D17Rat146 Marker Search Result - Rat Genome Database

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Marker: D17Rat146

Symbol: D17Rat146
Previously known as: R0298-D09; oxsts9851; 
RGD ID: 41778
Expected Size: 200 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X126,998,364 - 126,998,571 (+)MAPPERmRatBN7.2
Rnor_6.0X134,651,097 - 134,651,302NCBIRnor6.0
Rnor_5.0X134,723,898 - 134,724,103UniSTSRnor5.0
RGSC_v3.4X134,180,506 - 134,180,713RGDRGSC3.4
RGSC_v3.4X134,180,507 - 134,180,713UniSTSRGSC3.4
RGSC_v3.1X134,253,939 - 134,254,146RGD
CeleraX125,949,470 - 125,949,676UniSTS
SHRSP x BN Map1728.1999RGD
SHRSP x BN Map1728.1999UniSTS
Cytogenetic MapXq35UniSTS
Is Marker For: Strains:   AVN/Orl   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
Genes:   Smarca1  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GATGTAGTTCAGTGGGAGAGCA
Reverse Primer CTGCACTCATGTGTGCACAA
 
Template 
TAGAGGATCCCCACAAGAATTTTTTCTTTTAAGTTTCAAGAGTTGAAGATGTAGTTCAGTGGGA
GAGCACTTGTGAACCTGTCTAGCAATATACATGGGCGCGCGNGTGTGTGTGCGCACACACACAC
CACACACACACACACAATTTGTTTTCTGAAACCAAGGCTAAAAAAATGGGAAGCAAACAAAGCT
ATTTCTATTCACATTAGTAGTGGTGTGCCCGTGNTTTGTGCACACATGAGTGCAGTGTGTGTGG
GTACCGAGCTCGAATTCCGTAATCCATGGTTCATAGNTGTTTCCTGTGTGAAATTGTTATCCGC
TCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGT
GAGCTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGC
CAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGGGCGCCAGGGTG
GTTTTTCTTTTCACCAGTGAGACGGGCAACAGCTGATTGCCCTTCACCGCCTGGCCCTGAGAGA
GTTGCAGCAAGCGGTCCACGCTGGTTTGCCCCAGCAGGCGAAAATCTGTTTGATGGTGGTTCGA
AATCGGCAAAATCCCTTATAAATCAAAAGAATAGCCCGAGATAGGGTTGAGTGTTGTTCCAGTT
TGGAACAAGAGTCACTATTAAAGAACGTGGACTCAACGTCNAGGGCGAAAACGTTATCGGGCGA
GGCACTAGTGAACATCCCNATCAGTTTTGGGGTGAGTGCGTAACATANTCGGNCCTAAGGGCNN
GNTAACTGAGGGAANGNGACGT

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1561046Smarca1SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1X126980201127066385Rat

Nucleotide Sequences
GenBank Nucleotide FT130701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X93956491138956491Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX100567703150256146Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X103312877148312877Rat
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X103312877148312877Rat
738029Stresp2Stress response QTL 23.40.0004stress-related behavior trait (VT:0010451)defensive burying - approachX112934952138400867Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X113937816152453651Rat
634346Insul4Insulin level QTL 40blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)X126975089152453651Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 317575 UniSTS
UniSTS 226851 UniSTS