRCh37	1	184,659,371 - 184,723,992 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	182,926,260 - 182,990,327 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	181,391,294 - 181,455,361	NCBI
Celera	1	157,770,616 - 157,835,009 (-)	NCBI		Celera
Cytogenetic Map	1	q25.3	NCBI
HuRef	1	155,895,030 - 155,959,449 (-)	NCBI		HuRef
CHM1_1	1	186,082,157 - 186,146,571 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	184,053,426 - 184,118,046 (-)	NCBI		T2T-CHM13v2.0

Edem3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	151,631,099 - 151,698,079 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	151,631,122 - 151,697,802 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	151,755,344 - 151,822,328 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	151,755,371 - 151,822,051 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	153,602,504 - 153,669,458 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	153,517,592 - 153,584,546 (+)	NCBI		MGSCv36	mm8
Celera	1	154,180,540 - 154,247,550 (+)	NCBI		Celera
Cytogenetic Map	1	G2	NCBI
cM Map	1	64.34	NCBI

Edem3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	23,329,400 - 23,401,281 (-)	Ensembl
ChiLan1.0	NW_004955406	23,329,400 - 23,401,282 (-)	NCBI	ChiLan1.0	ChiLan1.0

EDEM3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	64,956,321 - 65,029,915 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	64,642,899 - 64,713,341 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	160,217,526 - 160,281,785 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	164,372,977 - 164,436,977 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	164,372,977 - 164,436,977 (-)	Ensembl			panPan2	panpan1.1

EDEM3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	17,918,902 - 17,991,270 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	17,922,334 - 17,991,596 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	17,504,061 - 17,576,419 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	17,655,246 - 17,725,323 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	17,654,411 - 17,725,335 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	17,561,130 - 17,633,489 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	17,669,748 - 17,742,056 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	17,802,533 - 17,872,533 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Edem3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	87,506,255 - 87,578,201 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936481	5,352,956 - 5,424,944 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936481	5,352,964 - 5,424,944 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

EDEM3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	125,908,864 - 125,983,029 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	9	125,908,861 - 125,983,073 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	138,358,619 - 138,428,940 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

EDEM3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	44,619,717 - 44,688,794 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	44,619,861 - 44,685,227 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666055	45,831,717 - 45,900,169 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Edem3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624814	8,838,997 - 8,922,936 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624814	8,839,016 - 8,924,161 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Edem3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	31,188,257 - 31,247,566 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Edem3
677 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	27
Count of miRNA genes:	24
Interacting mature miRNAs:	26
Transcripts:	ENSRNOT00000017858
Prediction methods:	Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1298066	Bp159	Blood pressure QTL 159		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	48639634	93639634	Rat
10755495	Bp387	Blood pressure QTL 387	3.78		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37216241	90057603	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	38975045	103588154	Rat
70220	Bp55	Blood pressure QTL 55	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
71119	Thym2	Thymus enlargement QTL 2	3.8		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	13	48749814	87285480	Rat
61391	Bp5	Blood pressure QTL 5	5.6		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	24853925	69853925	Rat
4889861	Pur29	Proteinuria QTL 29	13.8	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	39968211	83286298	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	7421791	87286911	Rat
61340	Bp25	Blood pressure QTL 25	4.2	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37087983	82087983	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
1549897	Stresp12	Stress response QTL 12	3.35		stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	13	40983585	85983585	Rat
724564	Uae11	Urinary albumin excretion QTL 11	5.7		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	13	47354258	94285672	Rat
738027	Lnnr6	Liver neoplastic nodule remodeling QTL 6	3.3		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	65613454	109350286	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
738026	Lnnr5	Liver neoplastic nodule remodeling QTL 5	3.29		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	62424592	88113509	Rat
1558644	Cm45	Cardiac mass QTL 45	3.6	0.002	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	13	26244808	71244808	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	13	33794096	78794096	Rat
61349	Bp31	Blood pressure QTL 31	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
1576318	Schws5	Schwannoma susceptibility QTL 5		0.0351	nervous system integrity trait (VT:0010566)	post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)	13	64497900	109350286	Rat
2303563	Bw89	Body weight QTL 89	6		body mass (VT:0001259)	body weight (CMO:0000012)	13	34834947	79834947	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
12879477	Bp401	Blood pressure QTL 401			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	39814726	84814726	Rat
1331750	Bp220	Blood pressure QTL 220	2.98		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	39968211	84968211	Rat
6893338	Cm76	Cardiac mass QTL 76	0	0.99	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	13	26244808	71244808	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	64375743	109350286	Rat
11530006	Niddm72	Non-insulin dependent diabetes mellitus QTL 72		0.001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	38286298	83286298	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191671	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598702	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090448	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090449	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090450	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272099	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000017858 ⟹ ENSRNOP00000017858

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	66,408,590 - 66,470,502 (+)	Ensembl
mRatBN7.2 Ensembl	13	63,858,716 - 63,919,265 (+)	Ensembl
Rnor_6.0 Ensembl	13	69,135,128 - 69,199,511 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115520 ⟹ ENSRNOP00000095995

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	66,408,596 - 66,470,500 (+)	Ensembl
mRatBN7.2 Ensembl	13	63,858,716 - 63,920,523 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000127738 ⟹ ENSRNOP00000104197

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	66,408,603 - 66,472,270 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000128784 ⟹ ENSRNOP00000109021

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	66,408,600 - 66,467,726 (+)	Ensembl

RefSeq Acc Id:

NM_001191671 ⟹ NP_001178600

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	66,408,695 - 66,467,144 (+)	NCBI
mRatBN7.2	13	63,858,716 - 63,917,165 (+)	NCBI
Rnor_6.0	13	69,135,529 - 69,194,335 (+)	NCBI
Rnor_5.0	13	74,109,574 - 74,172,190 (+)	NCBI
Celera	13	63,782,992 - 63,841,218 (+)	NCBI

Sequence:

show sequence

GCCAGCCTCACCCCACAGCCGGCCCTCGACACGGCTCGCAGCCTCCTCGGCGCCGCCATCCCGC
GATGTGGCCCACCGTGCGGGTGTAGCAGCTGCGCGTGCGCGGAACCGCGGGGCCATGAGCGAAG
CCGGCGGCGGCCGGGGCTGTGGGTGCCGGGTCCCCCAGCGAGCGTCATGGAGCCTGGTGGCAGC
GACGGCCGCGCTCTATCTGATGTTGGCCACGACCGTGTGCACGGCAGGGGCCGCGCCCATGAGT
AGGGAAGAGAAGCAGAAGCTTGGAAATCAAGTCCTGGAAATGTTTGATCACGCTTACGGCAACT
ATATGGAACATGCCTACCCAGCTGATGAACTCATGCCTTTAACCTGTCGAGGTCGTGTCAGAGG
CCAGGAGCCAAGCCGGGGTGACGTGGATGATGCCTTGGGAAAGTTCTCCCTAACACTGATCGAT
TCTTTGGACACTCTTGTGGTATTAAACAAAACTAAGGAATTTGAAGATGCAGTGAGAAAAGTTT
TAAGGGATGTTAATCTAGATAATGATGTAGTTGTTTCAGTCTTTGAAACAAACATCAGAGTTCT
TGGGGGTCTTTTGGGTGGACACTCGCTGGCAATCATGCTGAAGGAAAAAGGGGAATACATGCAG
TGGTATAACGACGAGCTTCTCCAAATGGCAAAGCAGCTGGGTTACAAGCTCCTTCCAGCTTTCA
ACACTACCAGTGGCCTTCCATATCCCAGGATTAATTTAAAGTTTGGCATCAGAAAACCGGAAGC
CCGGACGGGAACTGAGACGGACACCTGCACGGCCTGTGCAGGCACCTTGATCCTTGAGTTTGCT
GCATTGAGTCGGTTCACAGGAGCTACAGTATTCGAGGAATATGCAAGAAAAGCTCTTGATTTTC
TCTGGGAGAAAAGACAGCGAAGTAGCAATTTAGTAGGCGTGACTATCAATATTCATACTGGAGA
CTGGGTGCGCAAAGACAGTGGAGTTGGAGCAGGGATCGACTCATATTATGAGTATCTGTTGAAA
GCCTATGTCTTGCTCGGAGATGACAGTTTTCTGGAAAGATTTAATACACATTATGATGCCATAA
TGAGGTATATTAGCCAGCCCCCTCTCCTGCTCGATGTGCATATCCACAAACCAATGCTCAATGC
CCGGACCTGGATGGACGCACTGCTTGCCTTCTTTCCAGGTTTGCAGGTTTTAAAGGGTGATATT
AGACCTGCTATTGAAACTCATGAAATGTTATACCAGGTGATTAAAAAACACAACTTCCTACCAG
AGGCATTTACTACAGATTTCAGGGTTCACTGGGCTCAGCACCCTCTAAGGCCAGAGTTTGCAGA
GAGTACCTACTTCTTATATAAGGCTACAGGAGACCCTTACTACCTTGAAGTAGGGAAAACACTT
ATTGAAAATTTGAATAAATACGCTCGAGTGCCTTGCGGATTTGCTGCCATGAAGGATGTTCGCA
CTGGGAGTCATGAGGACAGAATGGATTCGTTCTTCTTGGCTGAAATGTTCAAATATCTGTACCT
GTTATTTGCTGATAAAGAAGACATTATTTTTGACATAGAAGACTATATCTTTACAACAGAGGCT
CATCTGTTACCTCTTTGGCTTTCTACCACAAACCGAAACATCTCGAAGAAGAACACAACCTCAG
AATACACAGAACTGGATGATAGTAACTTTGATTGGACTTGTCCAAACACGCAGATTCTTTTTCC
TAATGATCCATTGTATGCCCAGAGCATCCGTGAACCCTTGAAAAACGTGGTGGATAAGAGCTGT
CCAAGAGGCATCATCAGAGTAGAGGAGAGTTTCAGAAGTGGAGCTAAGCCTCCTCTGAGAGCCA
GAGATTTTATGGCCACTAACCCTGAACATTTAGAAATCCTGAAGAAGATGGGGGTGAGTTTGAT
TCACCTCAAAGATGGGCGAGTCCAGCTGGTCCAACATGCAATCCAAGCTGCGAGTTCAGTTGAT
GCTGAGGACGGGTTGCGGTTCATGCAGGAGATGATAGAGTTGTCCAGTCAGCAACAGAAGGAGC
AGCAGCTGCCTCCTCGAGCTGTACAGATTATCTCCCACCCATTTTTTGGCAGGGTAGTCTTAAC
TGCTGGACCAGCTCAGTTTGGGCTGGATCTGTCTAAACACAAAGAGACAAGAGGATTTGTTGCA
AGCAGTAAACCATATAATGGCTGTTCGGAGCTCACTAACCCTGAGGCAGTGATGGGAAAAATTG
CCTTGATACAAAGAGGACAGTGCATGTTTGCAGAAAAGGCTCGAAACATCCAGAATGCTGGCGC
CATCGGTGGCATTGTGATTGATGACAATGAGGGGAGCAGCAGTGACACAGCCCCCCTGTTCCAG
ATGGCTGGCGACGGGAAAGACACAGACGACATCAAGATCCCCATGCTGTTCCTGTTCAGCAAGG
AAGGCAGCATCATCTTGGACGCCATCCGTGAGCACGAGCAGGTGGAGGTGCTCCTTTCTGACAA
AGCGAGAGACCGAGATCCTGAGGTGGAAAATGAAGACCAGCCGTCTTCTGAAAACGACTCTCAG
AATCAAAGTGCAGAGCAGATGCTGCCACTTCCTCAGACAGTCGGCTTGGCTGATCAGGAGAGCC
CTGGAAACCCTCTGGAGTCTCCCTCAGAGCCACCATCGCCAGCAGACAGTGAAGAGGCTGCGGG
CTTTGCGCCTTCTGAACAGATCTCTAGCCCCACAGAGACCCAGGAGACGGCAGGTCTTGATGGT
GAGTGCACAGACTTAGATAACCAGCTTCAAGATCAACCCGAAACCGAGGAAGACCCCAGTCCGA
ACGTCAGCTGGGGTACGAAGGCCCAGCCTATGGACTCCATACTAGCAGACTGGAATGAAGACAT
AGAAGCATTTGAAATGATGGAGAAGGACGAACTATGA

hide sequence

RefSeq Acc Id:

XM_006249985 ⟹ XP_006250047

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	66,403,022 - 66,470,496 (+)	NCBI
mRatBN7.2	13	63,858,282 - 63,920,538 (+)	NCBI
Rnor_6.0	13	69,135,095 - 69,197,708 (+)	NCBI
Rnor_5.0	13	74,109,574 - 74,172,190 (+)	NCBI

Sequence:

show sequence

GGGACTACAAGTCCCAGAATGCAGGGCGCTACTAGGCAGAAATTTAGCAAGGCGCCTGCGCGTA
GGGCTGTAGGCAAGCCGGAGGAAGCGGTGCACTTTGGGACTAGTAGTCCCCAGGTGGCAACTCC
TGGGGTCGGAGGTGGGTCGAAGGGACAGCTCCTTGCCCAGTCCCTCCTTTTGTCCACGTCCCGC
TTCTCTTGGCCAATGGCAGGTCCTGTAGCTGCGGCCAGCCCCCCTCCAAGGCTGTCTCCATTGG
TCCCGAGGCTATCCCACTGCAGCTCTACCCGGAAGTAGCCGTGGGAAGGCGGTTTCCTAGACTA
CGACACCGGAAAGCTGGGGGCGGTGCTCCGAGCCGTGGAGGGCGGAGGGTGGTGGCAGCGCTGG
CGCTGGGGACCGGCTCGGTGGCTTCGGCAAACAGTTTGGCGCCGGCGGCCGCCAGCCTCACCCC
ACAGCCGGCCCTCGACACGGCTCGCAGCCTCCTCGGCGCCGCCATCCCGCGATGTGGCCCACCG
TGCGGGTGTAGCAGCTGCGCGTGCGCGGAACCGCGGGGCCATGAGCGAAGCCGGCGGCGGCCGG
GGCTGTGGGTGCCGGGTCCCCCAGCGAGCGTCATGGAGCCTGGTGGCAGCGACGGCCGCGCTCT
ATCTGATGTTGGCCACGACCGTGTGCACGGCAGGGGCCGCGCCCATGAGTAGGGAAGAGAAGCA
GAAGCTTGGAAATCAAGTCCTGGAAATGTTTGATCACGCTTACGGCAACTATATGGAACATGCC
TACCCAGCTGATGAACTCATGCCTTTAACCTGTCGAGGTCGTGTCAGAGGCCAGGAGCCAAGCC
GGGGTGACGTGGATGATGCCTTGGGAAAGTTCTCCCTAACACTGATCGATTCTTTGGACACTCT
TGTGGTATTAAACAAAACTAAGGAATTTGAAGATGCAGTGAGAAAAGTTTTAAGGGATGTTAAT
CTAGATAATGATGTAGTTGTTTCAGTCTTTGAAACAAACATCAGAGTTCTTGGGGGTCTTTTGG
GTGGACACTCGCTGGCAATCATGCTGAAGGAAAAAGGGGAATACATGCAGTGGTATAACGACGA
GCTTCTCCAAATGGCAAAGCAGCTGGGTTACAAGCTCCTTCCAGCTTTCAACACTACCAGTGGC
CTTCCATATCCCAGGATTAATTTAAAGTTTGGCATCAGAAAACCGGAAGCCCGGACGGGAACTG
AGACGGACACCTGCACGGCCTGTGCAGGCACCTTGATCCTTGAGTTTGCTGCATTGAGTCGGTT
CACAGGAGCTACAGTATTCGAGGAATATGCAAGAAAAGCTCTTGATTTTCTCTGGGAGAAAAGA
CAGCGAAGTAGCAATTTAGTAGGCGTGACTATCAATATTCATACTGGAGACTGGGTGCGCAAAG
ACAGTGGAGTTGGAGCAGGGATCGACTCATATTATGAGTATCTGTTGAAAGCCTATGTCTTGCT
CGGAGATGACAGTTTTCTGGAAAGATTTAATACACATTATGATGCCATAATGAGGTATATTAGC
CAGCCCCCTCTCCTGCTCGATGTGCATATCCACAAACCAATGCTCAATGCCCGGACCTGGATGG
ACGCACTGCTTGCCTTCTTTCCAGGTTTGCAGGTTTTAAAGGGTGATATTAGACCTGCTATTGA
AACTCATGAAATGTTATACCAGGTGATTAAAAAACACAACTTCCTACCAGAGGCATTTACTACA
GATTTCAGGGTTCACTGGGCTCAGCACCCTCTAAGGCCAGAGTTTGCAGAGAGTACCTACTTCT
TATATAAGGCTACAGGAGACCCTTACTACCTTGAAGTAGGGAAAACACTTATTGAAAATTTGAA
TAAATACGCTCGAGTGCCTTGCGGATTTGCTGCCATGAAGGATGTTCGCACTGGGAGTCATGAG
GACAGAATGGATTCGTTCTTCTTGGCTGAAATGTTCAAATATCTGTACCTGTTATTTGCTGATA
AAGAAGACATTATTTTTGACATAGAAGACTATATCTTTACAACAGAGGCTCATCTGTTACCTCT
TTGGCTTTCTACCACAAACCGAAACATCTCGAAGAAGAACACAACCTCAGAATACACAGAACTG
GATGATAGTAACTTTGATTGGACTTGTCCAAACACGCAGATTCTTTTTCCTAATGATCCATTGT
ATGCCCAGAGCATCCGTGAACCCTTGAAAAACGTGGTGGATAAGAGCTGTCCAAGAGGCATCAT
CAGAGTCAGAGAGGAGAGTTTCAGAAGTGGAGCTAAGCCTCCTCTGAGAGCCAGAGATTTTATG
GCCACTAACCCTGAACATTTAGAAATCCTGAAGAAGATGGGGGTGAGTTTGATTCACCTCAAAG
ATGGGCGAGTCCAGCTGGTCCAACATGCAATCCAAGCTGCGAGTTCAGTTGATGCTGAGGACGG
GTTGCGGTTCATGCAGGAGATGATAGAGTTGTCCAGTCAGCAACAGAAGGAGCAGCAGCTGCCT
CCTCGAGCTGTACAGATTATCTCCCACCCATTTTTTGGCAGGGTAGTCTTAACTGCTGGACCAG
CTCAGTTTGGGCTGGATCTGTCTAAACACAAAGAGACAAGAGGATTTGTTGCAAGCAGTAAACC
ATATAATGGCTGTTCGGAGCTCACTAACCCTGAGGCAGTGATGGGAAAAATTGCCTTGATACAA
AGAGGACAGTGCATGTTTGCAGAAAAGGCTCGAAACATCCAGAATGCTGGCGCCATCGGTGGCA
TTGTGATTGATGACAATGAGGGGAGCAGCAGTGACACAGCCCCCCTGTTCCAGATGGCTGGCGA
CGGGAAAGACACAGACGACATCAAGATCCCCATGCTGTTCCTGTTCAGCAAGGAAGGCAGCATC
ATCTTGGACGCCATCCGTGAGCACGAGCAGGTGGAGGTGCTCCTTTCTGACAAAGCGAGAGACC
GAGATCCTGAGGTGGAAAATGAAGACNNNNNNNNNNNNNNNNNNGACTCTCAGAATCAAAGTGC
AGAGCAGATGCTGCCACTTCCTCAGACAGTCGGCTTGGCTGATCAGGAGAGCCCTGGAAACCCT
CTGGAGTCTCCCTCAGAGCCACCATCGCCAGCAGACAGTGAAGAGGCTGCGGGCTTTGCGCCTT
CTGAACAGATCTCTAGCCCCACAGAGACCCAGGAGACGGCAGGTCTTGATGGTGAGTGCACAGA
CTTAGATAACCAGCTTCAAGATCAACCCGAAACCGAGGAAGACCCCAGTCCGAACGTCAGCTGG
GGTACGAAGGCCCAGCCTATGGACTCCATACTAGCAGACTGGAATGAAGACATAGAAGCATTTG
AAATGATGGAGAAGGACGAACTATGACTCTCTGTAAAGTGTCTGGTGGTAGATATTTAAAAAGA
AGAGGTAAACTGGTTTTCAACACCCTGTACCAGGCAGGCTCTCCTGGGAGGCTCCGAGCATTGC
TCGAGCACGTTCTGACTAGGGTAAGTAGTTACCATAGGAATCTGGAGCATGCTGTGTTAGAGCT
GACCTCACCGAAACGGTCCCATCCAAAGTGGAAACTCACAACCCCTCAAATGGTGGTACGCATA
ACCTGCAGCTCCCTGGCCAGGGAAAGATGACTGGCCATTCCTGGGTAAACAAGAAACGAAGTCG
GCCATGGGAAGTGGGAACAAGAGTCAGTGCAGCTTTCTAACCGAAGGGAGTTTCACTGCCTTAG
GGTTGGGGTCGGAAGCCCTCGGGGAAGATGTGAGTGAGTGTGTGGCATTGTGGCTTTGCTGCCT
TCACAGGAACACTCTAAGTGACCCACGGTCATGAAGCAGATGCATTCACGGTAACAACAGCTTC
TGCCATCGCTCTTACCTGCTTCAGTCAGTGACCTATGGCCAAGACAGTCGACTTGATTTCTTTT
CCTCTCCCAACAACGACCTTAGCATTTAAACCAAAGGTGAAGCCAGTATACTTTTTCCATAGGT
CTCCATAAAAACCCACTATGGGGCCAGGAAGAGGGTCCTAGAGATATTGTGGAAGTTGGTTGCT
TAATGCTCGGGATAAAGAGAAGGAGGAACTGTAATGTTGCAATATCAGCTTCCCAATGGGCCGC
CATGGGGGAAGCAATGACTACTCTAAATGGAAGTCAGCATTAGCTGCTTGTGGGTAGATTAGAA
GTCTTTTCTAGTTCATTTCTCTAAGGTGGTTATCTAGCCATCAGCCTTACTCCATCCCATGTTT
AGTATGCAGTTTGAGACCGAAGGCTCATCTCCAAGCCCTGTCCCATTTCCCTATCTTACAGAGC
CATGAGAAACCATGGTAGTAGTCTGTATTCCTGGGGTGACTACTGTCTTTCTCCTTTGAAGCTG
GAGTCTGTCACATTTTCTGTTAAATCATGGGTTTAGTTTTGTTTTAACAAATACTCCTTCTGAT
GTGGACTTGAAACTTAGTCTCTGGTGACCTGTGTAAAAACTAAATAGCCATATAAGTAAAAGAA
CAAGATGATTATTTTTTGGGTGTGGCAGTCTGGAGCTTGTCACATTTAATTATTTTTGGTTTTG
CTTATTGATAGTTCTACATTGAAATCATGATTTTATTCATTTTATTTATTTTTAAGCTTATTTT
AATTGCTTCTAAAGGAGTATTTGAGGGACTTAATTTTTACCATGGCATCACACAATAACTTCCC
TCTAAAACATGGTTTTGAGGTACTGAATTACTTAGCCTACATATGGATATGAAAGGCAGCAGTG
CTATGCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACAGTATGACTTAGG
TCCCAGGTAAACCAGCCCTTTTCTATGGGCATGAATACCTGTTCTCAAAAGGTCCAACTAAACC
AAACTGGTCAGTGAGTAATAAGTCTTAGGGAATTCCTGGGGGTGGGGTAGGATGGCACAGCCTT
TATTAACTTAAACCTGACAGCAAAACTGGGTATTTAGTCTCCCTGCATGTGGTTTGGTGCGAGC
AGACAGACCTGCAATCCGGAGTCATGGAAGGTAGATGTGCTTTGTTTCATTTCTCTGCAAAGCT
GGCAAACAGCTGAAGCTTAATTATTTGACTTGATTGATAGGACTGGAGCGGGAGAAACGGAACA
GATGTTCCTCTGAGACTTTGATTACAGAAGCCTTGTGTGGATTGGTTTTGTATTTGTAGCTCAA
AGCCATTGTTGTCCAAATCAAACTCTGCTAAGTTATCAAAGCTATGTATTTTTTTTCCCTTGAG
AACTTAGGGCATAAAGGGGAGCCCATGACACTAGGAAAGCCAGCTTACTGCCACGTGCCATTCC
TCTGGCCACTAGGAGGTGCTGTTGCCCTTCATTGAGGTCTAGATGTACCTATTGATTTGTTTAG
AAAAACCAAATTCTTTAAGACATTTTACTTACTATCTAGAAGGAATAAACTCCGTTTCCCCTAC
TTAAGAAAGGAGCAATATGTTCCCCTTCAGAACACAGCATTCTAACTGACTTTCCATTCATTTT
CGCATTTCACATACTGCCACAAAGTAGTCTTTGAGTTCACTAGAAAATTCCAACAGCATAGTTT
TTTTTTAATATTTTCTTTTCATTGTTGTTGATGTTGTTTGTTAAAAACCTTTCATAGATATTTT
ATTTACTTGCTGAAGATTCAGGGAATTCTGAGACCCTGAGTTTAGAAACATCTGGTCTACCTCA
GTTAAATGTTGACTGCTTAGAAATAGAGCTGAAATGATCACCACAGCCATAAAATGGTTTGACT
AAGAAAGATTTATATAATGTTTACAAACCTGGAATCAAGTCAGATTACCTGAAAGCTAAAGATT
AGGGTTAGAGCAAGTATTTAATTCAGGTATTTTCAAGTCTTAAAACTTGTTTACCTAGTAAAAT
TAGGTGTTTTTTCTCACATAAAAACTCCATTGAAATTATATGCCCTGATTTGCAATATTTTCCC
CATAAAAATTAAATGTGAAAGAATAGTAATTTACTAGGTATGTTTGGGGCGGGATATTTTGTTA
ATAGGTTTTCTTTTTCCTTCTAACCTGTGTAATGAGCTTCCGAAAAGAGTATAACTGTTTTAGA
ACAAATTACTTTGTCATTTTCCTTTCCCTTTTTCTTTACAGTGTTAGGTATTTTTAAATGAAAA
ATTATGCACTCTCTGACTTCAATTTCACTAATGTAATTATTTTCTTGGGAATTCTTTTAGATTT
AAATTACCATCATATAAACCTTTCTTATAGCAAAGCCAGCGTTTGTTTTCTCACCAAACTCCAT
GCCAGACTCATCATAAAGAAAGCTCAGCCTAAGTAATTCAAACAGTGCTTATAGTTTTAGAGGG
AGGGTAGCATTTACTAAATATTCCAGCTGGTTGTTTTATGCACAAGGCTACAGTCAGAACATAG
AAAAAAAAAAACATTCTGTGAATGAAACATTGTATGTTCAGATTTTATAAAAAGACATTTTTAA
AAGCCCAATTTACAGCCGTATATTTTCTTATGATGTAATTTATGAAAAAGCTGTCTGTACTAAC
AGGTGCTGTAACACTACTGTTGTTGGGTTTTATTGTTTGGTGATAAATGTAAACAATATTTCTA
ATGGAAACTATGTACTGTGATGTAAAAGTCTGGGCAAAATGTATATAATCCTTGTATATAATTG
TGTATTTGATTATATTACTGATTGTAAATTTAATAAAACATGTAAATATTCTGGTCTAGTTTTA
AATTTCA

hide sequence

RefSeq Acc Id:

XM_006249986 ⟹ XP_006250048

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	66,403,022 - 66,470,496 (+)	NCBI
mRatBN7.2	13	63,858,282 - 63,920,538 (+)	NCBI
Rnor_6.0	13	69,135,095 - 69,197,708 (+)	NCBI
Rnor_5.0	13	74,109,574 - 74,172,190 (+)	NCBI

Sequence:

show sequence

GGGACTACAAGTCCCAGAATGCAGGGCGCTACTAGGCAGAAATTTAGCAAGGCGCCTGCGCGTA
GGGCTGTAGGCAAGCCGGAGGAAGCGGTGCACTTTGGGACTAGTAGTCCCCAGGTGGCAACTCC
TGGGGTCGGAGGTGGGTCGAAGGGACAGCTCCTTGCCCAGTCCCTCCTTTTGTCCACGTCCCGC
TTCTCTTGGCCAATGGCAGGTCCTGTAGCTGCGGCCAGCCCCCCTCCAAGGCTGTCTCCATTGG
TCCCGAGGCTATCCCACTGCAGCTCTACCCGGAAGTAGCCGTGGGAAGGCGGTTTCCTAGACTA
CGACACCGGAAAGCTGGGGGCGGTGCTCCGAGCCGTGGAGGGCGGAGGGTGGTGGCAGCGCTGG
CGCTGGGGACCGGCTCGGTGGCTTCGGCAAACAGTTTGGCGCCGGCGGCCGCCAGCCTCACCCC
ACAGCCGGCCCTCGACACGGCTCGCAGCCTCCTCGGCGCCGCCATCCCGCGATGTGGCCCACCG
TGCGGGTGTAGCAGCTGCGCGTGCGCGGAACCGCGGGGCCATGAGCGAAGCCGGCGGCGGCCGG
GGCTGTGGGTGCCGGGTCCCCCAGCGAGCGTCATGGAGCCTGGTGGCAGCGACGGCCGCGCTCT
ATCTGATGTTGGCCACGACCGTGTGCACGGCAGGGGCCGCGCCCATGAGTAGGGAAGAGAAGCA
GAAGCTTGGAAATCAAGTCCTGGAAATGTTTGATCACGCTTACGGCAACTATATGGAACATGCC
TACCCAGCTGATGAACTCATGCCTTTAACCTGTCGAGGTCGTGTCAGAGGCCAGGAGCCAAGCC
GGGGTGACGTGGATGATGCCTTGGGAAAGTTCTCCCTAACACTGATCGATTCTTTGGACACTCT
TGTGGTATTAAACAAAACTAAGGAATTTGAAGATGCAGTGAGAAAAGTTTTAAGGGATGTTAAT
CTAGATAATGATGTAGTTGTTTCAGTCTTTGAAACAAACATCAGAGTTCTTGGGGGTCTTTTGG
GTGGACACTCGCTGGCAATCATGCTGAAGGAAAAAGGGGAATACATGCAGTGGTATAACGACGA
GCTTCTCCAAATGGCAAAGCAGCTGGGTTACAAGCTCCTTCCAGCTTTCAACACTACCAGTGGC
CTTCCATATCCCAGGATTAATTTAAAGTTTGGCATCAGAAAACCGGAAGCCCGGACGGGAACTG
AGACGGACACCTGCACGGCCTGTGCAGGCACCTTGATCCTTGAGTTTGCTGCATTGAGTCGGTT
CACAGGAGCTACAGTATTCGAGGAATATGCAAGAAAAGCTCTTGATTTTCTCTGGGAGAAAAGA
CAGCGAAGTAGCAATTTAGTAGGCGTGACTATCAATATTCATACTGGAGACTGGGTGCGCAAAG
ACAGTGGAGTTGGAGCAGGGATCGACTCATATTATGAGTATCTGTTGAAAGCCTATGTCTTGCT
CGGAGATGACAGTTTTCTGGAAAGATTTAATACACATTATGATGCCATAATGAGGTATATTAGC
CAGCCCCCTCTCCTGCTCGATGTGCATATCCACAAACCAATGCTCAATGCCCGGACCTGGATGG
ACGCACTGCTTGCCTTCTTTCCAGGTTTGCAGGTTTTAAAGGGTGATATTAGACCTGCTATTGA
AACTCATGAAATGTTATACCAGGTGATTAAAAAACACAACTTCCTACCAGAGGCATTTACTACA
GATTTCAGGGTTCACTGGGCTCAGCACCCTCTAAGGCCAGAGTTTGCAGAGAGTACCTACTTCT
TATATAAGGCTACAGGAGACCCTTACTACCTTGAAGTAGGGAAAACACTTATTGAAAATTTGAA
TAAATACGCTCGAGTGCCTTGCGGATTTGCTGCCATGAAGGATGTTCGCACTGGGAGTCATGAG
GACAGAATGGATTCGTTCTTCTTGGCTGAAATGTTCAAATATCTGTACCTGTTATTTGCTGATA
AAGAAGACATTATTTTTGACATAGAAGACTATATCTTTACAACAGAGGCTCATCTGTTACCTCT
TTGGCTTTCTACCACAAACCGAAACATCTCGAAGAAGAACACAACCTCAGAATACACAGAACTG
GATGATAGTAACTTTGATTGGACTTGTCCAAACACGCAGATTCTTTTTCCTAATGATCCATTGT
ATGCCCAGAGCATCCGTGAACCCTTGAAAAACGTGGTGGATAAGAGCTGTCCAAGAGGCATCAT
CAGAGTCAGAGAGGAGAGTTTCAGAAGTGGAGCTAAGCCTCCTCTGAGAGCCAGAGATTTTATG
GCCACTAACCCTGAACATTTAGAAATCCTGAAGAAGATGGGGGCTGCGAGTTCAGTTGATGCTG
AGGACGGGTTGCGGTTCATGCAGGAGATGATAGAGTTGTCCAGTCAGCAACAGAAGGAGCAGCA
GCTGCCTCCTCGAGCTGTACAGATTATCTCCCACCCATTTTTTGGCAGGGTAGTCTTAACTGCT
GGACCAGCTCAGTTTGGGCTGGATCTGTCTAAACACAAAGAGACAAGAGGATTTGTTGCAAGCA
GTAAACCATATAATGGCTGTTCGGAGCTCACTAACCCTGAGGCAGTGATGGGAAAAATTGCCTT
GATACAAAGAGGACAGTGCATGTTTGCAGAAAAGGCTCGAAACATCCAGAATGCTGGCGCCATC
GGTGGCATTGTGATTGATGACAATGAGGGGAGCAGCAGTGACACAGCCCCCCTGTTCCAGATGG
CTGGCGACGGGAAAGACACAGACGACATCAAGATCCCCATGCTGTTCCTGTTCAGCAAGGAAGG
CAGCATCATCTTGGACGCCATCCGTGAGCACGAGCAGGTGGAGGTGCTCCTTTCTGACAAAGCG
AGAGACCGAGATCCTGAGGTGGAAAATGAAGACNNNNNNNNNNNNNNNNNNGACTCTCAGAATC
AAAGTGCAGAGCAGATGCTGCCACTTCCTCAGACAGTCGGCTTGGCTGATCAGGAGAGCCCTGG
AAACCCTCTGGAGTCTCCCTCAGAGCCACCATCGCCAGCAGACAGTGAAGAGGCTGCGGGCTTT
GCGCCTTCTGAACAGATCTCTAGCCCCACAGAGACCCAGGAGACGGCAGGTCTTGATGGTGAGT
GCACAGACTTAGATAACCAGCTTCAAGATCAACCCGAAACCGAGGAAGACCCCAGTCCGAACGT
CAGCTGGGGTACGAAGGCCCAGCCTATGGACTCCATACTAGCAGACTGGAATGAAGACATAGAA
GCATTTGAAATGATGGAGAAGGACGAACTATGACTCTCTGTAAAGTGTCTGGTGGTAGATATTT
AAAAAGAAGAGGTAAACTGGTTTTCAACACCCTGTACCAGGCAGGCTCTCCTGGGAGGCTCCGA
GCATTGCTCGAGCACGTTCTGACTAGGGTAAGTAGTTACCATAGGAATCTGGAGCATGCTGTGT
TAGAGCTGACCTCACCGAAACGGTCCCATCCAAAGTGGAAACTCACAACCCCTCAAATGGTGGT
ACGCATAACCTGCAGCTCCCTGGCCAGGGAAAGATGACTGGCCATTCCTGGGTAAACAAGAAAC
GAAGTCGGCCATGGGAAGTGGGAACAAGAGTCAGTGCAGCTTTCTAACCGAAGGGAGTTTCACT
GCCTTAGGGTTGGGGTCGGAAGCCCTCGGGGAAGATGTGAGTGAGTGTGTGGCATTGTGGCTTT
GCTGCCTTCACAGGAACACTCTAAGTGACCCACGGTCATGAAGCAGATGCATTCACGGTAACAA
CAGCTTCTGCCATCGCTCTTACCTGCTTCAGTCAGTGACCTATGGCCAAGACAGTCGACTTGAT
TTCTTTTCCTCTCCCAACAACGACCTTAGCATTTAAACCAAAGGTGAAGCCAGTATACTTTTTC
CATAGGTCTCCATAAAAACCCACTATGGGGCCAGGAAGAGGGTCCTAGAGATATTGTGGAAGTT
GGTTGCTTAATGCTCGGGATAAAGAGAAGGAGGAACTGTAATGTTGCAATATCAGCTTCCCAAT
GGGCCGCCATGGGGGAAGCAATGACTACTCTAAATGGAAGTCAGCATTAGCTGCTTGTGGGTAG
ATTAGAAGTCTTTTCTAGTTCATTTCTCTAAGGTGGTTATCTAGCCATCAGCCTTACTCCATCC
CATGTTTAGTATGCAGTTTGAGACCGAAGGCTCATCTCCAAGCCCTGTCCCATTTCCCTATCTT
ACAGAGCCATGAGAAACCATGGTAGTAGTCTGTATTCCTGGGGTGACTACTGTCTTTCTCCTTT
GAAGCTGGAGTCTGTCACATTTTCTGTTAAATCATGGGTTTAGTTTTGTTTTAACAAATACTCC
TTCTGATGTGGACTTGAAACTTAGTCTCTGGTGACCTGTGTAAAAACTAAATAGCCATATAAGT
AAAAGAACAAGATGATTATTTTTTGGGTGTGGCAGTCTGGAGCTTGTCACATTTAATTATTTTT
GGTTTTGCTTATTGATAGTTCTACATTGAAATCATGATTTTATTCATTTTATTTATTTTTAAGC
TTATTTTAATTGCTTCTAAAGGAGTATTTGAGGGACTTAATTTTTACCATGGCATCACACAATA
ACTTCCCTCTAAAACATGGTTTTGAGGTACTGAATTACTTAGCCTACATATGGATATGAAAGGC
AGCAGTGCTATGCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACAGTATG
ACTTAGGTCCCAGGTAAACCAGCCCTTTTCTATGGGCATGAATACCTGTTCTCAAAAGGTCCAA
CTAAACCAAACTGGTCAGTGAGTAATAAGTCTTAGGGAATTCCTGGGGGTGGGGTAGGATGGCA
CAGCCTTTATTAACTTAAACCTGACAGCAAAACTGGGTATTTAGTCTCCCTGCATGTGGTTTGG
TGCGAGCAGACAGACCTGCAATCCGGAGTCATGGAAGGTAGATGTGCTTTGTTTCATTTCTCTG
CAAAGCTGGCAAACAGCTGAAGCTTAATTATTTGACTTGATTGATAGGACTGGAGCGGGAGAAA
CGGAACAGATGTTCCTCTGAGACTTTGATTACAGAAGCCTTGTGTGGATTGGTTTTGTATTTGT
AGCTCAAAGCCATTGTTGTCCAAATCAAACTCTGCTAAGTTATCAAAGCTATGTATTTTTTTTC
CCTTGAGAACTTAGGGCATAAAGGGGAGCCCATGACACTAGGAAAGCCAGCTTACTGCCACGTG
CCATTCCTCTGGCCACTAGGAGGTGCTGTTGCCCTTCATTGAGGTCTAGATGTACCTATTGATT
TGTTTAGAAAAACCAAATTCTTTAAGACATTTTACTTACTATCTAGAAGGAATAAACTCCGTTT
CCCCTACTTAAGAAAGGAGCAATATGTTCCCCTTCAGAACACAGCATTCTAACTGACTTTCCAT
TCATTTTCGCATTTCACATACTGCCACAAAGTAGTCTTTGAGTTCACTAGAAAATTCCAACAGC
ATAGTTTTTTTTTAATATTTTCTTTTCATTGTTGTTGATGTTGTTTGTTAAAAACCTTTCATAG
ATATTTTATTTACTTGCTGAAGATTCAGGGAATTCTGAGACCCTGAGTTTAGAAACATCTGGTC
TACCTCAGTTAAATGTTGACTGCTTAGAAATAGAGCTGAAATGATCACCACAGCCATAAAATGG
TTTGACTAAGAAAGATTTATATAATGTTTACAAACCTGGAATCAAGTCAGATTACCTGAAAGCT
AAAGATTAGGGTTAGAGCAAGTATTTAATTCAGGTATTTTCAAGTCTTAAAACTTGTTTACCTA
GTAAAATTAGGTGTTTTTTCTCACATAAAAACTCCATTGAAATTATATGCCCTGATTTGCAATA
TTTTCCCCATAAAAATTAAATGTGAAAGAATAGTAATTTACTAGGTATGTTTGGGGCGGGATAT
TTTGTTAATAGGTTTTCTTTTTCCTTCTAACCTGTGTAATGAGCTTCCGAAAAGAGTATAACTG
TTTTAGAACAAATTACTTTGTCATTTTCCTTTCCCTTTTTCTTTACAGTGTTAGGTATTTTTAA
ATGAAAAATTATGCACTCTCTGACTTCAATTTCACTAATGTAATTATTTTCTTGGGAATTCTTT
TAGATTTAAATTACCATCATATAAACCTTTCTTATAGCAAAGCCAGCGTTTGTTTTCTCACCAA
ACTCCATGCCAGACTCATCATAAAGAAAGCTCAGCCTAAGTAATTCAAACAGTGCTTATAGTTT
TAGAGGGAGGGTAGCATTTACTAAATATTCCAGCTGGTTGTTTTATGCACAAGGCTACAGTCAG
AACATAGAAAAAAAAAAACATTCTGTGAATGAAACATTGTATGTTCAGATTTTATAAAAAGACA
TTTTTAAAAGCCCAATTTACAGCCGTATATTTTCTTATGATGTAATTTATGAAAAAGCTGTCTG
TACTAACAGGTGCTGTAACACTACTGTTGTTGGGTTTTATTGTTTGGTGATAAATGTAAACAAT
ATTTCTAATGGAAACTATGTACTGTGATGTAAAAGTCTGGGCAAAATGTATATAATCCTTGTAT
ATAATTGTGTATTTGATTATATTACTGATTGTAAATTTAATAAAACATGTAAATATTCTGGTCT
AGTTTTAAATTTCA

hide sequence

RefSeq Acc Id:

XM_017598702 ⟹ XP_017454191

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	66,403,022 - 66,470,496 (+)	NCBI
mRatBN7.2	13	63,858,282 - 63,920,538 (+)	NCBI
Rnor_6.0	13	69,135,095 - 69,197,708 (+)	NCBI

Sequence:

show sequence

GGGACTACAAGTCCCAGAATGCAGGGCGCTACTAGGCAGAAATTTAGCAAGGCGCCTGCGCGTA
GGGCTGTAGGCAAGCCGGAGGAAGCGGTGCACTTTGGGACTAGTAGTCCCCAGGTGGCAACTCC
TGGGGTCGGAGGTGGGTCGAAGGGACAGCTCCTTGCCCAGTCCCTCCTTTTGTCCACGTCCCGC
TTCTCTTGGCCAATGGCAGGTCCTGTAGCTGCGGCCAGCCCCCCTCCAAGGCTGTCTCCATTGG
TCCCGAGGCTATCCCACTGCAGCTCTACCCGGAAGTAGCCGTGGGAAGGCGGTTTCCTAGACTA
CGACACCGGAAAGCTGGGGGCGGTGCTCCGAGCCGTGGAGGGCGGAGGGTGGTGGCAGCGCTGG
CGCTGGGGACCGGCTCGGTGGCTTCGGCAAACAGTTTGGCGCCGGCGGCCGCCAGCCTCACCCC
ACAGCCGGCCCTCGACACGGCTCGCAGCCTCCTCGGCGCCGCCATCCCGCGATGTGGCCCACCG
TGCGGGTGTAGCAGCTGCGCGTGCGCGGAACCGCGGGGCCATGAGCGAAGCCGGCGGCGGCCGG
GGCTGTGGGTGCCGGGTCCCCCAGCGAGCGTCATGGAGCCTGGTGGCAGCGACGGCCGCGCTCT
ATCTGATGTTGGCCACGACCGTGTGCACGGCAGGGGCCGCGCCCATGAGTAGGGAAGAGAAGCA
GAAGCTTGGAAATCAAGTCCTGGAAATGTTTGATCACGCTTACGGCAACTATATGGAACATGCC
TACCCAGCTGATGAACTCATGCCTTTAACCTGTCGAGGTCGTGTCAGAGGCCAGGAGCCAAGCC
GGGGTGACGTGGATGATGCCTTGGGAAAGTTCTCCCTAACACTGATCGATTCTTTGGACACTCT
TGTGGTATTAAACAAAACTAAGGAATTTGAAGATGCAGTGAGAAAAGTTTTAAGGGATGTTAAT
CTAGATAATGATGTAGTTGTTTCAGTCTTTGAAACAAACATCAGAGTTCTTGGGGGTCTTTTGG
GTGGACACTCGCTGGCAATCATGCTGAAGGAAAAAGGGGAATACATGCAGTGGTATAACGACGA
GCTTCTCCAAATGGCAAAGCAGCTGGGTTACAAGCTCCTTCCAGCTTTCAACACTACCAGTGGC
CTTCCATATCCCAGGATTAATTTAAAGTTTGGCATCAGAAAACCGGAAGCCCGGACGGGAACTG
AGACGGACACCTGCACGGCCTGTGCAGGCACCTTGATCCTTGAGTTTGCTGCATTGAGTCGGTT
CACAGGAGCTACAGTATTCGAGGAATATGCAAGAAAAGCTCTTGATTTTCTCTGGGAGAAAAGA
CAGCGAAGTAGCAATTTAGTAGGCGTGACTATCAATATTCATACTGGAGACTGGGTGCGCAAAG
ACAGTGGAGTTGGAGCAGGGATCGACTCATATTATGAGTATCTGTTGAAAGCCTATGTCTTGCT
CGGAGATGACAGTTTTCTGGAAAGATTTAATACACATTATGATGCCATAATGAGGTATATTAGC
CAGCCCCCTCTCCTGCTCGATGTGCATATCCACAAACCAATGCTCAATGCCCGGACCTGGATGG
ACGCACTGCTTGCCTTCTTTCCAGGTTTGCAGGTTTTAAAGGGTGATATTAGACCTGCTATTGA
AACTCATGAAATGTTATACCAGGTGATTAAAAAACACAACTTCCTACCAGAGGCATTTACTACA
GATTTCAGGGTTCACTGGGCTCAGCACCCTCTAAGGCCAGAGTTTGCAGAGAGTACCTACTTCT
TATATAAGGCTACAGGAGACCCTTACTACCTTGAAGTAGGGAAAACACTTATTGAAAATTTGAA
TAAATACGCTCGAGTGCCTTGCGGATTTGCTGCCATGAAGGATGTTCGCACTGGGAGTCATGAG
GACAGAATGGATTCGTTCTTCTTGGCTGAAATGTTCAAATATCTGTACCTGTTATTTGCTGATA
AAGAAGACATTATTTTTGACATAGAAGACTATATCTTTACAACAGAGGCTCATCTGTTACCTCT
TTGGCTTTCTACCACAAACCGAAACATCTCGAAGAAGAACACAACCTCAGAATACACAGAACTG
GATGATAGTAACTTTGATTGGACTTGTCCAAACACGCAGATTCTTTTTCCTAATGATCCATTGT
ATGCCCAGAGCATCCGTGAACCCTTGAAAAACGTGGTGGATAAGAGCTGTCCAAGAGGCATCAT
CAGAGTAGAGGAGAGTTTCAGAAGTGGAGCTAAGCCTCCTCTGAGAGCCAGAGATTTTATGGCC
ACTAACCCTGAACATTTAGAAATCCTGAAGAAGATGGGGGTGAGTTTGATTCACCTCAAAGATG
GGCGAGTCCAGCTGGTCCAACATGCAATCCAAGCTGCGAGTTCAGTTGATGCTGAGGACGGGTT
GCGGTTCATGCAGGAGATGATAGAGTTGTCCAGTCAGCAACAGAAGGAGCAGCAGCTGCCTCCT
CGAGCTGTACAGATTATCTCCCACCCATTTTTTGGCAGGGTAGTCTTAACTGCTGGACCAGCTC
AGTTTGGGCTGGATCTGTCTAAACACAAAGAGACAAGAGGATTTGTTGCAAGCAGTAAACCATA
TAATGGCTGTTCGGAGCTCACTAACCCTGAGGCAGTGATGGGAAAAATTGCCTTGATACAAAGA
GGACAGTGCATGTTTGCAGAAAAGGCTCGAAACATCCAGAATGCTGGCGCCATCGGTGGCATTG
TGATTGATGACAATGAGGGGAGCAGCAGTGACACAGCCCCCCTGTTCCAGATGGCTGGCGACGG
GAAAGACACAGACGACATCAAGATCCCCATGCTGTTCCTGTTCAGCAAGGAAGGCAGCATCATC
TTGGACGCCATCCGTGAGCACGAGCAGGTGGAGGTGCTCCTTTCTGACAAAGCGAGAGACCGAG
CAGCCATATTAAAAGGTAAAAGGATTCCAAGCTACATTATTAACAGTAATCCTGAGGTGGAAAA
TGAAGACNNNNNNNNNNNNNNNNNNGACTCTCAGAATCAAAGTGCAGAGCAGATGCTGCCACTT
CCTCAGACAGTCGGCTTGGCTGATCAGGAGAGCCCTGGAAACCCTCTGGAGTCTCCCTCAGAGC
CACCATCGCCAGCAGACAGTGAAGAGGCTGCGGGCTTTGCGCCTTCTGAACAGATCTCTAGCCC
CACAGAGACCCAGGAGACGGCAGGTCTTGATGGTGAGTGCACAGACTTAGATAACCAGCTTCAA
GATCAACCCGAAACCGAGGAAGACCCCAGTCCGAACGTCAGCTGGGGTACGAAGGCCCAGCCTA
TGGACTCCATACTAGCAGACTGGAATGAAGACATAGAAGCATTTGAAATGATGGAGAAGGACGA
ACTATGACTCTCTGTAAAGTGTCTGGTGGTAGATATTTAAAAAGAAGAGGTAAACTGGTTTTCA
ACACCCTGTACCAGGCAGGCTCTCCTGGGAGGCTCCGAGCATTGCTCGAGCACGTTCTGACTAG
GGTAAGTAGTTACCATAGGAATCTGGAGCATGCTGTGTTAGAGCTGACCTCACCGAAACGGTCC
CATCCAAAGTGGAAACTCACAACCCCTCAAATGGTGGTACGCATAACCTGCAGCTCCCTGGCCA
GGGAAAGATGACTGGCCATTCCTGGGTAAACAAGAAACGAAGTCGGCCATGGGAAGTGGGAACA
AGAGTCAGTGCAGCTTTCTAACCGAAGGGAGTTTCACTGCCTTAGGGTTGGGGTCGGAAGCCCT
CGGGGAAGATGTGAGTGAGTGTGTGGCATTGTGGCTTTGCTGCCTTCACAGGAACACTCTAAGT
GACCCACGGTCATGAAGCAGATGCATTCACGGTAACAACAGCTTCTGCCATCGCTCTTACCTGC
TTCAGTCAGTGACCTATGGCCAAGACAGTCGACTTGATTTCTTTTCCTCTCCCAACAACGACCT
TAGCATTTAAACCAAAGGTGAAGCCAGTATACTTTTTCCATAGGTCTCCATAAAAACCCACTAT
GGGGCCAGGAAGAGGGTCCTAGAGATATTGTGGAAGTTGGTTGCTTAATGCTCGGGATAAAGAG
AAGGAGGAACTGTAATGTTGCAATATCAGCTTCCCAATGGGCCGCCATGGGGGAAGCAATGACT
ACTCTAAATGGAAGTCAGCATTAGCTGCTTGTGGGTAGATTAGAAGTCTTTTCTAGTTCATTTC
TCTAAGGTGGTTATCTAGCCATCAGCCTTACTCCATCCCATGTTTAGTATGCAGTTTGAGACCG
AAGGCTCATCTCCAAGCCCTGTCCCATTTCCCTATCTTACAGAGCCATGAGAAACCATGGTAGT
AGTCTGTATTCCTGGGGTGACTACTGTCTTTCTCCTTTGAAGCTGGAGTCTGTCACATTTTCTG
TTAAATCATGGGTTTAGTTTTGTTTTAACAAATACTCCTTCTGATGTGGACTTGAAACTTAGTC
TCTGGTGACCTGTGTAAAAACTAAATAGCCATATAAGTAAAAGAACAAGATGATTATTTTTTGG
GTGTGGCAGTCTGGAGCTTGTCACATTTAATTATTTTTGGTTTTGCTTATTGATAGTTCTACAT
TGAAATCATGATTTTATTCATTTTATTTATTTTTAAGCTTATTTTAATTGCTTCTAAAGGAGTA
TTTGAGGGACTTAATTTTTACCATGGCATCACACAATAACTTCCCTCTAAAACATGGTTTTGAG
GTACTGAATTACTTAGCCTACATATGGATATGAAAGGCAGCAGTGCTATGCAGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTACACAGTATGACTTAGGTCCCAGGTAAACCAGCCCT
TTTCTATGGGCATGAATACCTGTTCTCAAAAGGTCCAACTAAACCAAACTGGTCAGTGAGTAAT
AAGTCTTAGGGAATTCCTGGGGGTGGGGTAGGATGGCACAGCCTTTATTAACTTAAACCTGACA
GCAAAACTGGGTATTTAGTCTCCCTGCATGTGGTTTGGTGCGAGCAGACAGACCTGCAATCCGG
AGTCATGGAAGGTAGATGTGCTTTGTTTCATTTCTCTGCAAAGCTGGCAAACAGCTGAAGCTTA
ATTATTTGACTTGATTGATAGGACTGGAGCGGGAGAAACGGAACAGATGTTCCTCTGAGACTTT
GATTACAGAAGCCTTGTGTGGATTGGTTTTGTATTTGTAGCTCAAAGCCATTGTTGTCCAAATC
AAACTCTGCTAAGTTATCAAAGCTATGTATTTTTTTTCCCTTGAGAACTTAGGGCATAAAGGGG
AGCCCATGACACTAGGAAAGCCAGCTTACTGCCACGTGCCATTCCTCTGGCCACTAGGAGGTGC
TGTTGCCCTTCATTGAGGTCTAGATGTACCTATTGATTTGTTTAGAAAAACCAAATTCTTTAAG
ACATTTTACTTACTATCTAGAAGGAATAAACTCCGTTTCCCCTACTTAAGAAAGGAGCAATATG
TTCCCCTTCAGAACACAGCATTCTAACTGACTTTCCATTCATTTTCGCATTTCACATACTGCCA
CAAAGTAGTCTTTGAGTTCACTAGAAAATTCCAACAGCATAGTTTTTTTTTAATATTTTCTTTT
CATTGTTGTTGATGTTGTTTGTTAAAAACCTTTCATAGATATTTTATTTACTTGCTGAAGATTC
AGGGAATTCTGAGACCCTGAGTTTAGAAACATCTGGTCTACCTCAGTTAAATGTTGACTGCTTA
GAAATAGAGCTGAAATGATCACCACAGCCATAAAATGGTTTGACTAAGAAAGATTTATATAATG
TTTACAAACCTGGAATCAAGTCAGATTACCTGAAAGCTAAAGATTAGGGTTAGAGCAAGTATTT
AATTCAGGTATTTTCAAGTCTTAAAACTTGTTTACCTAGTAAAATTAGGTGTTTTTTCTCACAT
AAAAACTCCATTGAAATTATATGCCCTGATTTGCAATATTTTCCCCATAAAAATTAAATGTGAA
AGAATAGTAATTTACTAGGTATGTTTGGGGCGGGATATTTTGTTAATAGGTTTTCTTTTTCCTT
CTAACCTGTGTAATGAGCTTCCGAAAAGAGTATAACTGTTTTAGAACAAATTACTTTGTCATTT
TCCTTTCCCTTTTTCTTTACAGTGTTAGGTATTTTTAAATGAAAAATTATGCACTCTCTGACTT
CAATTTCACTAATGTAATTATTTTCTTGGGAATTCTTTTAGATTTAAATTACCATCATATAAAC
CTTTCTTATAGCAAAGCCAGCGTTTGTTTTCTCACCAAACTCCATGCCAGACTCATCATAAAGA
AAGCTCAGCCTAAGTAATTCAAACAGTGCTTATAGTTTTAGAGGGAGGGTAGCATTTACTAAAT
ATTCCAGCTGGTTGTTTTATGCACAAGGCTACAGTCAGAACATAGAAAAAAAAAAACATTCTGT
GAATGAAACATTGTATGTTCAGATTTTATAAAAAGACATTTTTAAAAGCCCAATTTACAGCCGT
ATATTTTCTTATGATGTAATTTATGAAAAAGCTGTCTGTACTAACAGGTGCTGTAACACTACTG
TTGTTGGGTTTTATTGTTTGGTGATAAATGTAAACAATATTTCTAATGGAAACTATGTACTGTG
ATGTAAAAGTCTGGGCAAAATGTATATAATCCTTGTATATAATTGTGTATTTGATTATATTACT
GATTGTAAATTTAATAAAACATGTAAATATTCTGGTCTAGTTTTAAATTTCA

hide sequence

RefSeq Acc Id:

XM_039090448 ⟹ XP_038946376

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	66,403,022 - 66,470,496 (+)	NCBI
mRatBN7.2	13	63,858,282 - 63,920,538 (+)	NCBI

RefSeq Acc Id:

XM_039090449 ⟹ XP_038946377

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	66,403,022 - 66,470,496 (+)	NCBI
mRatBN7.2	13	63,858,282 - 63,920,538 (+)	NCBI

RefSeq Acc Id:

XM_039090450 ⟹ XP_038946378

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	66,403,022 - 66,470,496 (+)	NCBI
mRatBN7.2	13	63,858,282 - 63,920,538 (+)	NCBI

RefSeq Acc Id:

XM_063272099 ⟹ XP_063128169

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	66,403,022 - 66,470,496 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001178600	(Get FASTA)	NCBI Sequence Viewer
	XP_006250047	(Get FASTA)	NCBI Sequence Viewer
	XP_006250048	(Get FASTA)	NCBI Sequence Viewer
	XP_017454191	(Get FASTA)	NCBI Sequence Viewer
	XP_038946376	(Get FASTA)	NCBI Sequence Viewer
	XP_038946377	(Get FASTA)	NCBI Sequence Viewer
	XP_038946378	(Get FASTA)	NCBI Sequence Viewer
	XP_063128169	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM09567	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000017858
	ENSRNOP00000017858.9
	ENSRNOP00000095995
	ENSRNOP00000095995.2
	ENSRNOP00000104197
	ENSRNOP00000104197.1
	ENSRNOP00000109021
	ENSRNOP00000109021.1

RefSeq Acc Id:

NP_001178600 ⟸ NM_001191671

- Sequence:

show sequence

MSEAGGGRGCGCRVPQRASWSLVAATAALYLMLATTVCTAGAAPMSREEKQKLGNQVLEMFDHA
YGNYMEHAYPADELMPLTCRGRVRGQEPSRGDVDDALGKFSLTLIDSLDTLVVLNKTKEFEDAV
RKVLRDVNLDNDVVVSVFETNIRVLGGLLGGHSLAIMLKEKGEYMQWYNDELLQMAKQLGYKLL
PAFNTTSGLPYPRINLKFGIRKPEARTGTETDTCTACAGTLILEFAALSRFTGATVFEEYARKA
LDFLWEKRQRSSNLVGVTINIHTGDWVRKDSGVGAGIDSYYEYLLKAYVLLGDDSFLERFNTHY
DAIMRYISQPPLLLDVHIHKPMLNARTWMDALLAFFPGLQVLKGDIRPAIETHEMLYQVIKKHN
FLPEAFTTDFRVHWAQHPLRPEFAESTYFLYKATGDPYYLEVGKTLIENLNKYARVPCGFAAMK
DVRTGSHEDRMDSFFLAEMFKYLYLLFADKEDIIFDIEDYIFTTEAHLLPLWLSTTNRNISKKN
TTSEYTELDDSNFDWTCPNTQILFPNDPLYAQSIREPLKNVVDKSCPRGIIRVEESFRSGAKPP
LRARDFMATNPEHLEILKKMGVSLIHLKDGRVQLVQHAIQAASSVDAEDGLRFMQEMIELSSQQ
QKEQQLPPRAVQIISHPFFGRVVLTAGPAQFGLDLSKHKETRGFVASSKPYNGCSELTNPEAVM
GKIALIQRGQCMFAEKARNIQNAGAIGGIVIDDNEGSSSDTAPLFQMAGDGKDTDDIKIPMLFL
FSKEGSIILDAIREHEQVEVLLSDKARDRDPEVENEDQPSSENDSQNQSAEQMLPLPQTVGLAD
QESPGNPLESPSEPPSPADSEEAAGFAPSEQISSPTETQETAGLDGECTDLDNQLQDQPETEED
PSPNVSWGTKAQPMDSILADWNEDIEAFEMMEKDEL

hide sequence

RefSeq Acc Id:

XP_006250048 ⟸ XM_006249986

- Peptide Label:

isoform X6

- Sequence:

show sequence

MSEAGGGRGCGCRVPQRASWSLVAATAALYLMLATTVCTAGAAPMSREEKQKLGNQVLEMFDHA
YGNYMEHAYPADELMPLTCRGRVRGQEPSRGDVDDALGKFSLTLIDSLDTLVVLNKTKEFEDAV
RKVLRDVNLDNDVVVSVFETNIRVLGGLLGGHSLAIMLKEKGEYMQWYNDELLQMAKQLGYKLL
PAFNTTSGLPYPRINLKFGIRKPEARTGTETDTCTACAGTLILEFAALSRFTGATVFEEYARKA
LDFLWEKRQRSSNLVGVTINIHTGDWVRKDSGVGAGIDSYYEYLLKAYVLLGDDSFLERFNTHY
DAIMRYISQPPLLLDVHIHKPMLNARTWMDALLAFFPGLQVLKGDIRPAIETHEMLYQVIKKHN
FLPEAFTTDFRVHWAQHPLRPEFAESTYFLYKATGDPYYLEVGKTLIENLNKYARVPCGFAAMK
DVRTGSHEDRMDSFFLAEMFKYLYLLFADKEDIIFDIEDYIFTTEAHLLPLWLSTTNRNISKKN
TTSEYTELDDSNFDWTCPNTQILFPNDPLYAQSIREPLKNVVDKSCPRGIIRVREESFRSGAKP
PLRARDFMATNPEHLEILKKMGAASSVDAEDGLRFMQEMIELSSQQQKEQQLPPRAVQIISHPF
FGRVVLTAGPAQFGLDLSKHKETRGFVASSKPYNGCSELTNPEAVMGKIALIQRGQCMFAEKAR
NIQNAGAIGGIVIDDNEGSSSDTAPLFQMAGDGKDTDDIKIPMLFLFSKEGSIILDAIREHEQV
EVLLSDKARDRDPEVENEDXXXXXXDSQNQSAEQMLPLPQTVGLADQESPGNPLESPSEPPSPA
DSEEAAGFAPSEQISSPTETQETAGLDGECTDLDNQLQDQPETEEDPSPNVSWGTKAQPMDSIL
ADWNEDIEAFEMMEKDEL

hide sequence

RefSeq Acc Id:	XP_006250047 ⟸ XM_006249985
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6AKY3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSEAGGGRGCGCRVPQRASWSLVAATAALYLMLATTVCTAGAAPMSREEKQKLGNQVLEMFDHA YGNYMEHAYPADELMPLTCRGRVRGQEPSRGDVDDALGKFSLTLIDSLDTLVVLNKTKEFEDAV RKVLRDVNLDNDVVVSVFETNIRVLGGLLGGHSLAIMLKEKGEYMQWYNDELLQMAKQLGYKLL PAFNTTSGLPYPRINLKFGIRKPEARTGTETDTCTACAGTLILEFAALSRFTGATVFEEYARKA LDFLWEKRQRSSNLVGVTINIHTGDWVRKDSGVGAGIDSYYEYLLKAYVLLGDDSFLERFNTHY DAIMRYISQPPLLLDVHIHKPMLNARTWMDALLAFFPGLQVLKGDIRPAIETHEMLYQVIKKHN FLPEAFTTDFRVHWAQHPLRPEFAESTYFLYKATGDPYYLEVGKTLIENLNKYARVPCGFAAMK DVRTGSHEDRMDSFFLAEMFKYLYLLFADKEDIIFDIEDYIFTTEAHLLPLWLSTTNRNISKKN TTSEYTELDDSNFDWTCPNTQILFPNDPLYAQSIREPLKNVVDKSCPRGIIRVREESFRSGAKP PLRARDFMATNPEHLEILKKMGVSLIHLKDGRVQLVQHAIQAASSVDAEDGLRFMQEMIELSSQ QQKEQQLPPRAVQIISHPFFGRVVLTAGPAQFGLDLSKHKETRGFVASSKPYNGCSELTNPEAV MGKIALIQRGQCMFAEKARNIQNAGAIGGIVIDDNEGSSSDTAPLFQMAGDGKDTDDIKIPMLF LFSKEGSIILDAIREHEQVEVLLSDKARDRDPEVENEDXXXXXXDSQNQSAEQMLPLPQTVGLA DQESPGNPLESPSEPPSPADSEEAAGFAPSEQISSPTETQETAGLDGECTDLDNQLQDQPETEE DPSPNVSWGTKAQPMDSILADWNEDIEAFEMMEKDEL hide sequence

RefSeq Acc Id:	XP_017454191 ⟸ XM_017598702
- Peptide Label:	isoform X2
- UniProtKB:	D4AB70 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSEAGGGRGCGCRVPQRASWSLVAATAALYLMLATTVCTAGAAPMSREEKQKLGNQVLEMFDHA YGNYMEHAYPADELMPLTCRGRVRGQEPSRGDVDDALGKFSLTLIDSLDTLVVLNKTKEFEDAV RKVLRDVNLDNDVVVSVFETNIRVLGGLLGGHSLAIMLKEKGEYMQWYNDELLQMAKQLGYKLL PAFNTTSGLPYPRINLKFGIRKPEARTGTETDTCTACAGTLILEFAALSRFTGATVFEEYARKA LDFLWEKRQRSSNLVGVTINIHTGDWVRKDSGVGAGIDSYYEYLLKAYVLLGDDSFLERFNTHY DAIMRYISQPPLLLDVHIHKPMLNARTWMDALLAFFPGLQVLKGDIRPAIETHEMLYQVIKKHN FLPEAFTTDFRVHWAQHPLRPEFAESTYFLYKATGDPYYLEVGKTLIENLNKYARVPCGFAAMK DVRTGSHEDRMDSFFLAEMFKYLYLLFADKEDIIFDIEDYIFTTEAHLLPLWLSTTNRNISKKN TTSEYTELDDSNFDWTCPNTQILFPNDPLYAQSIREPLKNVVDKSCPRGIIRVEESFRSGAKPP LRARDFMATNPEHLEILKKMGVSLIHLKDGRVQLVQHAIQAASSVDAEDGLRFMQEMIELSSQQ QKEQQLPPRAVQIISHPFFGRVVLTAGPAQFGLDLSKHKETRGFVASSKPYNGCSELTNPEAVM GKIALIQRGQCMFAEKARNIQNAGAIGGIVIDDNEGSSSDTAPLFQMAGDGKDTDDIKIPMLFL FSKEGSIILDAIREHEQVEVLLSDKARDRAAILKGKRIPSYIINSNPEVENEDXXXXXXDSQNQ SAEQMLPLPQTVGLADQESPGNPLESPSEPPSPADSEEAAGFAPSEQISSPTETQETAGLDGEC TDLDNQLQDQPETEEDPSPNVSWGTKAQPMDSILADWNEDIEAFEMMEKDEL hide sequence

Ensembl Acc Id:

ENSRNOP00000017858 ⟸ ENSRNOT00000017858

RefSeq Acc Id:	XP_038946376 ⟸ XM_039090448
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038946377 ⟸ XM_039090449
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038946378 ⟸ XM_039090450
- Peptide Label:	isoform X5

Ensembl Acc Id:

ENSRNOP00000095995 ⟸ ENSRNOT00000115520

RefSeq Acc Id:	XP_063128169 ⟸ XM_063272099
- Peptide Label:	isoform X7

Ensembl Acc Id:

ENSRNOP00000104197 ⟸ ENSRNOT00000127738

Ensembl Acc Id:

ENSRNOP00000109021 ⟸ ENSRNOT00000128784

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698887

Promoter ID:

EPDNEW_R9412

Type:

initiation region

Name:

Edem3_1

Description:

ER degradation enhancing alpha-mannosidase like protein 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	69,135,444 - 69,135,504	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1561496	AgrOrtholog
BioCyc Gene	G2FUF-17927	BioCyc
Ensembl Genes	ENSRNOG00000028358	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000017858	ENTREZGENE
	ENSRNOT00000017858.9	UniProtKB/TrEMBL
	ENSRNOT00000115520	ENTREZGENE
	ENSRNOT00000115520.2	UniProtKB/TrEMBL
	ENSRNOT00000127738	ENTREZGENE
	ENSRNOT00000127738.1	UniProtKB/TrEMBL
	ENSRNOT00000128784	ENTREZGENE
	ENSRNOT00000128784.1	UniProtKB/TrEMBL
Gene3D-CATH	1.50.10.10	UniProtKB/TrEMBL
	3.50.30.30	UniProtKB/TrEMBL
InterPro	6hp_glycosidase-like_sf	UniProtKB/TrEMBL
	EDEM1/2/3	UniProtKB/TrEMBL
	EDEM3_PA	UniProtKB/TrEMBL
	Glyco_hydro_47	UniProtKB/TrEMBL
	IPR003137	UniProtKB/TrEMBL
	PA_dom_sf	UniProtKB/TrEMBL
	Seven-hairpin_glycosidases	UniProtKB/TrEMBL
NCBI Gene	289085	ENTREZGENE
PANTHER	ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 3	UniProtKB/TrEMBL
	PTHR45679	UniProtKB/TrEMBL
Pfam	Glyco_hydro_47	UniProtKB/TrEMBL
	PF02225	UniProtKB/TrEMBL
PhenoGen	Edem3	PhenoGen
PRINTS	GLYHDRLASE47	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000028358	RatGTEx
Superfamily-SCOP	Glyco_hydro_47	UniProtKB/TrEMBL
	PA domain	UniProtKB/TrEMBL
UniProt	A0A8I6AKY3	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LRB4_RAT	UniProtKB/TrEMBL
	A0ABK0LUD3_RAT	UniProtKB/TrEMBL
	D4AB70	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-04-13	Edem3	ER degradation enhancing alpha-mannosidase like protein 3	Edem3	ER degradation enhancer, mannosidase alpha-like 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-29	Edem3	ER degradation enhancer, mannosidase alpha-like 3	RGD1561496_predicted	similar to 2310050N11Rik protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1561496_predicted	similar to 2310050N11Rik protein (predicted)	LOC289085	similar to 2310050N11Rik protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC289085	similar to 2310050N11Rik protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)