Gtf2h5 (general transcription factor IIH subunit 5) - Rat Genome Database

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Gene: Gtf2h5 (general transcription factor IIH subunit 5) Rattus norvegicus
Analyze
Symbol: Gtf2h5
Name: general transcription factor IIH subunit 5
RGD ID: 1560991
Description: Predicted to be involved in nucleotide-excision repair, preincision complex assembly and transcription by RNA polymerase II. Predicted to act upstream of or within cellular response to gamma radiation and nucleic acid metabolic process. Predicted to be located in nucleolus. Predicted to be part of transcription factor TFIID complex; transcription factor TFIIH core complex; and transcription factor TFIIH holo complex. Human ortholog(s) of this gene implicated in photosensitive trichothiodystrophy 3. Orthologous to human GTF2H5 (general transcription factor IIH subunit 5); PARTICIPATES IN RNA polymerase II transcription initiation pathway; nucleotide excision repair pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: general transcription factor IIH, polypeptide 5; LOC502227; RGD1560991; similar to general transcription factor IIH, polypeptide 5
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8149,061,904 - 49,068,612 (+)NCBIGRCr8
mRatBN7.2146,656,804 - 46,663,512 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl146,656,859 - 46,664,939 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx147,205,928 - 47,212,502 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0153,193,190 - 53,199,764 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0147,281,356 - 47,287,930 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0146,978,345 - 46,985,032 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl146,978,458 - 46,985,032 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0148,280,850 - 48,287,542 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4140,858,997 - 40,865,571 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera142,346,319 - 42,352,893 (+)NCBICelera
Cytogenetic Map1q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. A history of TFIIH: two decades of molecular biology on a pivotal transcription/repair factor. Egly JM and Coin F, DNA Repair (Amst). 2011 Jul 15;10(7):714-21. doi: 10.1016/j.dnarep.2011.04.021. Epub 2011 May 17.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Nucleotide excision repair: new tricks with old bricks. Kamileri I, etal., Trends Genet. 2012 Nov;28(11):566-73. doi: 10.1016/j.tig.2012.06.004. Epub 2012 Jul 22.
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:12477932   PMID:23562818   PMID:23637614   PMID:27193682  


Genomics

Comparative Map Data
Gtf2h5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8149,061,904 - 49,068,612 (+)NCBIGRCr8
mRatBN7.2146,656,804 - 46,663,512 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl146,656,859 - 46,664,939 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx147,205,928 - 47,212,502 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0153,193,190 - 53,199,764 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0147,281,356 - 47,287,930 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0146,978,345 - 46,985,032 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl146,978,458 - 46,985,032 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0148,280,850 - 48,287,542 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4140,858,997 - 40,865,571 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera142,346,319 - 42,352,893 (+)NCBICelera
Cytogenetic Map1q11NCBI
GTF2H5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386158,168,350 - 158,199,344 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6158,168,350 - 158,199,344 (+)EnsemblGRCh38hg38GRCh38
GRCh376158,589,382 - 158,620,376 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366158,511,489 - 158,533,375 (+)NCBINCBI36Build 36hg18NCBI36
Build 346158,561,909 - 158,583,783NCBI
Celera6159,237,408 - 159,268,427 (+)NCBICelera
Cytogenetic Map6q25.3NCBI
HuRef6156,060,590 - 156,091,731 (+)NCBIHuRef
CHM1_16158,851,643 - 158,883,293 (+)NCBICHM1_1
T2T-CHM13v2.06159,413,734 - 159,444,757 (+)NCBIT2T-CHM13v2.0
Gtf2h5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39176,130,103 - 6,135,763 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl176,130,061 - 6,136,792 (+)EnsemblGRCm39 Ensembl
GRCm38176,079,828 - 6,085,488 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl176,079,786 - 6,086,517 (+)EnsemblGRCm38mm10GRCm38
MGSCv37176,079,828 - 6,085,488 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36176,036,347 - 6,041,961 (+)NCBIMGSCv36mm8
Celera176,617,614 - 6,623,290 (+)NCBICelera
Cytogenetic Map17A1NCBI
cM Map173.7NCBI
Gtf2h5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554394,226,530 - 4,234,261 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554394,226,530 - 4,234,390 (-)NCBIChiLan1.0ChiLan1.0
GTF2H5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25178,281,654 - 178,309,090 (+)NCBINHGRI_mPanPan1-v2
PanPan1.1 Ensembl6158,126,665 - 158,153,663 (+)Ensemblpanpan1.1panPan2
GTF2H5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1147,669,196 - 47,681,370 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl147,669,248 - 47,681,368 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha148,513,181 - 48,525,308 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0147,855,929 - 47,868,099 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl147,855,958 - 47,868,083 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1147,734,059 - 47,746,221 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0147,605,860 - 47,618,020 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0148,165,020 - 48,177,420 (+)NCBIUU_Cfam_GSD_1.0
Gtf2h5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946142,731,888 - 142,747,220 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364899,992,156 - 9,992,938 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364899,983,935 - 9,993,179 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GTF2H5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl18,917,240 - 8,934,983 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.118,928,280 - 8,935,030 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2110,900,665 - 10,907,424 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GTF2H5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl1385,771,630 - 85,782,646 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604058,139,835 - 58,152,711 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gtf2h5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478569,978 - 82,012 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478570,425 - 82,098 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gtf2h5
5 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:130
Count of miRNA genes:104
Interacting mature miRNAs:117
Transcripts:ENSRNOT00000024211
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1439328949393289Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)1985600154856001Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11099206555992065Rat
1300167Hrtrt2Heart rate QTL 24.35heart pumping trait (VT:2000009)heart rate (CMO:0000002)11148131275088344Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)11183518156835181Rat
5684998Bss101Bone structure and strength QTL 1013.6tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)11543162149361612Rat
5684999Bss102Bone structure and strength QTL 1025.50.00000072tibia strength trait (VT:1000284)tibia stiffness (CMO:0001735)11543162149361612Rat
631494Bp95Blood pressure QTL 95400.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)11620621049268520Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)11933357156983283Rat
724520Bp145Blood pressure QTL 1452.10.0024arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12078482865784828Rat
1357397Bw41Body weight QTL 414.190.0001body mass (VT:0001259)body weight (CMO:0000012)12234064749361612Rat
1357401Bw43Body weight QTL 433.75body mass (VT:0001259)body weight (CMO:0000012)12234064749361612Rat
1357400Bw62Body weight QTL624.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)12234064767340647Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)12887978078430678Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13273727390665040Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)13344984878449848Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)13344984878449848Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)13483685879836858Rat
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)13523959878430678Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)13523959878430678Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)143284731118944897Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14580314078430678Rat

Markers in Region
RH127958  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2146,662,366 - 46,662,567 (+)MAPPERmRatBN7.2
Rnor_6.0146,983,887 - 46,984,087NCBIRnor6.0
Rnor_5.0148,286,397 - 48,286,597UniSTSRnor5.0
RGSC_v3.4140,864,426 - 40,864,626UniSTSRGSC3.4
Celera142,351,748 - 42,351,948UniSTS
Cytogenetic Map1q11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 37 51 35 18 35 2 4 74 35 41 11 2
Low 6 6 6 1 6 6 7 6
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000024211   ⟹   ENSRNOP00000024211
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl146,656,859 - 46,664,939 (+)Ensembl
Rnor_6.0 Ensembl146,978,458 - 46,985,032 (+)Ensembl
RefSeq Acc Id: NM_001126088   ⟹   NP_001119560
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,062,038 - 49,068,612 (+)NCBI
mRatBN7.2146,656,938 - 46,663,512 (+)NCBI
Rnor_6.0146,978,458 - 46,985,032 (+)NCBI
Rnor_5.0148,280,850 - 48,287,542 (+)NCBI
RGSC_v3.4140,858,997 - 40,865,571 (+)RGD
Celera142,346,319 - 42,352,893 (+)RGD
Sequence:
RefSeq Acc Id: XM_006227894   ⟹   XP_006227956
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,061,904 - 49,067,804 (+)NCBI
mRatBN7.2146,656,804 - 46,662,706 (+)NCBI
Rnor_6.0146,978,345 - 46,984,226 (+)NCBI
Rnor_5.0148,280,850 - 48,287,542 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001119560 (Get FASTA)   NCBI Sequence Viewer  
  XP_006227956 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL83723 (Get FASTA)   NCBI Sequence Viewer  
  EDL83724 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000024211
  ENSRNOP00000024211.5
Reference Protein Sequences
RefSeq Acc Id: NP_001119560   ⟸   NM_001126088
- UniProtKB: D3ZEI7 (UniProtKB/TrEMBL),   A6KP01 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006227956   ⟸   XM_006227894
- Peptide Label: isoform X1
- UniProtKB: D3ZEI7 (UniProtKB/TrEMBL),   A6KP01 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000024211   ⟸   ENSRNOT00000024211

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZEI7-F1-model_v2 AlphaFold D3ZEI7 1-71 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689604
Promoter ID:EPDNEW_R129
Type:initiation region
Name:Gtf2h5_1
Description:general transcription factor IIH subunit 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0146,978,381 - 46,978,441EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560991 AgrOrtholog
BioCyc Gene G2FUF-61625 BioCyc
Ensembl Genes ENSRNOG00000018007 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000024211.6 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.1220 UniProtKB/TrEMBL
InterPro Nuc_excision_repair_TFIIH_TTDA UniProtKB/TrEMBL
  TFB5-like_sf UniProtKB/TrEMBL
KEGG Report rno:502227 UniProtKB/TrEMBL
NCBI Gene 502227 ENTREZGENE
PANTHER GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 5 UniProtKB/TrEMBL
  PTHR28580 UniProtKB/TrEMBL
Pfam Tbf5 UniProtKB/TrEMBL
PhenoGen Gtf2h5 PhenoGen
RatGTEx ENSRNOG00000018007 RatGTEx
SMART Tbf5 UniProtKB/TrEMBL
Superfamily-SCOP SSF142897 UniProtKB/TrEMBL
UniProt A6KP01 ENTREZGENE, UniProtKB/TrEMBL
  D3ZEI7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-19 Gtf2h5  general transcription factor IIH subunit 5  Gtf2h5  general transcription factor IIH, polypeptide 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-28 Gtf2h5  general transcription factor IIH, polypeptide 5  RGD1560991_predicted  similar to general transcription factor IIH, polypeptide 5 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1560991_predicted  similar to general transcription factor IIH, polypeptide 5 (predicted)  LOC502227  similar to general transcription factor IIH, polypeptide 5  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC502227  similar to general transcription factor IIH, polypeptide 5      Symbol and Name status set to provisional 70820 PROVISIONAL