Advanced Search (OLGA)

Gene: C19h16orf86 (similar to human chromosome 16 open reading frame 86) Rattus norvegicus

Analyze

Symbol:

C19h16orf86

Name:

similar to human chromosome 16 open reading frame 86

RGD ID:

1561415

Description:

Orthologous to human C16orf86 (chromosome 16 open reading frame 86); INTERACTS WITH bisphenol A; trichloroethene; 2-hydroxypropanoic acid (ortholog).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hypothetical protein LOC498943; LOC498943; RGD1561415; uncharacterized protein C16orf86 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	50,506,505 - 50,508,415 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	50,505,546 - 50,508,414 (+)	Ensembl				GRCr8
mRatBN7.2	19	33,596,591 - 33,598,703 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	33,595,995 - 33,598,521 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	40,412,187 - 40,414,096 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	41,065,519 - 41,067,428 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	43,363,323 - 43,365,232 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	37,675,166 - 37,677,280 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	37,675,113 - 37,677,073 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	48,541,407 - 48,543,997 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	35,540,429 - 35,542,338 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	33,024,563 - 33,026,472 (+)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2-hydroxypropanoic acid (ISO)

Aflatoxin B2 alpha (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

butanal (ISO)

decabromodiphenyl ether (ISO)

niclosamide (ISO)

okadaic acid (ISO)

propanal (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

S-nitrosoglutathione (ISO)

silicon dioxide (ISO)

sunitinib (ISO)

testosterone (ISO)

trichloroethene (EXP)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

C19h16orf86
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	50,506,505 - 50,508,415 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	50,505,546 - 50,508,414 (+)	Ensembl				GRCr8
mRatBN7.2	19	33,596,591 - 33,598,703 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	33,595,995 - 33,598,521 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	40,412,187 - 40,414,096 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	41,065,519 - 41,067,428 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	43,363,323 - 43,365,232 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	37,675,166 - 37,677,280 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	37,675,113 - 37,677,073 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	48,541,407 - 48,543,997 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	35,540,429 - 35,542,338 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	33,024,563 - 33,026,472 (+)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

C16orf86
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	67,666,814 - 67,668,755 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	67,666,814 - 67,668,757 (+)	Ensembl			hg38	GRCh38
GRCh37	16	67,700,717 - 67,702,658 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	66,258,218 - 66,260,162 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	16	52,209,207 - 52,211,151 (+)	NCBI		Celera
Cytogenetic Map	16	q22.1	NCBI
HuRef	16	53,573,628 - 53,575,572 (+)	NCBI		HuRef
CHM1_1	16	69,108,430 - 69,110,374 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	73,461,582 - 73,463,523 (+)	NCBI		T2T-CHM13v2.0

4933405L10Rik
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	106,434,921 - 106,436,877 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	106,434,287 - 106,436,878 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	105,708,289 - 105,710,245 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	105,707,655 - 105,710,246 (+)	Ensembl			mm10	GRCm38
MGSCv37	8	108,232,203 - 108,234,068 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	108,597,420 - 108,599,375 (+)	NCBI		MGSCv36	mm8
Celera	8	109,933,221 - 109,935,086 (+)	NCBI		Celera
Cytogenetic Map	8	D3	NCBI
cM Map	8	53.04	NCBI

CUNH16orf86
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955484	9,013,890 - 9,015,520 (-)	Ensembl
ChiLan1.0	NW_004955484	9,013,743 - 9,015,836 (-)	NCBI	ChiLan1.0	ChiLan1.0

C18H16orf86
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	77,195,135 - 77,196,956 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	83,107,601 - 83,109,419 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	48,010,721 - 48,012,660 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	67,400,057 - 67,401,999 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	67,400,057 - 67,401,999 (+)	Ensembl			panPan2	panpan1.1

C5H16orf86
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	81,781,829 - 81,783,754 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	81,781,832 - 81,783,620 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	81,771,590 - 81,773,517 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	82,216,996 - 82,218,923 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	82,216,999 - 82,218,787 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	82,043,325 - 82,045,252 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	81,724,854 - 81,726,787 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	82,367,403 - 82,369,336 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

CUNH16orf86
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	41,528,189 - 41,533,907 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	18,059,127 - 18,060,789 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	18,059,127 - 18,061,250 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

C6H16orf86
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	28,287,414 - 28,289,406 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	28,287,414 - 28,289,248 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

C5H16orf86
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	59,775,704 - 59,777,625 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	59,774,667 - 59,777,519 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666047	22,529,467 - 22,531,428 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CUNH16orf86
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	18,678,607 - 18,682,464 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624746	18,680,021 - 18,682,578 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

C17H16orf86
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	17	25,442,506 - 25,444,417 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in C19h16orf86
2 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	83
Count of miRNA genes:	67
Interacting mature miRNAs:	71
Transcripts:	ENSRNOT00000024125
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61447	Tcas1	Tongue tumor susceptibility QTL 1	6.08		tongue integrity trait (VT:0010553)	squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)	19	19220689	64220689	Rat
9590298	Uminl5	Urine mineral level QTL 5	3.59	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	19	7997750	52997750	Rat
724546	Kidm3	Kidney mass QTL 3	3.1		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	19	46226778	74246245	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	36289	74246245	Rat
2313395	Anxrr26	Anxiety related response QTL 26			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	19	44385134	74246245	Rat
1578764	Stresp19	Stress response QTL 19	3.6	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	19	32539615	74246245	Rat
1558656	Prcs1	Prostate cancer susceptibility QTL 1	5		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	19	31287532	51431640	Rat
9590090	Insglur8	Insulin/glucose ratio QTL 8	10.81	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	19	7997750	52997750	Rat
1331788	Rf45	Renal function QTL 45	2.818		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	19	31777888	74246245	Rat
1554318	Bmd5	Bone mineral density QTL 5	12.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	19	23188586	68188586	Rat
1549835	Tcas7	Tongue tumor susceptibility QTL 7		0.001	tongue integrity trait (VT:0010553)	squamous cell carcinoma of the head and neck tumor number (CMO:0001876)	19	41722546	74246245	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2194317	74246245	Rat
1354633	Bw28	Body weight QTL 28	6.04		body mass (VT:0001259)	body weight (CMO:0000012)	19	40727092	54856850	Rat
8552935	Pigfal10	Plasma insulin-like growth factor 1 level QTL 10	5.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	19	7997750	52997750	Rat
631840	Niddm38	Non-insulin dependent diabetes mellitus QTL 38	3.86		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	19	10329076	74246245	Rat
1358200	Insglur2	Insulin/glucose ratio QTL 2	4.1		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	19	5748064	50748064	Rat
7411549	Bw130	Body weight QTL 130	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	32365311	74246245	Rat
724518	Uae19	Urinary albumin excretion QTL 19	5.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	24093973	69093973	Rat
61423	Cia14	Collagen induced arthritis QTL 14	3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	19	10833618	74246245	Rat
2303628	Vencon9	Ventilatory control QTL 9		0.005	respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	19	23188586	68188586	Rat
9590250	Scort11	Serum corticosterone level QTL 11	23.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	19	7997750	52997750	Rat
2317848	Alcrsp21	Alcohol response QTL 21	1.899999976158142	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	19	20109306	65109306	Rat
1354607	Gmadr1	Adrenal mass QTL 1	5.83		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	19	40727092	54856850	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2194317	74246245	Rat
1354600	Salc2	Saline consumption QTL 2	9.91	0.001	drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	19	40727092	54856850	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
10	9	25	58	46	46	15	41	15	6	151	90	2	40	30	51	31	12	12

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109129	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434590	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434591	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_197950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255523	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601342	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601343	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC106288	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000024125 ⟹ ENSRNOP00000024125

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	50,505,895 - 50,508,414 (+)	Ensembl
mRatBN7.2 Ensembl	19	33,596,616 - 33,598,521 (+)	Ensembl
Rnor_6.0 Ensembl	19	37,675,113 - 37,677,073 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000099052 ⟹ ENSRNOP00000076658

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	50,505,546 - 50,508,414 (+)	Ensembl
mRatBN7.2 Ensembl	19	33,595,995 - 33,598,521 (+)	Ensembl

RefSeq Acc Id:

NM_001109129 ⟹ NP_001102599

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	50,506,505 - 50,508,414 (+)	NCBI
mRatBN7.2	19	33,596,616 - 33,598,525 (+)	NCBI
Rnor_6.0	19	37,675,166 - 37,677,075 (+)	NCBI
Rnor_5.0	19	48,541,407 - 48,543,997 (+)	NCBI
RGSC_v3.4	19	35,540,429 - 35,542,338 (+)	RGD
Celera	19	33,024,563 - 33,026,472 (+)	RGD

Sequence:

show sequence

AGGAGCGAGTCTAAGTCTCGGGTCGCAACAGGATCCTTACCTCTCAACCTGTCTCCCCTACCAA
CACTGAGCACCGGTCCAGCCCTGCTCTGGGCCTGCGGTCTTCTCTGAGCAACCGTCGAGGGATG
CATTGATTCCTGCCATGGCCTCAGCAGGGGCCAAGAGGCAGCCAGAAGCCCAGAATGGGGCAGC
AGTAGGGTTAGCCCAGGTTGCAGAGATCCCTGAGTGTCCAGGAACAGAAGAGTGTCTGGTGCCA
GCACACGAGACCTGCAGCACTCCAGGTGAAGACAGGTGTCCAGTAGGACACAGCTTAGAGCCAG
AGCTCCAGGAGGAAGGAATAAACCTGGGAGAGGAAGGGCTCAATCCAGGGGTGGAAGCAGGAGA
GGAGAGAGGACCCAAGCCTACATCATCCATCGTGAGGCCAGCTCATGGGCCCAAGAGAAAGGCA
GAGGCCGAACTGCCACCAGGGCTGCTGCTACAGAAGGAGGAGCCAGAAGGCAGCCACAGTGAAT
CCTCGCTGTCATCTAAACAGCACAAAAAAGCCAAGAAACGCAAGAGTGTAGGGGCTCCTGTGCC
CCCAGCTGTGGCCAGCGCATCTGCACCCACAGAGACCTTGGGGCTGGAGCCCTTTGCTGTGCCT
TGGGTTCTTGCAGGAAAAGCCCAGCGCCTGCGGCCACTGTACCAGTACATCAACTATTGCAACC
CAGAGCTGAATCAGGCAGGGGATGGGGACAGGGAACCGGAGGCTGAGCCTGAGTCGGAGTTAGC
CCTGGCTCCTGAGGAGGCAGGTGTGGAGCAGCTGCAGCTGCAGACCTTGCTGCCCATGGCAGGT
GAGCTGGGCTTAGGCCTTGCTTTGCCCTGCCCTAATCCATTAGCACCACTGACCCATAATCTTC
CTCCTCTGGTAGAGGAGGTTGGAGAGGAGCCTGGGGGTTTGTCTAGTCTAAGGGTGAGTGGCAG
CCTCAAGGCTGAGGTGGATAAGACAACCCAAGTGGATATTGACAAGATGTTGAGTGTCTGTGCT
GCCCCTCTTGTGCCCCCGCTGTCCCCTCAGTACAAGTGACCCATTGAGAATGTCCGGGTCTAGG
CCTAAACTATGGCTTTAAGCCCGTAGGCCTAAGCCATCAGATGGAAGAAGGGATTTAGTCTTTT
GTCTATACTTGAGAATTTACGCTCACTGAAAATAAACATTTACCCCCTTTG

hide sequence

RefSeq Acc Id:

XM_006255523 ⟹ XP_006255585

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	50,506,582 - 50,508,415 (+)	NCBI
mRatBN7.2	19	33,596,599 - 33,598,702 (+)	NCBI
Rnor_6.0	19	37,675,226 - 37,677,280 (+)	NCBI
Rnor_5.0	19	48,541,407 - 48,543,997 (+)	NCBI

Sequence:

show sequence

CCAACACTGAGCACCGGTCCAGCCCTGCTCTGGGCCTGCGGTCTTCTCTGAGCAACCGTCGAGG
GATGCATTGATTCCTGCCATGGCCTCAGCAGGGGCCAAGAGGCAGCCAGAAGCCCAGAATGGGG
CAGCAGTAGGGTTAGCCCAGGTTGCAGAGATCCCTGAGTGTCCAGGAACAGAAGAGTGTCTGGT
GCCAGCACACGAGACCTGCAGCACTCCAGGTGAAGACAGGTGTCCAGTAGGACACAGCTTAGAG
CCAGAGCTCCAGGAGGAAGGAATAAACCTGGGAGAGGAAGGGCTCAATCCAGGGGTGGAAGCAG
GAGAGGAGAGAGGACCCAAGCCTACATCATCCATCGTGAGGCCAGCTCATGGGCCCAAGAGAAA
GCCTCTTGTCCCAGGCTTGAGTACCCCAGCCCTCCCAGGGCAAAGCTACCATGCCCATCCTAGG
GCAGAGGCCGAACTGCCACCAGGGCTGCTGCTACAGAAGGAGGAGCCAGAAGGCAGCCACAGTG
AATCCTCGCTGTCATCTAAACAGCACAAAAAAGCCAAGAAACGCAAGAGTGTAGGGGCTCCTGT
GCCCCCAGCTGTGGCCAGCGCATCTGCACCCACAGAGACCTTGGGGCTGGAGCGAAAAGCCCAG
CGCCTGCGGCCACTGTACCAGTACATCAACTATTGCAACCCAGAGCTGAATCAGGCAGGGGATG
GGGACAGGGAACCGGAGGCTGAGCCTGAGTCGGAGTTAGCCCTGGCTCCTGAGGAGGCAGGTGT
GGAGCAGCTGCAGCTGCAGACCTTGCTGCCCATGGCAGGTGAGCTGGGCTTAGGCCTTGCTTTG
CCCTGCCCTAATCCATTAGCACCACTGACCCATAATCTTCCTCCTCTGGTAGAGGAGGTTGGAG
AGGAGCCTGGGGGTTTGTCTAGTCTAAGGGTGAGTGGCAGCCTCAAGGCTGAGGTGGATAAGAC
AACCCAAGTGGATATTGACAAGATGTTGAGTGTCTGTGCTGCCCCTCTTGTGCCCCCGCTGTCC
CCTCAGTACAAGTGACCCATTGAGAATGTCCGGGTCTAGGCCTAAACTATGGCTTTAAGCCCGT
AGGCCTAAGCCATCAGATGGAAGAAGGGATTTAGTCTTTTGTCTATACTTGAGAATTTACGCTC
ACTGAAAATAAACATTTACCCCCTTTGAGACTGATTCTTCAAATATGATGCCTGAATCAGGAAA
GAGGTTGGGGAGAAGGGAGGATGACTGATTATTTGGAACAGTGGGGACCTTGAACGACAGATTC
CTGAGCACTACCCAGACTTGTGTCAGAGTGTATGTCTATTCACTCTAGACTGGGAGCCCACAGC
AGATCAAAGAACATACACCACCAAAGTCCAACTACAGGGA

hide sequence

RefSeq Acc Id:

XM_017601342 ⟹ XP_017456831

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	50,506,582 - 50,508,415 (+)	NCBI
mRatBN7.2	19	33,596,591 - 33,598,703 (+)	NCBI
Rnor_6.0	19	37,675,226 - 37,677,280 (+)	NCBI

Sequence:

show sequence

CCAACACTGAGCACCGGTCCAGCCCTGCTCTGGGCCTGCGGTCTTCTCTGAGCAACCGTCGAGG
GATGCATTGATTCCTGCCATGGCCTCAGCAGGGGCCAAGAGGCAGCCAGAAGCCCAGAATGGGG
CAGCAGTAGGGTTAGCCCAGGTTGCAGAGATCCCTGAGTGTCCAGGAACAGAAGAGTGTCTGGT
GCCAGCACACGAGACCTGCAGCACTCCAGGTGAAGACAGGTGTCCAGTAGGACACAGCTTAGAG
CCAGAGCTCCAGGAGGAAGGAATAAACCTGGGAGAGGAAGGGCTCAATCCAGGGGTGGAAGCAG
GAGAGGAGAGAGGACCCAAGCCTACATCATCCATCGTGAGGCCAGCTCATGGGCCCAAGAGAAA
GCCTCTTGTCCCAGGCTTGAGTACCCCAGCCCTCCCAGGGCAAAGCTACCATGCCCATCCTAGG
GCAGAGGCCGAACTGCCACCAGGGCTGCTGCTACAGAAGGAGGAGCCAGAAGGCAGCCACAGTG
AATCCTCGCTGTCATCTAAACAGCACAAAAAAGCCAAGAAACGCAAGAGTGTAGGGGCTCCTGT
GCCCCCAGCTGTGGCCAGCGCATCTGCACCCACAGAGACCTTGGGGCTGGAGCCCTTTGCTGTG
CCTTGGGTTCTTGCAGGAAAAGCCCAGCGCCTGCGGCCACTGTACCAGTACATCAACTATTGCA
ACCCAGAGCTGAATCAGGCAGGGGATGGGGACAGGGAACCGGAGGCTGAGCCTGAGTCGGAGTT
AGCCCTGGCTCCTGAGGAGGCAGGTGTGGAGCAGCTGCAGCTGCAGACCTTGCTGCCCATGGCA
GGTGAGCTGGGCTTAGGCCTTGCTTTGCCCTGCCCTAATCCATTAGCACCACTGACCCATAATC
TTCCTCCTCTGGTAGAGGAGGTTGGAGAGGAGCCTGGGGGTTTGTCTAGTCTAAGGGTGAGTGG
CAGCCTCAAGGCTGAGGTGGATAAGACAACCCAAGTGGATATTGACAAGATGTTGAGTGTCTGT
GCTGCCCCTCTTGTGCCCCCGCTGTCCCCTCAGTACAAGTGACCCATTGAGAATGTCCGGGTCT
AGGCCTAAACTATGGCTTTAAGCCCGTAGGCCTAAGCCATCAGATGGAAGAAGGGATTTAGTCT
TTTGTCTATACTTGAGAATTTACGCTCACTGAAAATAAACATTTACCCCCTTTGAGACTGATTC
TTCAAATATGATGCCTGAATCAGGAAAGAGGTTGGGGAGAAGGGAGGATGACTGATTATTTGGA
ACAGTGGGGACCTTGAACGACAGATTCCTGAGCACTACCCAGACTTGTGTCAGAGTGTATGTCT
ATTCACTCTAGACTGGGAGCCCACAGCAGATCAAAGAACATACACCACCAAAGTCCAACTACAG
GGA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001102599	(Get FASTA)	NCBI Sequence Viewer
	NP_001421519	(Get FASTA)	NCBI Sequence Viewer
	NP_001421520	(Get FASTA)	NCBI Sequence Viewer
	XP_006255585	(Get FASTA)	NCBI Sequence Viewer
	XP_017456831	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	D3ZAQ5	(Get FASTA)	NCBI Sequence Viewer
	EDL92399	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000024125

RefSeq Acc Id:

NP_001102599 ⟸ NM_001109129

- Sequence:

show sequence

MASAGAKRQPEAQNGAAVGLAQVAEIPECPGTEECLVPAHETCSTPGEDRCPVGHSLEPELQEE
GINLGEEGLNPGVEAGEERGPKPTSSIVRPAHGPKRKAEAELPPGLLLQKEEPEGSHSESSLSS
KQHKKAKKRKSVGAPVPPAVASASAPTETLGLEPFAVPWVLAGKAQRLRPLYQYINYCNPELNQ
AGDGDREPEAEPESELALAPEEAGVEQLQLQTLLPMAGELGLGLALPCPNPLAPLTHNLPPLVE
EVGEEPGGLSSLRVSGSLKAEVDKTTQVDIDKMLSVCAAPLVPPLSPQYK

hide sequence

RefSeq Acc Id:

XP_006255585 ⟸ XM_006255523

- Peptide Label:

isoform X2

- Sequence:

show sequence

MASAGAKRQPEAQNGAAVGLAQVAEIPECPGTEECLVPAHETCSTPGEDRCPVGHSLEPELQEE
GINLGEEGLNPGVEAGEERGPKPTSSIVRPAHGPKRKPLVPGLSTPALPGQSYHAHPRAEAELP
PGLLLQKEEPEGSHSESSLSSKQHKKAKKRKSVGAPVPPAVASASAPTETLGLERKAQRLRPLY
QYINYCNPELNQAGDGDREPEAEPESELALAPEEAGVEQLQLQTLLPMAGELGLGLALPCPNPL
APLTHNLPPLVEEVGEEPGGLSSLRVSGSLKAEVDKTTQVDIDKMLSVCAAPLVPPLSPQYK

hide sequence

RefSeq Acc Id:

XP_017456831 ⟸ XM_017601342

- Peptide Label:

isoform X1

- Sequence:

show sequence

MASAGAKRQPEAQNGAAVGLAQVAEIPECPGTEECLVPAHETCSTPGEDRCPVGHSLEPELQEE
GINLGEEGLNPGVEAGEERGPKPTSSIVRPAHGPKRKPLVPGLSTPALPGQSYHAHPRAEAELP
PGLLLQKEEPEGSHSESSLSSKQHKKAKKRKSVGAPVPPAVASASAPTETLGLEPFAVPWVLAG
KAQRLRPLYQYINYCNPELNQAGDGDREPEAEPESELALAPEEAGVEQLQLQTLLPMAGELGLG
LALPCPNPLAPLTHNLPPLVEEVGEEPGGLSSLRVSGSLKAEVDKTTQVDIDKMLSVCAAPLVP
PLSPQYK

hide sequence

Ensembl Acc Id:

ENSRNOP00000024125 ⟸ ENSRNOT00000024125

Ensembl Acc Id:

ENSRNOP00000076658 ⟸ ENSRNOT00000099052

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZAQ5-F1-model_v2	AlphaFold	D3ZAQ5	1-306	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1561415	AgrOrtholog
BioCyc Gene	G2FUF-5815	BioCyc
Ensembl Genes	ENSRNOG00000017867	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000024125	ENTREZGENE
InterPro	DUF4691	UniProtKB/Swiss-Prot
KEGG Report	rno:498943	UniProtKB/Swiss-Prot
NCBI Gene	498943	ENTREZGENE
PANTHER	CHROMOSOME 16 OPEN READING FRAME 86	UniProtKB/Swiss-Prot
	PTHR37867	UniProtKB/Swiss-Prot
Pfam	DUF4691	UniProtKB/Swiss-Prot
PhenoGen	C19h16orf86	PhenoGen
RatGTEx	ENSRNOG00000017867	RatGTEx
UniProt	A0A0H2UHP2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5YBT7	ENTREZGENE, UniProtKB/TrEMBL
	CP086_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-08-12	C19h16orf86	similar to human chromosome 16 open reading frame 86	RGD1561415	RGD1561415	Name and Symbol changed	629549	APPROVED
2008-04-30	RGD1561415	RGD1561415	RGD1561415_predicted	RGD1561415 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1561415_predicted	RGD1561415 (predicted)	LOC498943	LOC498943	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC498943	LOC498943			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message