Ifna1l1 (interferon, alpha 1 like 1) - Rat Genome Database

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Gene: Ifna1l1 (interferon, alpha 1 like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Ifna1l1
Name: interferon, alpha 1 like 1
RGD ID: 1561246
Description:
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: If1ai5; interferon 1ai5; interferon alpha-5-like; LOC502959; RGD1561246; similar to put. precursor MuIFN-alpha 5
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85108,190,397 - 108,191,151 (-)NCBIGRCr8
mRatBN7.25103,144,515 - 103,145,269 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.05106,996,094 - 106,996,722 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05110,972,455 - 110,973,024 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45107,968,085 - 107,968,654 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera599,973,088 - 99,973,716 (+)NCBICelera
Cytogenetic Map5q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



#
Reference Title
Reference Citation
1. GOA pipeline RGD automated data pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions


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Variants in Ifna1l1
3 total Variants


Assembly: mRatBN7.2
Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
5 103145174 103145175 A T snv European Variation Archive Release 3, European Variation Archive Release 4, European Variation Archive Release 6, ACI/EurMcwi (2019), ACI/N (2020), BUF/N (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), LEXF2B/Stm (2019), LE/Stm (2019), MWF/Hsd (2019), PVG/Seac (2019), ACI/EurMcwi (2019NG), BUF/MnaMcwi (2022), DA/OlaHsd (2019NG), F344/DuCrl (2019NG), F344/DuCrl (2021), F344/NHsd (2021), F344/StmMcwi (2019), M520/NRrrcMcwi (2019NG), MWF/SimwMcwi (2019NG), MWF/SimwMcwi (2019), FXLE12/StmMcwi (2023), FXLE16/Stm (2020), FXLE18/Stm (2020), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), SR/JrHsd (2020), F344/DuCrl (2019NG), FXLE12/StmMcwi (2021), FXLE12/Stm (2019NG), FXLE13/Stm (2019NG), FXLE14/Stm (2019NG), FXLE15/StmMcwi (2021), FXLE15/Stm (2019NG), FXLE17/Stm (2019NG), FXLE19/StmMcwi (2022), FXLE20/Stm (2019NG), FXLE23/Stm (2022), FXLE25/Stm (2022), FXLE26/Stm (2022), LEW/Crl (2019NG), LEXF10B/StmMcwi (2022), LEXF10C/Stm (2022), LEXF1C/StmMcwi (2021), LEXF2A/Stm (2022), LEXF2C/StmMcwi (2022), LEXF5/Stm (2019NG), LEXF6B/Stm (2019NG), LEXF7A/Stm (2019NG), LEXF7B/StmMcwi (2022), LEXF7C/StmMcwi (2022), LEXF8A/StmMcwi (2021), LEXF8D/Stm (2022), LEXF9/StmMcwi (2022), RCS/LavRrrcMcwi (2021), LEXF2A/StmMcwi (2023), FXLE26/StmMcwi (2023), FXLE13/StmMcwi (2023), LEXF5/StmMcwi (2023), FXLE22/StmMcwi (2023), FXLE20/StmMcwi (2023), LEXF8D/StmMcwi (2023), FXLE23/StmMcwi (2023), FXLE25/StmMcwi (2023), LEXF10C/StmMcwi (2023), FXLE17/StmMcwi (2023), LEXF6B/StmMcwi (2023), FXLE15/StmMcwi (2023), FXLE14/StmMcwi (2023), FXLE21/StmMcwi (2023) View more Information


1 to 10 of 43 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1357396Bw44Body weight QTL 444.19body mass (VT:0001259)body weight (CMO:0000012)568984307104251008Rat
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)597059760147465714Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
61380Edpm5Estrogen-dependent pituitary mass QTL 54.50.92pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)568984307104251008Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1298070Scl18Serum cholesterol level QTL 183.7blood LDL cholesterol amount (VT:0000181)calculated plasma low density lipoprotein cholesterol level (CMO:0001245)579584860124584860Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)594858972143070159Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
1357402Bw46Body weight QTL 464.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)568984307104251008Rat

1 to 10 of 43 rows






RefSeq Acc Id: NM_001409048   ⟹   NP_001395977
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85108,190,397 - 108,191,151 (-)NCBI
mRatBN7.25103,144,515 - 103,145,269 (-)NCBI
Protein RefSeqs NP_001395977 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAB0000184 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001395977   ⟸   NM_001409048
- Peptide Label: precursor
- UniProtKB: A0A7R8C3J7 (UniProtKB/TrEMBL)



1 to 14 of 14 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-40818 BioCyc
Gene3D-CATH 1.20.1250.10 UniProtKB/TrEMBL
InterPro 4_helix_cytokine-like_core UniProtKB/TrEMBL
  Interferon_alpha/beta/delta UniProtKB/TrEMBL
NCBI Gene 502959 ENTREZGENE
PANTHER ALPHA-INTERFERON-RELATED UniProtKB/TrEMBL
  PTHR11691 UniProtKB/TrEMBL
Pfam Interferon UniProtKB/TrEMBL
PhenoGen Ifna1l1 PhenoGen
PRINTS INTERFERONAB UniProtKB/TrEMBL
PROSITE INTERFERON_A_B_D UniProtKB/TrEMBL
SMART IFabd UniProtKB/TrEMBL
Superfamily-SCOP SSF47266 UniProtKB/TrEMBL
UniProt A0A7R8C3J7 ENTREZGENE, UniProtKB/TrEMBL
1 to 14 of 14 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Ifna1l1  interferon, alpha 1 like 1  RGD1561246  similar to put. precursor MuIFN-alpha 5  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1561246  similar to put. precursor MuIFN-alpha 5   RGD1561246_predicted  similar to put. precursor MuIFN-alpha 5 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1561246_predicted  similar to put. precursor MuIFN-alpha 5 (predicted)  LOC502959  similar to put. precursor MuIFN-alpha 5  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC502959  similar to put. precursor MuIFN-alpha 5      Symbol and Name status set to provisional 70820 PROVISIONAL