Smarca1 (SNF2 related chromatin remodeling ATPase 1) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Smarca1 (SNF2 related chromatin remodeling ATPase 1) Rattus norvegicus
Analyze
Symbol: Smarca1
Name: SNF2 related chromatin remodeling ATPase 1 (Ensembl:SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1)
RGD ID: 1561046
Description: Predicted to enable ATP-dependent activity, acting on DNA; RNA polymerase II-specific DNA-binding transcription factor binding activity; and chromatin binding activity. Predicted to contribute to ATP-dependent chromatin remodeler activity. Predicted to be involved in heterochromatin formation; neuron differentiation; and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within brain development and regulation of neural precursor cell proliferation. Predicted to be part of CERF complex and NURF complex. Predicted to be active in chromatin and nucleus. Orthologous to human SMARCA1 (SNF2 related chromatin remodeling ATPase 1); PARTICIPATES IN ISWI family mediated chromatin remodeling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2-methoxyethanol; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC317575; probable global transcription activator SNF2L1; RGD1561046; similar to Smarca1 protein; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X131,858,148 - 131,944,639 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX131,859,088 - 131,944,282 (-)EnsemblGRCr8
mRatBN7.2X126,980,201 - 127,066,385 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX126,994,947 - 127,066,347 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX129,115,075 - 129,192,859 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X132,685,491 - 132,763,196 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X130,212,211 - 130,289,995 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X134,634,651 - 134,719,503 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX134,647,703 - 134,719,097 (-)Ensemblrn6Rnor6.0
Rnor_5.0X134,707,434 - 134,791,566 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X134,177,345 - 134,249,029 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX125,946,308 - 126,012,001 (-)NCBICelera
Cytogenetic MapXq35NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
CERF complex  (IEA,ISO)
chromatin  (IBA,IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,IEA,ISO)
NURF complex  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ATP-dependent chromatin remodeling: genetics, genomics and mechanisms. Hargreaves DC and Crabtree GR, Cell Res. 2011 Mar;21(3):396-420. doi: 10.1038/cr.2011.32. Epub 2011 Mar 1.
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:14609955   PMID:15640247   PMID:20850016   PMID:22516202   PMID:22705370   PMID:27141965  


Genomics

Comparative Map Data
Smarca1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X131,858,148 - 131,944,639 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX131,859,088 - 131,944,282 (-)EnsemblGRCr8
mRatBN7.2X126,980,201 - 127,066,385 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX126,994,947 - 127,066,347 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX129,115,075 - 129,192,859 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X132,685,491 - 132,763,196 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X130,212,211 - 130,289,995 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X134,634,651 - 134,719,503 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX134,647,703 - 134,719,097 (-)Ensemblrn6Rnor6.0
Rnor_5.0X134,707,434 - 134,791,566 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X134,177,345 - 134,249,029 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX125,946,308 - 126,012,001 (-)NCBICelera
Cytogenetic MapXq35NCBI
SMARCA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X129,446,506 - 129,523,490 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX129,446,501 - 129,523,947 (-)Ensemblhg38GRCh38
GRCh37X128,580,483 - 128,657,467 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X128,408,159 - 128,485,122 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34X128,306,012 - 128,382,976NCBI
CeleraX128,969,174 - 129,046,159 (-)NCBICelera
Cytogenetic MapXq25-q26.1NCBI
HuRefX117,987,239 - 118,059,634 (-)NCBIHuRef
CHM1_1X128,491,871 - 128,568,824 (-)NCBICHM1_1
T2T-CHM13v2.0X127,765,288 - 127,842,272 (-)NCBIT2T-CHM13v2.0
Smarca1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X46,898,247 - 46,981,490 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX46,898,245 - 46,981,851 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38X47,809,370 - 47,892,613 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX47,809,368 - 47,892,974 (-)Ensemblmm10GRCm38
MGSCv37X45,162,547 - 45,245,729 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36X44,053,997 - 44,137,146 (-)NCBIMGSCv36mm8
CeleraX35,318,277 - 35,394,449 (-)NCBICelera
Cytogenetic MapXA4NCBI
cM MapX25.41NCBI
Smarca1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554735,498,674 - 5,573,169 (+)Ensembl
ChiLan1.0NW_0049554735,498,738 - 5,572,863 (+)NCBIChiLan1.0ChiLan1.0
SMARCA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X128,870,571 - 128,949,739 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X128,874,185 - 128,951,225 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X118,577,295 - 118,654,326 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X128,875,334 - 128,952,204 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX128,875,334 - 128,952,900 (-)EnsemblpanPan2panpan1.1
SMARCA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X100,678,457 - 100,749,216 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX100,679,942 - 100,749,651 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_TashaX86,845,498 - 86,918,086 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0X102,524,025 - 102,596,588 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX102,524,025 - 102,596,704 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X99,941,623 - 100,014,434 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X101,786,630 - 101,859,641 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X101,565,278 - 101,638,177 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Smarca1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X98,876,999 - 98,956,698 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364792,030,716 - 2,110,661 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364792,030,788 - 2,110,501 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SMARCA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX106,039,969 - 106,116,139 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1X106,039,961 - 106,116,156 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X121,756,253 - 121,832,168 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SMARCA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X104,690,937 - 104,768,326 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX104,690,689 - 104,768,298 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606542,175,535 - 42,253,073 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Smarca1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247978,626,742 - 8,710,845 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247978,627,048 - 8,710,540 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Smarca1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1X110,533,211 - 110,603,429 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Smarca1
227 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:119
Count of miRNA genes:103
Interacting mature miRNAs:106
Transcripts:ENSRNOT00000068478
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X97528096142528096Rat
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X120028026141353710Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X120028026141353710Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX105359969157758123Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X118973754157758123Rat
2302047Pia34Pristane induced arthritis QTL 345.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1996916163141916163Rat

Markers in Region
D17Rat146  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8X131,876,313 - 131,876,520 (+)Marker Load Pipeline
mRatBN7.2X126,998,364 - 126,998,571 (+)MAPPERmRatBN7.2
Rnor_6.0X134,651,097 - 134,651,302NCBIRnor6.0
Rnor_5.0X134,723,898 - 134,724,103UniSTSRnor5.0
RGSC_v3.4X134,180,506 - 134,180,713RGDRGSC3.4
RGSC_v3.4X134,180,507 - 134,180,713UniSTSRGSC3.4
CeleraX125,949,470 - 125,949,676UniSTS
RGSC_v3.1X134,253,939 - 134,254,146RGD
SHRSP x BN Map1728.1999UniSTS
SHRSP x BN Map1728.1999RGD
Cytogenetic MapXq35UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
15 11 67 158 91 90 59 31 59 6 290 130 11 137 78 92 31 15 15

Sequence


Ensembl Acc Id: ENSRNOT00000068478   ⟹   ENSRNOP00000060122
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX131,873,160 - 131,944,282 (-)Ensembl
mRatBN7.2 EnsemblX126,995,203 - 127,066,347 (-)Ensembl
Rnor_6.0 EnsemblX134,647,703 - 134,719,097 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000114801   ⟹   ENSRNOP00000092494
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX131,873,659 - 131,944,282 (-)Ensembl
mRatBN7.2 EnsemblX126,994,947 - 127,066,223 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000115795   ⟹   ENSRNOP00000077868
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX131,874,361 - 131,944,282 (-)Ensembl
mRatBN7.2 EnsemblX126,994,947 - 127,058,453 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000139301   ⟹   ENSRNOP00000103474
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX131,859,088 - 131,944,282 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000155509   ⟹   ENSRNOP00000104293
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX131,873,152 - 131,944,282 (-)Ensembl
RefSeq Acc Id: NM_001271190   ⟹   NP_001258119
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X131,873,152 - 131,944,282 (-)NCBI
mRatBN7.2X126,995,203 - 127,066,347 (-)NCBI
Rnor_6.0X134,647,935 - 134,719,114 (-)NCBI
Rnor_5.0X134,707,434 - 134,791,566 (-)NCBI
CeleraX125,946,308 - 126,012,001 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006257525   ⟹   XP_006257587
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X131,873,155 - 131,944,343 (-)NCBI
mRatBN7.2X126,995,360 - 127,066,384 (-)NCBI
Rnor_6.0X134,648,092 - 134,719,502 (-)NCBI
Rnor_5.0X134,707,434 - 134,791,566 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006257526   ⟹   XP_006257588
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X131,858,148 - 131,944,630 (-)NCBI
mRatBN7.2X126,980,201 - 127,066,385 (-)NCBI
Rnor_6.0X134,634,651 - 134,719,503 (-)NCBI
Rnor_5.0X134,707,434 - 134,791,566 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006257527   ⟹   XP_006257589
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X131,873,505 - 131,944,629 (-)NCBI
mRatBN7.2X126,994,944 - 127,066,385 (-)NCBI
Rnor_6.0X134,648,337 - 134,719,502 (-)NCBI
Rnor_5.0X134,707,434 - 134,791,566 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063280086   ⟹   XP_063136156
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X131,873,155 - 131,944,630 (-)NCBI
RefSeq Acc Id: XM_063280087   ⟹   XP_063136157
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X131,873,155 - 131,944,628 (-)NCBI
RefSeq Acc Id: XM_063280088   ⟹   XP_063136158
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X131,858,148 - 131,944,321 (-)NCBI
RefSeq Acc Id: XR_010061202
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X131,874,678 - 131,944,639 (-)NCBI
RefSeq Acc Id: NP_001258119   ⟸   NM_001271190
- UniProtKB: D3ZIE5 (UniProtKB/TrEMBL),   A6JMN9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006257588   ⟸   XM_006257526
- Peptide Label: isoform X3
- UniProtKB: A6JMN9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006257587   ⟸   XM_006257525
- Peptide Label: isoform X2
- UniProtKB: A6JMN9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006257589   ⟸   XM_006257527
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AH59 (UniProtKB/TrEMBL),   A6JMN9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000060122   ⟸   ENSRNOT00000068478
Ensembl Acc Id: ENSRNOP00000077868   ⟸   ENSRNOT00000115795
Ensembl Acc Id: ENSRNOP00000092494   ⟸   ENSRNOT00000114801
RefSeq Acc Id: XP_063136158   ⟸   XM_063280088
- Peptide Label: isoform X5
- UniProtKB: A6JMN9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136156   ⟸   XM_063280086
- Peptide Label: isoform X1
- UniProtKB: D3ZIE5 (UniProtKB/TrEMBL),   A6JMN9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136157   ⟸   XM_063280087
- Peptide Label: isoform X2
- UniProtKB: A6JMN9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000104293   ⟸   ENSRNOT00000155509
Ensembl Acc Id: ENSRNOP00000103474   ⟸   ENSRNOT00000139301
Protein Domains
Helicase ATP-binding   Helicase C-terminal   SANT

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZIE5-F1-model_v2 AlphaFold D3ZIE5 1-1057 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13702007
Promoter ID:EPDNEW_R12531
Type:single initiation site
Name:Smarca1_1
Description:SWI/SNF related, matrix associated, actin dependent regulatorof chromatin, subfamily a, member 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X134,719,092 - 134,719,152EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561046 AgrOrtholog
BioCyc Gene G2FUF-1147 BioCyc
Ensembl Genes ENSRNOG00000003762 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000068478 ENTREZGENE
  ENSRNOT00000068478.5 UniProtKB/TrEMBL
  ENSRNOT00000114801.2 UniProtKB/TrEMBL
  ENSRNOT00000115795 ENTREZGENE
  ENSRNOT00000115795.2 UniProtKB/TrEMBL
  ENSRNOT00000139301 ENTREZGENE
  ENSRNOT00000139301.1 UniProtKB/TrEMBL
  ENSRNOT00000155509 ENTREZGENE
  ENSRNOT00000155509.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1040.30 UniProtKB/TrEMBL
  3.40.50.10810 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
  iswi atpase UniProtKB/TrEMBL
InterPro ATPase_nucl-remodel_HAND-dom UniProtKB/TrEMBL
  DEAD-like_N UniProtKB/TrEMBL
  DNA/RNA_helicase_C UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
  ISWI_HAND-dom_sf UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  SANT_DNA-bd UniProtKB/TrEMBL
  SANT_eukarya UniProtKB/TrEMBL
  SLIDE UniProtKB/TrEMBL
  SMARCA1_N UniProtKB/TrEMBL
  SNF2-like_sf UniProtKB/TrEMBL
  SNF2/RAD54-like_C UniProtKB/TrEMBL
  SNF2_N UniProtKB/TrEMBL
KEGG Report rno:317575 UniProtKB/TrEMBL
NCBI Gene 317575 ENTREZGENE
PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED UniProtKB/TrEMBL
  SWI_SNF RELATED, MATRIX ASSOCIATED, ACTIN DEPENDENT REGULATOR OF CHROMATIN, SUBFAMILY A, MEMBER 1 UniProtKB/TrEMBL
Pfam HAND UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  SLIDE UniProtKB/TrEMBL
  SNF2_N UniProtKB/TrEMBL
PhenoGen Smarca1 PhenoGen
PROSITE HELICASE_ATP_BIND_1 UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/TrEMBL
  SANT UniProtKB/TrEMBL
RatGTEx ENSRNOG00000003762 RatGTEx
SMART DEXDc UniProtKB/TrEMBL
  HELICc UniProtKB/TrEMBL
  SANT UniProtKB/TrEMBL
Superfamily-SCOP Homeodomain_like UniProtKB/TrEMBL
  Nucl_remodel_ATPase_ISWI_HAND UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A8I5YCJ3_RAT UniProtKB/TrEMBL
  A0A8I6AH59 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LP15_RAT UniProtKB/TrEMBL
  A0ABK0LUG8_RAT UniProtKB/TrEMBL
  A6JMN9 ENTREZGENE, UniProtKB/TrEMBL
  D3ZIE5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-11-08 Smarca1  SNF2 related chromatin remodeling ATPase 1  Smarca1  SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Smarca1  SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1   Smarca1_predicted  SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Smarca1_predicted  SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 (predicted)  RGD1561046_predicted  similar to Smarca1 protein (predicted)  Symbol and Name updated 1299863 APPROVED
2006-03-07 RGD1561046_predicted  similar to Smarca1 protein (predicted)  LOC317575  similar to Smarca1 protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC317575  similar to Smarca1 protein      Symbol and Name status set to provisional 70820 PROVISIONAL