Nudt16l1 (nudix hydrolase 16 like 1)

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Gene: Nudt16l1 (nudix hydrolase 16 like 1) Rattus norvegicus

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Symbol:

Nudt16l1

Name:

nudix hydrolase 16 like 1

RGD ID:

1561451

Description:

Predicted to enable snoRNA binding activity. Predicted to be involved in negative regulation of double-strand break repair via nonhomologous end joining. Predicted to be active in nucleus. Orthologous to human NUDT16L1 (nudix hydrolase 16 like 1); PARTICIPATES IN syndecan signaling pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; alpha-Zearalanol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC497867; nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1; protein syndesmos; similar to 1110001K21Rik protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NUDT16L1 (nudix hydrolase 16 like 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Nudt16l1 (nudix hydrolase 16 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Nudt16l1 (nudix hydrolase 16 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NUDT16L1 (nudix hydrolase 16 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NUDT16L1 (nudix hydrolase 16 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NUDT16L1 (nudix hydrolase 16 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NUDT16L1 (nudix hydrolase 16 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Nudt16l1 (nudix hydrolase 16 like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Nudt16l1 (nudix hydrolase 16 like 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	NUDT16L1 (nudix hydrolase 16 like 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	zgc:103759	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cuta	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	nudt16	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	11,142,626 - 11,144,542 (-)	NCBI		GRCr8
mRatBN7.2	10	10,636,174 - 10,638,090 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	10,636,174 - 10,688,370 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	15,344,590 - 15,346,505 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	14,833,407 - 14,835,322 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	10,502,538 - 10,504,454 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	10,829,866 - 10,831,782 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	10,829,867 - 10,831,782 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	9,596,796 - 9,598,712 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	10,753,152 - 10,755,068 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	9,600,384 - 9,602,300 (-)	NCBI		Celera
Cytogenetic Map	10	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

epilepsy (ISO)

idiopathic generalized epilepsy (ISO)

Kohlschutter-Tonz syndrome (ISO)

Rubinstein-Taybi syndrome (ISO)

short-rib thoracic dysplasia 9 with or without polydactyly (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dimethylhydrazine (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

acrolein (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

alpha-Zearalanol (EXP)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

chlorpyrifos (ISO)

clofibrate (ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

cylindrospermopsin (ISO)

decabromodiphenyl ether (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP,ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

finasteride (EXP)

fluoranthene (ISO)

folic acid (ISO)

gentamycin (EXP)

ivermectin (ISO)

mercury dichloride (EXP)

methyl methanesulfonate (ISO)

ozone (ISO)

paracetamol (ISO)

perfluorooctanoic acid (EXP)

pirinixic acid (ISO)

resveratrol (ISO)

Soman (EXP)

sulindac (EXP)

sunitinib (ISO)

temozolomide (ISO)

testosterone (ISO)

tetrachloromethane (EXP,ISO)

thapsigargin (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mRNA catabolic process (IBA)

negative regulation of double-strand break repair via nonhomologous end joining (ISO)

sno(s)RNA catabolic process (IBA)

Cellular Component

nucleus (IBA,ISO)

Molecular Function

5'-(N(7)-methylguanosine 5'-triphospho)-[mRNA] hydrolase activity (ISO)

phosphodiesterase decapping endonuclease activity (IBA)

protein binding (ISO)

protein homodimerization activity (ISO)

snoRNA binding (IBA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

syndecan signaling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:18820299	PMID:21070968	PMID:22681889	PMID:28241136

Genomics

Comparative Map Data

Nudt16l1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	11,142,626 - 11,144,542 (-)	NCBI		GRCr8
mRatBN7.2	10	10,636,174 - 10,638,090 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	10,636,174 - 10,688,370 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	15,344,590 - 15,346,505 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	14,833,407 - 14,835,322 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	10,502,538 - 10,504,454 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	10,829,866 - 10,831,782 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	10,829,867 - 10,831,782 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	9,596,796 - 9,598,712 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	10,753,152 - 10,755,068 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	9,600,384 - 9,602,300 (-)	NCBI		Celera
Cytogenetic Map	10	q12	NCBI

NUDT16L1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	4,693,562 - 4,695,859 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	4,693,562 - 4,695,859 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	4,743,563 - 4,745,860 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	4,683,717 - 4,685,846 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	16	4,683,716 - 4,685,846	NCBI
Celera	16	4,952,472 - 4,954,638 (+)	NCBI		Celera
Cytogenetic Map	16	p13.3	NCBI
HuRef	16	4,710,213 - 4,712,379 (+)	NCBI		HuRef
CHM1_1	16	4,744,475 - 4,746,641 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	4,723,014 - 4,725,311 (+)	NCBI		T2T-CHM13v2.0

Nudt16l1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	4,756,975 - 4,758,892 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	4,756,625 - 4,758,896 (+)	Ensembl		GRCm39 Ensembl
GRCm38	16	4,939,111 - 4,941,028 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	4,938,761 - 4,941,032 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	4,939,111 - 4,941,025 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	4,854,339 - 4,856,253 (+)	NCBI		MGSCv36	mm8
Celera	16	5,570,451 - 5,572,360 (+)	NCBI		Celera
Cytogenetic Map	16	A1	NCBI
cM Map	16	2.48	NCBI

Nudt16l1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955442	12,775,630 - 12,777,549 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955442	12,761,962 - 12,777,549 (-)	NCBI	ChiLan1.0	ChiLan1.0

NUDT16L1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	5,222,277 - 5,224,563 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	9,012,548 - 9,014,709 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	3,615,841 - 3,620,526 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	4,785,313 - 4,787,445 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	4,785,358 - 4,786,775 (+)	Ensembl	panpan1.1		panPan2

NUDT16L1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	36,711,351 - 36,713,931 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	36,711,671 - 36,713,896 (-)	NCBI	CanFam3.1		canFam3	CanFam3.1
CanFam3.1 Ensembl	6	36,711,671 - 36,713,896 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
ROS_Cfam_1.0	6	36,914,416 - 36,916,931 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	36,914,416 - 36,916,933 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	36,708,267 - 36,710,792 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	36,601,116 - 36,603,648 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	37,003,796 - 37,006,314 (-)	NCBI		UU_Cfam_GSD_1.0

NUDT16L1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	37,684,207 - 37,693,652 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	37,684,206 - 37,694,653 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	38,747,871 - 38,753,316 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NUDT16L1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	4,372,989 - 4,377,679 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	4,375,517 - 4,377,032 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666068	26,287,633 - 26,290,064 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Nudt16l1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624824	2,476,144 - 2,478,650 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Nudt16l1
3 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	92
Count of miRNA genes:	76
Interacting mature miRNAs:	85
Transcripts:	ENSRNOT00000004314
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313095	Bss62	Bone structure and strength QTL 62	1.5	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	5387014	50387014	Rat
631660	Hcar1	Hepatocarcinoma resistance QTL 1	3.4	0.0001	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	10	6154182	15990232	Rat
1576304	Schws7	Schwannoma susceptibility QTL 7		0.0115	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	4765527	19816042	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6154182	73453136	Rat
2313066	Bss63	Bone structure and strength QTL 63	1.4	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	10	5387014	50387014	Rat
7411611	Foco17	Food consumption QTL 17	18.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	1	42315980	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	743364	63851208	Rat
2313064	Bmd71	Bone mineral density QTL 71	0.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	10	5387014	50387014	Rat
2303118	Mamtr7	Mammary tumor resistance QTL 7		0.003	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	9658275	104670812	Rat
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1	80676123	Rat
634329	Pia15	Pristane induced arthritis QTL 15	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	1	24158324	Rat
1578761	Stresp21	Stress response QTL 21	3.3		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	6375746	51375746	Rat
2293680	Bss40	Bone structure and strength QTL 40	5.66	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	10	1	35225947	Rat
7387235	Uae41	Urinary albumin excretion QTL 41	5.26	0.1874	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	10	1	29497586	Rat
2313104	Bss61	Bone structure and strength QTL 61	0.9	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	10	5387014	50387014	Rat
2298544	Neuinf9	Neuroinflammation QTL 9	4.6		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	10	5801990	62146030	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6357896	96121100	Rat
10401803	Kidm50	Kidney mass QTL 50			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	10	418344	45418344	Rat
737820	Alc9	Alcohol consumption QTL 9	2.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	10	5144027	19233348	Rat
2313081	Bss64	Bone structure and strength QTL 64	1.3	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	10	5387014	50387014	Rat
631828	Alc5	Alcohol consumption QTL 5	2.4		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	10	5144027	17245662	Rat
634327	Hc4	Hypercalciuria QTL 4	2.4		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	10	1	38328221	Rat

Markers in Region

RH134454

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	10,638,987 - 10,639,170 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	10,832,680 - 10,832,862	NCBI	Rnor6.0
Rnor_5.0	10	9,599,610 - 9,599,792	UniSTS	Rnor5.0
RGSC_v3.4	10	10,755,966 - 10,756,148	UniSTS	RGSC3.4
Celera	10	9,603,198 - 9,603,380	UniSTS
Cytogenetic Map	10	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001100782	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC105819	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC158814	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213246	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214509	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ219409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ221237	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000004314 ⟹ ENSRNOP00000004314

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	10,636,707 - 10,638,107 (-)	Ensembl
Rnor_6.0 Ensembl	10	10,829,867 - 10,831,782 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000112556 ⟹ ENSRNOP00000085011

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	10,636,174 - 10,688,370 (-)	Ensembl

RefSeq Acc Id:

NM_001100782 ⟹ NP_001094252

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,142,626 - 11,144,542 (-)	NCBI
mRatBN7.2	10	10,636,174 - 10,638,090 (-)	NCBI
Rnor_6.0	10	10,829,866 - 10,831,782 (-)	NCBI
Rnor_5.0	10	9,596,796 - 9,598,712 (-)	NCBI
RGSC_v3.4	10	10,753,152 - 10,755,068 (-)	RGD
Celera	10	9,600,384 - 9,602,300 (-)	RGD

Sequence:

show sequence

GGAGCACATCAAGATGTCGACCACGACGGTTCCGGAGCTGAAGCAGATCAGTCGGGAGGAAGCA
ATGCGCTTGGGGCCCGGCTGGAGCCATTCATGCCACGCCATGCTGTACGCTGCCAACCCCGGGC
AACTTTTCGGCCGTATCCCCATGCGTTTCTCAGTACTGATGCAGATGCGCTTCGATGGGCTGCT
GGGCTTTCCCGGGGGTTTCGTGGACCGCCGCTTCTGGTCACTGGAGGATGGCTTGAACCGGGTC
CTGGGTCTGGGCCTGGGCGGCCTACGCCTTACTGAAGCTGACTACCTGAGTTCACACCTGACTG
AGGGTCCACACCGTGTGGTGGCACACCTGTACGCACGGCAGCTGACGCTGGAACAGCTGCATGC
TGTGGAGATCAGCGCTGTGCACTCGCGGGACCACGGTTTGGAGGTCCTGGGCCTTGTACGTGTC
CCACTGTACACACAGAAGGATCGAGTAGGAGGCTTCCCTAACTTTCTGAGCAACGCCTTCGTCA
GCACTGCCAAATATCAGCTCCTATTTGCCCTTAAGGTACTCAACATGATGCCCTCGGAAAAGCT
GGCCGAGGCCTTGGCCTCAGCCACGGAGAAGCAGAAGAAGGCCCTAGAGAAGCTGCTCCCGGCC
TCATCCTGAGGTGGTTCCTGTGCAGGTCCCTGCCCTCCCTTGGCTGTCTCTGCCCACAGGCCCT
GGAATTCCCGAGAAGCGTGCCTTCTAGTGTGTTTGGTTTTGCATCCCTTCTACTGCAAGGGACA
AGCAGGCAGCTGTTCATCATTGTTGTCCCAAGCAGTCCCTGGGACCCAGCCACCCTCTCTCAGG
TTGGTCAGTGGGCTGGGCCTGGGCCCGGGCCCAGCTTTTCAAGCTGAAGATGTTCTTCTCACCC
ATCCCAGGGCTCAAACTGTGCCGTGAGTCTGTTCATGACTGGTGGAGCCCCAGCTAGAGCCATT
CTTCCCAGGCAACCACTCGGATGGTACCCAGATCCTGGACTGGTTGTGGGTTTTGTTCAGTAGA
GAGGACCCATATTAGATCAGCCCTTCCTTCCCTTAGCCCAGAACCCGGTCCAGCTTGGGGTAGG
ATGATGCTTGGGTGGTTGTTGGATTTCTGTTGGGTTTTTTTCCTTGGTGTATGAACTGTGGGTT
GGTTTCAGAATGGCTGTGCCCCATATGGCTTTGTTTTCCCCATGAGGGCTTTGACTTGGCTCTG
TGAAACTGAGGAAGAAAGAAGACAATAAAGCCATTCCTCTGATGCTCAAAAAAAAAAAAAAAAA
AAAAAAAA

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Protein Sequences


Protein RefSeqs	NP_001094252	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI05820	(Get FASTA)	NCBI Sequence Viewer
	AAI58815	(Get FASTA)	NCBI Sequence Viewer
	EDL96276	(Get FASTA)	NCBI Sequence Viewer
	EDL96277	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000004314.5
	ENSRNOP00000085011.1

RefSeq Acc Id:

NP_001094252 ⟸ NM_001100782

- UniProtKB:

B0BNG7 (UniProtKB/TrEMBL), Q3B8R8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSTTTVPELKQISREEAMRLGPGWSHSCHAMLYAANPGQLFGRIPMRFSVLMQMRFDGLLGFPG
GFVDRRFWSLEDGLNRVLGLGLGGLRLTEADYLSSHLTEGPHRVVAHLYARQLTLEQLHAVEIS
AVHSRDHGLEVLGLVRVPLYTQKDRVGGFPNFLSNAFVSTAKYQLLFALKVLNMMPSEKLAEAL
ASATEKQKKALEKLLPASS

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Ensembl Acc Id:

ENSRNOP00000004314 ⟸ ENSRNOT00000004314

Ensembl Acc Id:

ENSRNOP00000085011 ⟸ ENSRNOT00000112556

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B0BNG7-F1-model_v2	AlphaFold	B0BNG7	1-211	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696969

Promoter ID:

EPDNEW_R7494

Type:

multiple initiation site

Name:

Nudt16l1_1

Description:

nudix hydrolase 16 like 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	10,831,791 - 10,831,851	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1561451	AgrOrtholog
BioCyc Gene	G2FUF-26049	BioCyc
Ensembl Genes	ENSRNOG00000003224	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000004314.7	UniProtKB/TrEMBL
	ENSRNOT00000112556.1	UniProtKB/TrEMBL
Gene3D-CATH	Nucleoside Triphosphate Pyrophosphohydrolase	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7369122	IMAGE-MGC_LOAD
	IMAGE:7371601	IMAGE-MGC_LOAD
InterPro	NUDIX_hydrolase_dom-like	UniProtKB/TrEMBL
	Nudix_hydrolase_NUDT16_sf	UniProtKB/TrEMBL
KEGG Report	rno:497867	UniProtKB/TrEMBL
MGC_CLONE	MGC:125174	IMAGE-MGC_LOAD
	MGC:188252	IMAGE-MGC_LOAD
NCBI Gene	497867	ENTREZGENE
PANTHER	NUDIX T16 FAMILY MEMBER	UniProtKB/TrEMBL
	TUDOR-INTERACTING REPAIR REGULATOR PROTEIN	UniProtKB/TrEMBL
Pfam	Nudt16-like	UniProtKB/TrEMBL
PhenoGen	Nudt16l1	PhenoGen
RatGTEx	ENSRNOG00000003224	RatGTEx
Superfamily-SCOP	NUDIX_hydrolase	UniProtKB/TrEMBL
UniProt	A0A8I6A320_RAT	UniProtKB/TrEMBL
	B0BNG7	ENTREZGENE, UniProtKB/TrEMBL
	F7FHG5_RAT	UniProtKB/TrEMBL
	Q3B8R8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-12-10	Nudt16l1	nudix hydrolase 16 like 1	Nudt16l1	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-05	Nudt16l1	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	LOC497867	similar to 1110001K21Rik protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	LOC497867	similar to 1110001K21Rik protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Annotations - PID (archival)