Cep70 (centrosomal protein 70) - Rat Genome Database

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Gene: Cep70 (centrosomal protein 70) Rattus norvegicus
Analyze
Symbol: Cep70
Name: centrosomal protein 70
RGD ID: 1561486
Description: Predicted to enable identical protein binding activity. Predicted to be involved in cilium assembly. Predicted to be located in centrosome. Predicted to be active in microtubule organizing center. Orthologous to human CEP70 (centrosomal protein 70); INTERACTS WITH 1,3-dinitrobenzene; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: centrosomal protein 70kDa; centrosomal protein of 70 kDa; LOC367153; similar to p10-binding protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88108,689,562 - 108,742,620 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8108,689,671 - 108,742,617 (+)EnsemblGRCr8
mRatBN7.2899,810,270 - 99,863,279 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl899,810,367 - 99,862,855 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8105,476,680 - 105,528,778 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08103,675,981 - 103,728,075 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08101,518,486 - 101,570,586 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08107,495,326 - 107,548,274 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8107,495,366 - 107,548,269 (+)Ensemblrn6Rnor6.0
Rnor_5.08106,921,022 - 106,973,978 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48104,118,970 - 104,162,318 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera899,214,148 - 99,266,039 (+)NCBICelera
Cytogenetic Map8q31NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
1,3-dinitrobenzene  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
aflatoxin M1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
clorgyline  (ISO)
copper(II) sulfate  (ISO)
cordycepin  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
dicrotophos  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
epoxiconazole  (ISO)
furan  (EXP)
gentamycin  (EXP)
inulin  (ISO)
ketamine  (EXP)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
nickel atom  (ISO)
oxaliplatin  (EXP)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
potassium dichromate  (ISO)
quercetin  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
tetraphene  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:21399614   PMID:25416956   PMID:27107012  


Genomics

Comparative Map Data
Cep70
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88108,689,562 - 108,742,620 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8108,689,671 - 108,742,617 (+)EnsemblGRCr8
mRatBN7.2899,810,270 - 99,863,279 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl899,810,367 - 99,862,855 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8105,476,680 - 105,528,778 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08103,675,981 - 103,728,075 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08101,518,486 - 101,570,586 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08107,495,326 - 107,548,274 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8107,495,366 - 107,548,269 (+)Ensemblrn6Rnor6.0
Rnor_5.08106,921,022 - 106,973,978 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48104,118,970 - 104,162,318 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera899,214,148 - 99,266,039 (+)NCBICelera
Cytogenetic Map8q31NCBI
CEP70
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383138,494,344 - 138,594,260 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3138,494,339 - 138,594,538 (-)Ensemblhg38GRCh38
GRCh373138,213,186 - 138,313,102 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363139,695,876 - 139,795,819 (-)NCBIBuild 36Build 36hg18NCBI36
Celera3136,638,100 - 136,738,061 (-)NCBICelera
Cytogenetic Map3q22.3NCBI
HuRef3135,587,913 - 135,687,890 (-)NCBIHuRef
CHM1_13138,176,970 - 138,276,903 (-)NCBICHM1_1
T2T-CHM13v2.03141,234,912 - 141,334,894 (-)NCBIT2T-CHM13v2.0
Cep70
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39999,065,640 - 99,205,569 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl999,125,420 - 99,182,457 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38999,183,584 - 99,325,879 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl999,243,367 - 99,300,404 (+)Ensemblmm10GRCm38
MGSCv37999,143,887 - 99,200,823 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36999,052,800 - 99,109,756 (+)NCBIMGSCv36mm8
Celera998,783,432 - 98,833,932 (+)NCBICelera
Cytogenetic Map9E3.3NCBI
cM Map951.45NCBI
Cep70
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955501417,866 - 548,645 (+)Ensembl
ChiLan1.0NW_004955501478,920 - 533,104 (+)NCBIChiLan1.0ChiLan1.0
CEP70
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22136,367,497 - 136,502,225 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13136,373,151 - 136,506,953 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03135,525,035 - 135,625,533 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13142,974,134 - 143,229,079 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3142,974,810 - 143,228,835 (-)EnsemblpanPan2panpan1.1
CEP70
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12334,674,295 - 34,764,445 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2334,700,041 - 34,792,035 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2334,673,596 - 34,758,118 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02335,221,906 - 35,306,489 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2335,240,079 - 35,336,758 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12334,902,890 - 34,987,415 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02334,968,728 - 35,053,230 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02335,219,576 - 35,303,842 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
LOC101959627
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560274,053,342 - 74,088,891 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936540792,539 - 828,674 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CEP70
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1379,304,687 - 79,386,952 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11379,305,678 - 79,386,946 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21386,949,573 - 87,031,245 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CEP70
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11551,944,525 - 52,047,243 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1551,969,910 - 52,046,563 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604124,976,419 - 25,059,520 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cep70
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473015,048,836 - 15,106,760 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Cep70
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1890,602,566 - 90,645,917 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cep70
216 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:123
Count of miRNA genes:96
Interacting mature miRNAs:99
Transcripts:ENSRNOT00000056590
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)8105462581132782436Rat
1300177Cm2Cardiac mass QTL 23.65heart mass (VT:0007028)heart weight (CMO:0000017)863141536109261840Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)882352698127352698Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)861019838121662124Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)849849908118871671Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)880768445125768445Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)880768445125768445Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)870041301121080908Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)868690349119799881Rat
10450865Bw175Body weight QTL 1754.1total fat pad mass (VT:0015008)adipose tissue molecular composition measurement (CMO:0000484)884192326129192326Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)8102413464132782436Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8103375781129871912Rat
71120Niddm21Non-insulin dependent diabetes mellitus QTL 213.73blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)866992095111992095Rat
8693654Alc32Alcohol consumption QTL 3220.755drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)897492344116428905Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)839106363114525825Rat
634332Pia18Pristane induced arthritis QTL 184joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)884192326132782436Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)885348065130348065Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)879394435132782436Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)898145073122898010Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)880768445125768445Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)880768445125768445Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)891340911131690273Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
23 12 82 213 91 90 59 150 59 6 478 274 22 191 114 124 31 34 34

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001017470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001428871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001428872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001428873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010054011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC141164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC087075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000056590   ⟹   ENSRNOP00000053430
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8108,695,712 - 108,742,617 (+)Ensembl
mRatBN7.2 Ensembl899,810,367 - 99,862,855 (+)Ensembl
Rnor_6.0 Ensembl8107,495,366 - 107,547,640 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000081029   ⟹   ENSRNOP00000072786
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8108,689,671 - 108,741,988 (+)Ensembl
mRatBN7.2 Ensembl899,810,367 - 99,862,855 (+)Ensembl
Rnor_6.0 Ensembl8107,499,262 - 107,548,269 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000081594   ⟹   ENSRNOP00000068907
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8108,702,693 - 108,742,617 (+)Ensembl
mRatBN7.2 Ensembl899,823,355 - 99,862,855 (+)Ensembl
Rnor_6.0 Ensembl8107,508,351 - 107,547,643 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000121355   ⟹   ENSRNOP00000105102
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8108,708,045 - 108,742,617 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000132763   ⟹   ENSRNOP00000109460
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8108,705,181 - 108,742,617 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000139333   ⟹   ENSRNOP00000107943
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8108,695,750 - 108,741,531 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000153468   ⟹   ENSRNOP00000099784
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8108,695,750 - 108,742,617 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000156249   ⟹   ENSRNOP00000109250
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8108,706,575 - 108,742,002 (+)Ensembl
RefSeq Acc Id: NM_001017470   ⟹   NP_001017470
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,689,707 - 108,741,995 (+)NCBI
mRatBN7.2899,810,367 - 99,862,654 (+)NCBI
Rnor_6.08107,495,366 - 107,547,649 (+)NCBI
Rnor_5.08106,921,022 - 106,973,978 (+)NCBI
RGSC_v3.48104,118,970 - 104,162,318 (+)RGD
Celera899,214,148 - 99,266,039 (+)RGD
Sequence:
RefSeq Acc Id: XM_006243635   ⟹   XP_006243697
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,695,622 - 108,742,620 (+)NCBI
mRatBN7.2899,816,268 - 99,863,279 (+)NCBI
Rnor_6.08107,501,332 - 107,548,274 (+)NCBI
Rnor_5.08106,921,022 - 106,973,978 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243639   ⟹   XP_006243701
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,695,623 - 108,742,620 (+)NCBI
mRatBN7.2899,816,269 - 99,863,279 (+)NCBI
Rnor_6.08107,501,332 - 107,548,274 (+)NCBI
Rnor_5.08106,921,022 - 106,973,978 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243640   ⟹   XP_006243702
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,708,045 - 108,742,620 (+)NCBI
mRatBN7.2899,828,796 - 99,863,279 (+)NCBI
Rnor_6.08107,513,836 - 107,548,274 (+)NCBI
Rnor_5.08106,921,022 - 106,973,978 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008766556   ⟹   XP_008764778
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,712,663 - 108,742,620 (+)NCBI
mRatBN7.2899,833,325 - 99,863,279 (+)NCBI
Rnor_6.08107,520,069 - 107,548,274 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063265890   ⟹   XP_063121960
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,695,620 - 108,742,620 (+)NCBI
RefSeq Acc Id: XM_063265891   ⟹   XP_063121961
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,689,599 - 108,742,620 (+)NCBI
RefSeq Acc Id: XM_063265892   ⟹   XP_063121962
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,695,803 - 108,742,620 (+)NCBI
RefSeq Acc Id: XM_063265894   ⟹   XP_063121964
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,695,796 - 108,742,620 (+)NCBI
RefSeq Acc Id: XM_063265895   ⟹   XP_063121965
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,689,601 - 108,742,620 (+)NCBI
RefSeq Acc Id: XM_063265896   ⟹   XP_063121966
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,689,562 - 108,742,620 (+)NCBI
RefSeq Acc Id: XM_063265897   ⟹   XP_063121967
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,695,757 - 108,742,620 (+)NCBI
RefSeq Acc Id: XM_063265899   ⟹   XP_063121969
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,695,620 - 108,742,620 (+)NCBI
RefSeq Acc Id: XM_063265900   ⟹   XP_063121970
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,689,562 - 108,742,620 (+)NCBI
RefSeq Acc Id: XM_063265901   ⟹   XP_063121971
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,695,758 - 108,742,620 (+)NCBI
RefSeq Acc Id: XM_063265902   ⟹   XP_063121972
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,708,045 - 108,742,620 (+)NCBI
RefSeq Acc Id: XM_063265903   ⟹   XP_063121973
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,702,877 - 108,742,620 (+)NCBI
RefSeq Acc Id: XM_063265904   ⟹   XP_063121974
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,712,663 - 108,742,620 (+)NCBI
RefSeq Acc Id: XR_010054011
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88108,695,621 - 108,718,707 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001017470 (Get FASTA)   NCBI Sequence Viewer  
  NP_001415800 (Get FASTA)   NCBI Sequence Viewer  
  NP_001415801 (Get FASTA)   NCBI Sequence Viewer  
  NP_001415802 (Get FASTA)   NCBI Sequence Viewer  
  XP_006243697 (Get FASTA)   NCBI Sequence Viewer  
  XP_006243701 (Get FASTA)   NCBI Sequence Viewer  
  XP_006243702 (Get FASTA)   NCBI Sequence Viewer  
  XP_008764778 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121960 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121961 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121962 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121964 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121965 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121966 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121967 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121969 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121970 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121971 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121972 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121973 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121974 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH87075 (Get FASTA)   NCBI Sequence Viewer  
  EDL77445 (Get FASTA)   NCBI Sequence Viewer  
  EDL77446 (Get FASTA)   NCBI Sequence Viewer  
  EDL77447 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000053430
  ENSRNOP00000053430.2
  ENSRNOP00000072786
  ENSRNOP00000099784
  ENSRNOP00000105102
  ENSRNOP00000109250
GenBank Protein Q5PQQ9 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001017470   ⟸   NM_001017470
- Sequence:
RefSeq Acc Id: XP_006243697   ⟸   XM_006243635
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006243701   ⟸   XM_006243639
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006243702   ⟸   XM_006243640
- Peptide Label: isoform X5
- UniProtKB: A0A0G2JU00 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008764778   ⟸   XM_008766556
- Peptide Label: isoform X8
- Sequence:
Ensembl Acc Id: ENSRNOP00000068907   ⟸   ENSRNOT00000081594
Ensembl Acc Id: ENSRNOP00000053430   ⟸   ENSRNOT00000056590
Ensembl Acc Id: ENSRNOP00000072786   ⟸   ENSRNOT00000081029
RefSeq Acc Id: XP_063121966   ⟸   XM_063265896
- Peptide Label: isoform X2
- UniProtKB: A0A0G2K3U9 (UniProtKB/TrEMBL),   A6I2D0 (UniProtKB/TrEMBL),   A0A0G2JU00 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121970   ⟸   XM_063265900
- Peptide Label: isoform X4
- UniProtKB: Q5PQQ9 (UniProtKB/Swiss-Prot),   A0A0G2JU00 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121961   ⟸   XM_063265891
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JU00 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121965   ⟸   XM_063265895
- Peptide Label: isoform X2
- UniProtKB: A0A0G2K3U9 (UniProtKB/TrEMBL),   A6I2D0 (UniProtKB/TrEMBL),   A0A0G2JU00 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121960   ⟸   XM_063265890
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JU00 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121969   ⟸   XM_063265899
- Peptide Label: isoform X3
- UniProtKB: A0A0G2JU00 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121967   ⟸   XM_063265897
- Peptide Label: isoform X2
- UniProtKB: A0A0G2K3U9 (UniProtKB/TrEMBL),   A6I2D0 (UniProtKB/TrEMBL),   A0A0G2JU00 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121971   ⟸   XM_063265901
- Peptide Label: isoform X4
- UniProtKB: Q5PQQ9 (UniProtKB/Swiss-Prot),   A0A0G2JU00 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121964   ⟸   XM_063265894
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063121962   ⟸   XM_063265892
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JU00 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121973   ⟸   XM_063265903
- Peptide Label: isoform X7
- UniProtKB: A0A0G2JU00 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121972   ⟸   XM_063265902
- Peptide Label: isoform X6
- UniProtKB: A0A0G2JU00 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121974   ⟸   XM_063265904
- Peptide Label: isoform X9
Ensembl Acc Id: ENSRNOP00000107943   ⟸   ENSRNOT00000139333
Ensembl Acc Id: ENSRNOP00000109250   ⟸   ENSRNOT00000156249
Ensembl Acc Id: ENSRNOP00000105102   ⟸   ENSRNOT00000121355
Ensembl Acc Id: ENSRNOP00000109460   ⟸   ENSRNOT00000132763
Ensembl Acc Id: ENSRNOP00000099784   ⟸   ENSRNOT00000153468

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5PQQ9-F1-model_v2 AlphaFold Q5PQQ9 1-598 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696209
Promoter ID:EPDNEW_R6733
Type:single initiation site
Name:Cep70_1
Description:centrosomal protein 70
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08107,495,320 - 107,495,380EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561486 AgrOrtholog
BioCyc Gene G2FUF-29401 BioCyc
Ensembl Genes ENSRNOG00000022845 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000056590 ENTREZGENE
  ENSRNOT00000056590.5 UniProtKB/Swiss-Prot
  ENSRNOT00000081029 ENTREZGENE
  ENSRNOT00000121355 ENTREZGENE
  ENSRNOT00000153468 ENTREZGENE
  ENSRNOT00000156249 ENTREZGENE
IMAGE_CLONE IMAGE:7134655 IMAGE-MGC_LOAD
InterPro CEP70 UniProtKB/Swiss-Prot
KEGG Report rno:367153 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94447 IMAGE-MGC_LOAD
NCBI Gene 367153 ENTREZGENE
PANTHER CENTROSOMAL PROTEIN OF 70 KDA UniProtKB/Swiss-Prot
  PTHR14594 UniProtKB/Swiss-Prot
PhenoGen Cep70 PhenoGen
RatGTEx ENSRNOG00000022845 RatGTEx
UniProt A0A0G2JU00 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K3U9 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L5N7_RAT UniProtKB/TrEMBL
  A0ABK0LS25_RAT UniProtKB/TrEMBL
  A0ABK0M3H1_RAT UniProtKB/TrEMBL
  A0ABK0M3Y4_RAT UniProtKB/TrEMBL
  A6I2D0 ENTREZGENE, UniProtKB/TrEMBL
  CEP70_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-04-27 Cep70  centrosomal protein 70  Cep70  centrosomal protein 70kDa  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-29 Cep70  centrosomal protein 70kDa  Cep70  centrosomal protein 70  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-05 Cep70  centrosomal protein 70  LOC367153  similar to p10-binding protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC367153  similar to p10-binding protein      Symbol and Name status set to provisional 70820 PROVISIONAL