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Gene: Rimklb (ribosomal modification protein rimK-like family member B) Rattus norvegicus

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Symbol:

Rimklb

Name:

ribosomal modification protein rimK-like family member B

RGD ID:

1560851

Description:

Predicted to enable N-acetyl-L-aspartate-L-glutamate ligase activity and citrate-L-glutamate ligase activity. Predicted to be active in cytoplasm. Orthologous to human RIMKLB (ribosomal modification protein rimK like family member B); INTERACTS WITH 6-propyl-2-thiouracil; alpha-Zearalanol; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

beta-citrylglutamate synthase B; Fam80b; family with sequence similarity 80, member B; LOC103692220; LOC362428; N-acetylaspartyl-glutamate synthetase; Naags; RGD1560851; ribosomal protein S6 modification-like protein B; similar to mKIAA1238 protein; uncharacterized LOC103692220

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	157,336,950 - 157,396,970 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	157,344,414 - 157,378,727 (-)	Ensembl				GRCr8
mRatBN7.2	4	155,664,392 - 155,706,888 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	155,664,375 - 155,706,711 (-)	Ensembl				mRatBN7.2
Rnor_6.0	4	155,258,241 - 155,292,809 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	155,260,103 - 155,275,161 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	222,283,614 - 222,318,109 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	158,904,485 - 158,950,642 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	144,485,390 - 144,527,333 (-)	NCBI		Celera
Cytogenetic Map	4	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

2-hydroxypropanoic acid (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acetochlor (ISO)

acrolein (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

alpha-Zearalanol (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (ISO)

CGP 52608 (ISO)

chlordecone (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

crocidolite asbestos (ISO)

cylindrospermopsin (ISO)

Dibutyl phosphate (ISO)

dorsomorphin (ISO)

folic acid (ISO)

formaldehyde (ISO)

gentamycin (EXP)

lipopolysaccharide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methapyrilene (ISO)

methylmercury chloride (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorooctanoic acid (EXP)

rac-lactic acid (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

succimer (ISO)

sunitinib (ISO)

thapsigargin (ISO)

tributylstannane (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

urethane (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytoplasm (IBA,IEA,ISO)

Molecular Function

ATP binding (IEA)

citrate-L-glutamate ligase activity (ISO)

ligase activity (IEA)

metal ion binding (IEA)

N-acetyl-L-aspartate-L-glutamate ligase activity (IBA,IEA,ISO)

nucleotide binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:20643647

Genomics

Comparative Map Data

Rimklb
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	157,336,950 - 157,396,970 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	157,344,414 - 157,378,727 (-)	Ensembl				GRCr8
mRatBN7.2	4	155,664,392 - 155,706,888 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	155,664,375 - 155,706,711 (-)	Ensembl				mRatBN7.2
Rnor_6.0	4	155,258,241 - 155,292,809 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	155,260,103 - 155,275,161 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	222,283,614 - 222,318,109 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	158,904,485 - 158,950,642 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	144,485,390 - 144,527,333 (-)	NCBI		Celera
Cytogenetic Map	4	q42	NCBI

RIMKLB
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	8,668,638 - 8,783,091 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	8,681,483 - 8,783,095 (+)	Ensembl			hg38	GRCh38
GRCh37	12	8,834,196 - 8,935,687 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	8,741,785 - 8,821,054 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	12	10,388,117 - 10,467,384 (+)	NCBI		Celera
Cytogenetic Map	12	p13.31	NCBI
HuRef	12	8,632,397 - 8,711,651 (+)	NCBI		HuRef
CHM1_1	12	8,819,474 - 8,898,746 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	8,647,354 - 8,766,437 (+)	NCBI		T2T-CHM13v2.0

Rimklb
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	122,424,255 - 122,464,021 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	122,424,255 - 122,475,720 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	6	122,447,296 - 122,487,062 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	122,447,296 - 122,498,761 (-)	Ensembl			mm10	GRCm38
MGSCv37	6	122,403,627 - 122,436,323 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	6	122,419,882 - 122,461,454 (-)	NCBI		MGSCv36	mm8
Celera	6	124,249,271 - 124,268,350 (-)	NCBI		Celera
Cytogenetic Map	6	F1	NCBI
cM Map	6	57.55	NCBI

Rimklb
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	6,306,414 - 6,346,278 (-)	Ensembl
ChiLan1.0	NW_004955413	6,298,833 - 6,362,812 (-)	NCBI	ChiLan1.0	ChiLan1.0

RIMKLB
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	14,207,022 - 14,310,950 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	14,182,783 - 14,310,422 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	8,752,509 - 8,869,226 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	8,980,325 - 9,083,140 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	8,999,423 - 9,077,179 (+)	Ensembl			panPan2	panpan1.1

RIMKLB
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	36,924,323 - 37,092,351 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	36,931,987 - 36,993,355 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	9,521,882 - 9,691,711 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	37,284,276 - 37,342,572 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	37,274,242 - 37,342,643 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	37,154,586 - 37,324,605 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	37,189,538 - 37,359,893 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	9,008,449 - 9,179,531 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Rimklb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	98,595,524 - 98,678,455 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936870	93,012 - 164,930 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936870	93,084 - 175,154 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RIMKLB
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	62,676,225 - 62,715,067 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	5	62,676,220 - 62,715,273 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	65,508,345 - 65,623,232 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RIMKLB
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	8,521,612 - 8,608,928 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	8,524,187 - 8,602,622 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666089	592,545 - 696,961 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rimklb
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624860	4,811,449 - 4,844,431 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624860	4,811,449 - 4,861,470 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Rimklb
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	6	24,615,644 - 24,649,051 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Rimklb
601 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	95
Count of miRNA genes:	70
Interacting mature miRNAs:	73
Transcripts:	ENSRNOT00000020866, ENSRNOT00000032690, ENSRNOT00000055433
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
6478754	Anxrr43	Anxiety related response QTL 43		0.14035	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	146370897	184426481	Rat
724558	Plsm2	Polydactyly-luxate syndrome (PLS) morphotypes QTL 2		0.0003	hindlimb integrity trait (VT:0010563)	hind foot phalanges count (CMO:0001949)	4	134095016	179095016	Rat
1582237	Kidm34	Kidney mass QTL 34	4	0.0001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	4	149763204	169799698	Rat
61446	Coreg2	Compensatory renal growth QTL 2	3.5		kidney mass (VT:0002707)	compensatory renal growth score (CMO:0001894)	4	150095743	159267220	Rat
6478693	Anxrr32	Anxiety related response QTL 32		0.00092	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	146370897	184426481	Rat
6478757	Anxrr44	Anxiety related response QTL 44		0.01087	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
1358364	Sradr4	Stress Responsive Adrenal Weight QTL 4	4.92		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	4	131384565	176384565	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	27730518	170099664	Rat
6478763	Anxrr46	Anxiety related response QTL 46		0.07428	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	112427331	157427331	Rat
6478760	Anxrr45	Anxiety related response QTL 45		0.06717	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	112427331	157427331	Rat
61451	Ciaa4	CIA Autoantibody QTL 4	3.1		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	4	123870974	168870974	Rat
1331802	Srn5	Serum renin concentration QTL 5	3.045		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	4	117559384	162559384	Rat
1331738	Bp209	Blood pressure QTL 209	2.979		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	140059299	181024663	Rat
6478700	Anxrr33	Anxiety related response QTL 33		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
1298524	Oia8	Oil induced arthritis QTL 8			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	140059299	184426481	Rat
10053718	Scort25	Serum corticosterone level QTL 25	2.15	0.0097	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	157292416	184426481	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	60916264	184426481	Rat
634335	Anxrr16	Anxiety related response QTL 16	7.22		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	94638356	168870820	Rat
737821	Hcar9	Hepatocarcinoma resistance QTL 9	3.7		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	106848959	168870974	Rat
7411558	Bw133	Body weight QTL 133	13.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	127263297	172263297	Rat
6478778	Anxrr51	Anxiety related response QTL 51		0.25384	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	126334185	171334185	Rat
10401796	Kidm48	Kidney mass QTL 48			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	147299608	184426481	Rat
6478718	Anxrr34	Anxiety related response QTL 34		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
6478782	Anxrr52	Anxiety related response QTL 52		0.02091	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
631511	Pia7	Pristane induced arthritis QTL 7	4.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	123870974	168870974	Rat
634347	Hcar8	Hepatocarcinoma resistance QTL 8	5.8		liver integrity trait (VT:0010547)	liver tumorous lesion area to total liver area ratio (CMO:0001075)	4	124700988	169700988	Rat
6478720	Alc23	Alcohol consumption QTL 23		0.00509	drinking behavior trait (VT:0001422)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	155834926	184426481	Rat
6478785	Anxrr53	Anxiety related response QTL 53		0.01397	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	174095838	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	100752691	179366077	Rat
1581566	Eae21	Experimental allergic encephalomyelitis QTL 21	6.2		body mass (VT:0001259)	maximum body weight loss to initial body weight ratio (CMO:0001400)	4	137447185	182447185	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	45429709	157555683	Rat
1578674	Bmd12	Bone mineral density QTL 12	3.8		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	4	137430611	182430611	Rat
6478728	Anxrr36	Anxiety related response QTL 36		0.01061	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	184426481	Rat
1358202	Gluco11	Glucose level QTL 11	2.4	0.02	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	86709649	168870974	Rat
61422	Cia13	Collagen induced arthritis QTL 13	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	134199006	168870974	Rat
634342	Cia24	Collagen induced arthritis QTL 24	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	148121375	176967367	Rat
6478733	Anxrr37	Anxiety related response QTL 37		0.00095	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
737978	Pia23	Pristane induced arthritis QTL 23	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	123870974	168870974	Rat
61362	Oia2	Oil induced arthritis QTL 2		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	140059299	184426481	Rat
631674	Iddm14	Insulin dependent diabetes mellitus QTL 14			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	65495851	159259805	Rat
6478737	Anxrr38	Anxiety related response QTL 38		0.00159	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
12798519	Anxrr54	Anxiety related response QTL 54	2.54	0.05	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	116184844	161184844	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	12212457	182430611	Rat
6478748	Anxrr42	Anxiety related response QTL 42		0.28008	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
12798525	Anxrr57	Anxiety related response QTL 57	3.21	0.05	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	148834094	168870974	Rat

Markers in Region

AI325948

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	155,673,580 - 155,673,688 (+)	MAPPER	mRatBN7.2
mRatBN7.2	4	182,555,768 - 182,555,875 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	184,095,067 - 184,095,173	NCBI	Rnor6.0
Rnor_6.0	4	155,259,520 - 155,259,627	NCBI	Rnor6.0
Rnor_5.0	4	248,213,457 - 248,213,563	UniSTS	Rnor5.0
Rnor_5.0	4	222,284,826 - 222,284,933	UniSTS	Rnor5.0
RGSC_v3.4	4	158,904,807 - 158,904,914	UniSTS	RGSC3.4
RGSC_v3.4	4	186,999,003 - 186,999,109	UniSTS	RGSC3.4
Celera	4	171,022,176 - 171,022,282	UniSTS
Celera	4	144,494,579 - 144,494,686	UniSTS
Cytogenetic Map	4	q44	UniSTS
Cytogenetic Map	4	q42	UniSTS

RH129465

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	155,673,629 - 155,673,810 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	155,259,569 - 155,259,749	NCBI	Rnor6.0
Rnor_5.0	4	222,284,875 - 222,285,055	UniSTS	Rnor5.0
RGSC_v3.4	4	158,904,856 - 158,905,036	UniSTS	RGSC3.4
Celera	4	144,494,628 - 144,494,808	UniSTS
Cytogenetic Map	4	q42	UniSTS

UniSTS:225109

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	182,555,766 - 182,555,875 (+)	MAPPER	mRatBN7.2
mRatBN7.2	4	155,673,578 - 155,673,688 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	155,259,518 - 155,259,627	NCBI	Rnor6.0
Rnor_6.0	4	184,095,065 - 184,095,173	NCBI	Rnor6.0
Rnor_5.0	4	248,213,455 - 248,213,563	UniSTS	Rnor5.0
Rnor_5.0	4	222,284,824 - 222,284,933	UniSTS	Rnor5.0
RGSC_v3.4	4	158,904,805 - 158,904,914	UniSTS	RGSC3.4
RGSC_v3.4	4	186,999,001 - 186,999,109	UniSTS	RGSC3.4
Celera	4	171,022,174 - 171,022,282	UniSTS
Celera	4	144,494,577 - 144,494,686	UniSTS
Cytogenetic Map	4	q44	UniSTS
Cytogenetic Map	4	q42	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	10	66	164	82	81	50	37	50	6	289	134	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001427856	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_001060530	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006225038	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237315	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237316	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237317	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286336	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286337	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286338	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286339	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286340	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286341	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286342	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286343	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286344	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286345	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286346	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286347	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286348	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286349	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_342749	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000032690 ⟹ ENSRNOP00000028923

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	4	155,260,103 - 155,275,161 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000104857 ⟹ ENSRNOP00000090575

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	157,344,414 - 157,356,253 (-)	Ensembl
mRatBN7.2 Ensembl	4	155,664,375 - 155,684,210 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115622 ⟹ ENSRNOP00000085776

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	157,344,414 - 157,378,727 (-)	Ensembl
mRatBN7.2 Ensembl	4	155,664,449 - 155,706,711 (-)	Ensembl

RefSeq Acc Id:

NM_001427856 ⟹ NP_001414785

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	157,344,414 - 157,378,727 (-)	NCBI

RefSeq Acc Id:

XM_006237315 ⟹ XP_006237377

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	157,336,950 - 157,378,220 (-)	NCBI
mRatBN7.2	4	155,664,905 - 155,704,280 (-)	NCBI
Rnor_6.0	4	155,258,241 - 155,292,120 (-)	NCBI
Rnor_5.0	4	222,283,614 - 222,318,109 (-)	NCBI

Sequence:

show sequence

CTGGGAACGCTGCTTAGAGTAAAACCTGCGGGCTGCTCGACTGTCCTCAGGGGTGTGGTTGTCG
CCACTGTCCTTGTTTCCTCTGAAGAATTTGATGTGACCGAGGCTGGAGGATGATGTGAGCCTCA
CCCAGAGGTTACTACGTGCCTCCCAAGGAGTAAAACTTAGAGTAGCGATCGGCTATTTAAATTT
TTTTCTTTAACAACCTTTGGAACAAGAAGGAAGGAGGTCACCAAATAATTGAATGTTTGACTAA
AGTAGACCCCCCCCCCACATCCAGATAGAGAACAACTTCAGTCCTATTAATTTAATGTTTCTCA
TCCCAGGTTTGTAATCCCTGTACTCTGTAAGGGATTGTATTCATGAATAGAGAGTGTTAATCAA
TGAGGTTTTTATACTAACCAAGCTGTGTGTACCTTGAATGTAAATTCTTTCAATGTTACTTTAT
TTTCCCAACAATTAACTACAGTTTTCCCAATGTCTCTGAAGTTGGGTTAAGTTTCAAATCTACG
TGGAAAGTATCAGTTGAGTATGGAGGGTTTTTTGTTTTGTTTTCTTTGTGGACATTTTAAATCG
TTAATGGTATCCATGTCCATGCAGATTTAAATGCCATTTAAGTCTCTTCTTCATAATGGGTACT
TTGGTGGTTATTTCTGTTTTAAAACAGCTGACAATATATTTTTTTAAGCTACTTGGAAGAAAAC
AAGGAAATTTCAGTCATGGAGATTGGAGTTGTAACCCAAACCATTGTTGGTCTTTCCTTGTGTC
ATTGCTTCTTAGTGTTAGTTTGGCAAACTTTCCATCTCGTTTTTCCTTCTGTTTGCTGGAAGTC
CCTTTAGGTACTGGAGTCCAAGTGTTGGGGAGTCCATGTATTGGGGAGTCCATGTGTTTGTCTG
AGTCTGACAAAACAGCTAGGAGGTGAAGAGCTAGTCCTCTACCCAGTCAAGAGCCATTGCCTTG
GTCCCCTTTCTTACCACATCGCCTAAGGAGCATGGTGCCCAACCTAAATTTAGCCTGTTGCCCA
TTGACCACCAGCTACCGTCTGGGTTCTGTTAGTTTATACTGGACAGTTTTATGGGAACATTTTT
TTTTTTTTTTAGTCCCTATTGGATACTTCAGTGGTTGCATGGGGGTTAGAATGACAATACAAAG
TTATCTCCCCCTTCCCCCATCGAGGCAGGCCCTGAACGTTGAGGCAGGGACTGAGGGCAAGGAA
CAGGTTCTTCACTCAGAGAAGCAGGAGTAGCTTTACTCCAGGCATAGCCTTGTTAACTGAGAGA
TAAGTGGGTGGAGGAAAAAATAATGACTATGTGACAAGGGAGAAAAAGCAAACATAAAGAGGAT
GGGTTTATTGTAAGTCTCTATGAGCACCTTCTCCTTAATAATGGATTCCTAGGGAGACTTATGG
CAGGTAAATTCACCATATTCTGTAATCCAAGAAGTTAGTCATGTTTTTTAAACCGTGAGGGAGA
AAATGTTAGCTGCGCTATCATGCACAGTACAGCTGTGTTCCAAGAGAAGCTGAGTAAGGTTAAG
TACTGATTTAGAGAAACTGTCTTCACTTACTTGGAATCTTCTTGATTGTCATATTAAGAATATT
GAGAAATAATATGGAACCTCCGAAAATATCTATACTTATGTATTTTAGATCCATGTGCTATATG
TATATGTATTGTGCAGTTTAGATTTGGAGAAAGGACTTTCATAGTGACATAGAAATGCCAGGCT
GTTTTTTAGTGTTTTCCAGTATTTTCCTCGTCTCCAGATTGCCTTAGACACAAAAGCTACAGTC
TCATTACCCCTACTCCTTCTGAGGCTGGAGTGTGTGGGAACCTCCATGTGTCCCCTCCCTTTTA
CTAAAGTTCTGTTTTTGTTCTTCCAATTTTAACTGTTAAAACTATTTCAGGATCAGAGAGGTGA
TAATTGATAGTGACATCAGGCTGACACTAGACAACCCTGGCTTCAAACTCACTAAGTGGACCAG
GCTGCACTTGAATTCTGCCTGGAATAAAAAAAAAAGTGTGTCGCCAGCTGCTCTCTCCACCCTC
CCAGTGCCAAAGCTGGGAGCTCTGTGTGTGTTATTCAGACTATCACTGCCATTCCCCTTCATTA
AGAAAAATTGGAAAAATAAGGAATGAACACTCGCAGTATATAACTACCTTTTTTTGTTGAGATA
AAAGTTTGCATCAGCTAGTCCTTGGAAGGAAGAACAAGCAGACCGAGATGTGTAGCTCCGTGTC
TGGTAAGCTGTGGTTCTTGACAGATCGTCGCATCCAAGAAGACTACCCACAGAAAGAGATCCTA
AGAGCTCTGAAGGCCAAATGCTGTGAAGAGGAATTGGACTTTAGGGCTGTAGTGATGGACGAGG
TGGTGCTGACAGTCGAGCAAGGAAATCTGGGTCTGCGGATCAATGGAGAGCTGATCTCTGCCTA
CCCACAGGTGGTGGTAGTGAGAGTTCCAACCCCATGGGTGCAGAGCGACAGTGATATCACTGTT
TTGCGCCACCTAGAGAAAATGGGGTGCCGGCTGATGAACCGGCCTCAAGCCATCCTGAACTGTG
TTAATAAATTCTGGACGTTTCAAGAGCTGGCTGGGCACGGTGTGCCTCTACCAGATACTTTTTC
TTACGGTGGCCATGAAAACTTTTCTAAAATGATTGATGAAGCGGAAGTCCTGGAGTTCCCAATG
GTGGTGAAGAATACACGGGGTCATAGAGGCAAAGCTGTTTTCTTGGCACGAGATAAACACCATT
TAGCTGATCTAAGCCATCTTATTCGGCACGAAGCTCCATATTTGTTCCAGAAATATATCAAAGA
GTCTCATGGAAGGGATGTGAGAGTCATTGTTGTGGGAGGCCGTGTAGTTGGCACCATGCTACGC
TGTTCGACAGATGGAAGGATGCAAAGCAACTGTTCCCTAGGTGGTGTGGGGATGATGTGCTCAT
TGAGTGAACAAGGGAAGCAGCTAGCTATCCAGGTGTCTAATATCCTGGGGATGGATGTGTGTGG
CATTGACCTGTTGATGAAAGATGACGGCTCCTTCTGTGTCTGCGAGGCCAATGCAAATGTAGGT
TTCATCGCCTTTGATAAGGCTTGTAATCTAGATGTAGCTGGTATCATAGCAGACTATGCTGCCT
CCCTTCTGCCCGCTGGGCGGCTCACCCGGCGCATGTCCCTGCTCTCTGTGGTGTCCACTGCCAG
TGAGACCAGTGAGCCGGAGCTCGGTCCCCCTGCCAGCGCTGCTGTCGACAACATGAGCGCCAGT
TCCAGCTCTGTTGATAGCGACCCTGAAAGCACCACCGAGCGAGAGCTGCTCACCAAGCTCCCAG
GGGGGCTGTTCAACATGAACCAGCTGCTAGCCAATGAAATCAAACTCCTGGTGGAGTGACTCCA
CTGGTAAATAGTTAAACAACAAAACCCTTGTAAAACTGTCTCCCTGCACCCCATCCCCTTCCCC
TTAACCAACTTGCAATGCTGTTCATGGAGAATGTTCAGAAGGTTGAGATAAAGGTAAAGTAAGA
TTGATTAGATGAAGGGAAAATAGATGAGACCCCTTAGTGTAATACTTAACTGATTCATTTACAG
ATCTCACAGAGAGGAATACGAAGTGACACACAGAGAAATGGCAGGCTCTCATGTTAACCTTTTC
AGTTACTAAAAGCCTGCTTAAGGCCATGAGGAACATGAGAAGTTTTTTTCCCTCTCCTCATGGT
TTCTTGCTTTTGTCTTTATGTAGAGTGGTTTCGATTCAAGAACTTGGTAGCATGACTTCAGTTT
CAAGATTTGTATAGAGAAAAACATCCACTTAAAATCCAGAAATGTTTTAAATAATAATCTGAAA
ATTCTGCCCGTTTCTCTCAGCTAGCATTTAGCACATAGTTTATGAACTCTAAGGGGCTCTGACT
GGAATTTATATTCATGTTTGTCTTTGTTTTTTTTTCCCCTTAATTTGGGTGGGAGGGTAATGTG
ACTATAACCCAATAAAGATTTTTAATAACAAAATTGGCATGTTTGCATGATGAAAGGGAAATGA
ACAGTATTGCAATGTTTGGTATACAAAGTAGCATTTACTCAGTGTAGATGGTTACACTAGTTGA
AGTTTGTGCATTGACTTGTATTTGCTAGTGATTTAGTCTTTCTCAAAGGATACATGCTCTGTTA
CTGTTACATTGTTAACACATGCTGGTAACACCCTTGCTCTATGACTGCATCTTTAACAATGGCC
AAAGTAAACAATGCTACTTTTCTGGTTAACAAGACACCACTCAAAACATACATTTAAAAGTCTC
CCTGCCTTCCCTTTTTTCTGTTTGGATGAGTTAAACATTTAAGGATATAAAAGACATTTCTGGA
AGGCAAGTCAAGATATTAGGTATAAAGCTGAAAGGATTTCTTAATGCTAACTTTTTATGTTTGC
AGTTTTCACATTTTAGAAAGAAGTATATATGTTGCATGCAAGTGTACATGTTTTATTCTTTGTT
TACACCAAACAGAATAGATTCTAGAGAATGGCATGATGGGAAACAGTTTTTTACTTAAAACAAA
ACAGATGAATTGCCTTAGACCTCGATAGTATAAGATACTCCCCGAAAGACAATAGGAAAGTAGA
TGTTTCTTAGGCTTTTCTGTGTGTATGAATGTTGTTTGTTTTTGTAGACTGTTTGGTGTATGAT
TTATTCAAGGCTACATGCTTTTATTTAATGTCATGGCTGTGCATTTTGTTTTTTATGCTTAAGA
TCTGGAGGGAGGTGGGCTGGTTGTTTTGGGGGGGGGTTATTTAAATATTGAGTCTCATAGCCCT
ACTCCTAAGCCTTCGGTACTGACCACTCTGTTCCTTTTTTGAATTGATGAAAACCCCAAACTGC
ATATAATATGAGCCTTTAACACGAGGAGTAAAATCTAGTCGTGAGTCTGGAAGATGTGTTAAGA
AGTGGAGATGCTTCAGGGGTCAACATAATTCCCCAAGCTTTTCTTGCTTCTCCAGTGCTGTTTT
TCTTCAGATGGACCTTAACATAATTTCTCGGACACTACTTAGAGACTTGAAGGCGATAATAAGA
CATCAGTATCATCCAGCTCAACAGAGGTTTGATCATGGTTAACTGTGTAGTTCTCTCATTTTAA
AAAGGAATGTAATAAAACTTGGTTTTCCCCATAGAATTAAATAATATTGAAACGGAGTGAAAGG
TTTTATTGACAAATAGAATAGTACCTAATCTGTGCACTCTCATTTCACCTCAGAAAAAA

hide sequence

RefSeq Acc Id:

XM_006237316 ⟹ XP_006237378

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	157,336,950 - 157,378,924 (-)	NCBI
mRatBN7.2	4	155,664,905 - 155,706,888 (-)	NCBI
Rnor_6.0	4	155,258,241 - 155,292,808 (-)	NCBI
Rnor_5.0	4	222,283,614 - 222,318,109 (-)	NCBI

Sequence:

show sequence

CCTCGGCTCGGGCGGGGGGCGCGCGGCGCCTCGGTCTGGGGGACGCGGGGCGGCCTCGCCGGCG
TCGTGCGCTGTGTGTGTGGTGTGAGCGGGATCGCGCGCGCGCGCGGTCGGGCGACAGATAAAAG
TTTGCATCAGCTAGTCCTTGGAAGGAAGAACAAGCAGACCGAGATGTGTAGCTCCGTGTCTGGT
AAGCTGTGGTTCTTGACAGATCGTCGCATCCAAGAAGACTACCCACAGAAAGAGATCCTAAGAG
CTCTGAAGGCCAAATGCTGTGAAGAGGAATTGGACTTTAGGGCTGTAGTGATGGACGAGGTGGT
GCTGACAGTCGAGCAAGGAAATCTGGGTCTGCGGATCAATGGAGAGCTGATCTCTGCCTACCCA
CAGGTGGTGGTAGTGAGAGTTCCAACCCCATGGGTGCAGAGCGACAGTGATATCACTGTTTTGC
GCCACCTAGAGAAAATGGGGTGCCGGCTGATGAACCGGCCTCAAGCCATCCTGAACTGTGTTAA
TAAATTCTGGACGTTTCAAGAGCTGGCTGGGCACGGTGTGCCTCTACCAGATACTTTTTCTTAC
GGTGGCCATGAAAACTTTTCTAAAATGATTGATGAAGCGGAAGTCCTGGAGTTCCCAATGGTGG
TGAAGAATACACGGGGTCATAGAGGCAAAGCTGTTTTCTTGGCACGAGATAAACACCATTTAGC
TGATCTAAGCCATCTTATTCGGCACGAAGCTCCATATTTGTTCCAGAAATATATCAAAGAGTCT
CATGGAAGGGATGTGAGAGTCATTGTTGTGGGAGGCCGTGTAGTTGGCACCATGCTACGCTGTT
CGACAGATGGAAGGATGCAAAGCAACTGTTCCCTAGGTGGTGTGGGGATGATGTGCTCATTGAG
TGAACAAGGGAAGCAGCTAGCTATCCAGGTGTCTAATATCCTGGGGATGGATGTGTGTGGCATT
GACCTGTTGATGAAAGATGACGGCTCCTTCTGTGTCTGCGAGGCCAATGCAAATGTAGGTTTCA
TCGCCTTTGATAAGGCTTGTAATCTAGATGTAGCTGGTATCATAGCAGACTATGCTGCCTCCCT
TCTGCCCGCTGGGCGGCTCACCCGGCGCATGTCCCTGCTCTCTGTGGTGTCCACTGCCAGTGAG
ACCAGTGAGCCGGAGCTCGGTCCCCCTGCCAGCGCTGCTGTCGACAACATGAGCGCCAGTTCCA
GCTCTGTTGATAGCGACCCTGAAAGCACCACCGAGCGAGAGCTGCTCACCAAGCTCCCAGGGGG
GCTGTTCAACATGAACCAGCTGCTAGCCAATGAAATCAAACTCCTGGTGGAGTGACTCCACTGG
TAAATAGTTAAACAACAAAACCCTTGTAAAACTGTCTCCCTGCACCCCATCCCCTTCCCCTTAA
CCAACTTGCAATGCTGTTCATGGAGAATGTTCAGAAGGTTGAGATAAAGGTAAAGTAAGATTGA
TTAGATGAAGGGAAAATAGATGAGACCCCTTAGTGTAATACTTAACTGATTCATTTACAGATCT
CACAGAGAGGAATACGAAGTGACACACAGAGAAATGGCAGGCTCTCATGTTAACCTTTTCAGTT
ACTAAAAGCCTGCTTAAGGCCATGAGGAACATGAGAAGTTTTTTTCCCTCTCCTCATGGTTTCT
TGCTTTTGTCTTTATGTAGAGTGGTTTCGATTCAAGAACTTGGTAGCATGACTTCAGTTTCAAG
ATTTGTATAGAGAAAAACATCCACTTAAAATCCAGAAATGTTTTAAATAATAATCTGAAAATTC
TGCCCGTTTCTCTCAGCTAGCATTTAGCACATAGTTTATGAACTCTAAGGGGCTCTGACTGGAA
TTTATATTCATGTTTGTCTTTGTTTTTTTTTCCCCTTAATTTGGGTGGGAGGGTAATGTGACTA
TAACCCAATAAAGATTTTTAATAACAAAATTGGCATGTTTGCATGATGAAAGGGAAATGAACAG
TATTGCAATGTTTGGTATACAAAGTAGCATTTACTCAGTGTAGATGGTTACACTAGTTGAAGTT
TGTGCATTGACTTGTATTTGCTAGTGATTTAGTCTTTCTCAAAGGATACATGCTCTGTTACTGT
TACATTGTTAACACATGCTGGTAACACCCTTGCTCTATGACTGCATCTTTAACAATGGCCAAAG
TAAACAATGCTACTTTTCTGGTTAACAAGACACCACTCAAAACATACATTTAAAAGTCTCCCTG
CCTTCCCTTTTTTCTGTTTGGATGAGTTAAACATTTAAGGATATAAAAGACATTTCTGGAAGGC
AAGTCAAGATATTAGGTATAAAGCTGAAAGGATTTCTTAATGCTAACTTTTTATGTTTGCAGTT
TTCACATTTTAGAAAGAAGTATATATGTTGCATGCAAGTGTACATGTTTTATTCTTTGTTTACA
CCAAACAGAATAGATTCTAGAGAATGGCATGATGGGAAACAGTTTTTTACTTAAAACAAAACAG
ATGAATTGCCTTAGACCTCGATAGTATAAGATACTCCCCGAAAGACAATAGGAAAGTAGATGTT
TCTTAGGCTTTTCTGTGTGTATGAATGTTGTTTGTTTTTGTAGACTGTTTGGTGTATGATTTAT
TCAAGGCTACATGCTTTTATTTAATGTCATGGCTGTGCATTTTGTTTTTTATGCTTAAGATCTG
GAGGGAGGTGGGCTGGTTGTTTTGGGGGGGGGTTATTTAAATATTGAGTCTCATAGCCCTACTC
CTAAGCCTTCGGTACTGACCACTCTGTTCCTTTTTTGAATTGATGAAAACCCCAAACTGCATAT
AATATGAGCCTTTAACACGAGGAGTAAAATCTAGTCGTGAGTCTGGAAGATGTGTTAAGAAGTG
GAGATGCTTCAGGGGTCAACATAATTCCCCAAGCTTTTCTTGCTTCTCCAGTGCTGTTTTTCTT
CAGATGGACCTTAACATAATTTCTCGGACACTACTTAGAGACTTGAAGGCGATAATAAGACATC
AGTATCATCCAGCTCAACAGAGGTTTGATCATGGTTAACTGTGTAGTTCTCTCATTTTAAAAAG
GAATGTAATAAAACTTGGTTTTCCCCATAGAATTAAATAATATTGAAACGGAGTGAAAGGTTTT
ATTGACAAATAGAATAGTACCTAATCTGTGCACTCTCATTTCACCTCAGAAAAAA

hide sequence

RefSeq Acc Id:

XM_006237317 ⟹ XP_006237379

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	157,336,950 - 157,378,891 (-)	NCBI
mRatBN7.2	4	155,664,905 - 155,706,857 (-)	NCBI
Rnor_6.0	4	155,258,241 - 155,292,809 (-)	NCBI
Rnor_5.0	4	222,283,614 - 222,318,109 (-)	NCBI

Sequence:

show sequence

TCCTCGGCTCGGGCGGGGGGCGCGCGGCGCCTCGGTCTGGGGGACGCGGGGCGGCCTCGCCGGC
GTCGTGCGCTGTGTGTGTGGTGTGAGCGGGATCGCGCGCGCGCGCGGTCGGGCGACAGGCGAGT
GAGGGAGCGAGCGGCGGCCGGGCGTGAGCGAATAAAAGTTTGCATCAGCTAGTCCTTGGAAGGA
AGAACAAGCAGACCGAGATGTGTAGCTCCGTGTCTGGTAAGCTGTGGTTCTTGACAGATCGTCG
CATCCAAGAAGACTACCCACAGAAAGAGATCCTAAGAGCTCTGAAGGCCAAATGCTGTGAAGAG
GAATTGGACTTTAGGGCTGTAGTGATGGACGAGGTGGTGCTGACAGTCGAGCAAGGAAATCTGG
GTCTGCGGATCAATGGAGAGCTGATCTCTGCCTACCCACAGGTGGTGGTAGTGAGAGTTCCAAC
CCCATGGGTGCAGAGCGACAGTGATATCACTGTTTTGCGCCACCTAGAGAAAATGGGGTGCCGG
CTGATGAACCGGCCTCAAGCCATCCTGAACTGTGTTAATAAATTCTGGACGTTTCAAGAGCTGG
CTGGGCACGGTGTGCCTCTACCAGATACTTTTTCTTACGGTGGCCATGAAAACTTTTCTAAAAT
GATTGATGAAGCGGAAGTCCTGGAGTTCCCAATGGTGGTGAAGAATACACGGGGTCATAGAGGC
AAAGCTGTTTTCTTGGCACGAGATAAACACCATTTAGCTGATCTAAGCCATCTTATTCGGCACG
AAGCTCCATATTTGTTCCAGAAATATATCAAAGAGTCTCATGGAAGGGATGTGAGAGTCATTGT
TGTGGGAGGCCGTGTAGTTGGCACCATGCTACGCTGTTCGACAGATGGAAGGATGCAAAGCAAC
TGTTCCCTAGGTGGTGTGGGGATGATGTGCTCATTGAGTGAACAAGGGAAGCAGCTAGCTATCC
AGGTGTCTAATATCCTGGGGATGGATGTGTGTGGCATTGACCTGTTGATGAAAGATGACGGCTC
CTTCTGTGTCTGCGAGGCCAATGCAAATGTAGGTTTCATCGCCTTTGATAAGGCTTGTAATCTA
GATGTAGCTGGTATCATAGCAGACTATGCTGCCTCCCTTCTGCCCGCTGGGCGGCTCACCCGGC
GCATGTCCCTGCTCTCTGTGGTGTCCACTGCCAGTGAGACCAGTGAGCCGGAGCTCGGTCCCCC
TGCCAGCGCTGCTGTCGACAACATGAGCGCCAGTTCCAGCTCTGTTGATAGCGACCCTGAAAGC
ACCACCGAGCGAGAGCTGCTCACCAAGCTCCCAGGGGGGCTGTTCAACATGAACCAGCTGCTAG
CCAATGAAATCAAACTCCTGGTGGAGTGACTCCACTGGTAAATAGTTAAACAACAAAACCCTTG
TAAAACTGTCTCCCTGCACCCCATCCCCTTCCCCTTAACCAACTTGCAATGCTGTTCATGGAGA
ATGTTCAGAAGGTTGAGATAAAGGTAAAGTAAGATTGATTAGATGAAGGGAAAATAGATGAGAC
CCCTTAGTGTAATACTTAACTGATTCATTTACAGATCTCACAGAGAGGAATACGAAGTGACACA
CAGAGAAATGGCAGGCTCTCATGTTAACCTTTTCAGTTACTAAAAGCCTGCTTAAGGCCATGAG
GAACATGAGAAGTTTTTTTCCCTCTCCTCATGGTTTCTTGCTTTTGTCTTTATGTAGAGTGGTT
TCGATTCAAGAACTTGGTAGCATGACTTCAGTTTCAAGATTTGTATAGAGAAAAACATCCACTT
AAAATCCAGAAATGTTTTAAATAATAATCTGAAAATTCTGCCCGTTTCTCTCAGCTAGCATTTA
GCACATAGTTTATGAACTCTAAGGGGCTCTGACTGGAATTTATATTCATGTTTGTCTTTGTTTT
TTTTTCCCCTTAATTTGGGTGGGAGGGTAATGTGACTATAACCCAATAAAGATTTTTAATAACA
AAATTGGCATGTTTGCATGATGAAAGGGAAATGAACAGTATTGCAATGTTTGGTATACAAAGTA
GCATTTACTCAGTGTAGATGGTTACACTAGTTGAAGTTTGTGCATTGACTTGTATTTGCTAGTG
ATTTAGTCTTTCTCAAAGGATACATGCTCTGTTACTGTTACATTGTTAACACATGCTGGTAACA
CCCTTGCTCTATGACTGCATCTTTAACAATGGCCAAAGTAAACAATGCTACTTTTCTGGTTAAC
AAGACACCACTCAAAACATACATTTAAAAGTCTCCCTGCCTTCCCTTTTTTCTGTTTGGATGAG
TTAAACATTTAAGGATATAAAAGACATTTCTGGAAGGCAAGTCAAGATATTAGGTATAAAGCTG
AAAGGATTTCTTAATGCTAACTTTTTATGTTTGCAGTTTTCACATTTTAGAAAGAAGTATATAT
GTTGCATGCAAGTGTACATGTTTTATTCTTTGTTTACACCAAACAGAATAGATTCTAGAGAATG
GCATGATGGGAAACAGTTTTTTACTTAAAACAAAACAGATGAATTGCCTTAGACCTCGATAGTA
TAAGATACTCCCCGAAAGACAATAGGAAAGTAGATGTTTCTTAGGCTTTTCTGTGTGTATGAAT
GTTGTTTGTTTTTGTAGACTGTTTGGTGTATGATTTATTCAAGGCTACATGCTTTTATTTAATG
TCATGGCTGTGCATTTTGTTTTTTATGCTTAAGATCTGGAGGGAGGTGGGCTGGTTGTTTTGGG
GGGGGGTTATTTAAATATTGAGTCTCATAGCCCTACTCCTAAGCCTTCGGTACTGACCACTCTG
TTCCTTTTTTGAATTGATGAAAACCCCAAACTGCATATAATATGAGCCTTTAACACGAGGAGTA
AAATCTAGTCGTGAGTCTGGAAGATGTGTTAAGAAGTGGAGATGCTTCAGGGGTCAACATAATT
CCCCAAGCTTTTCTTGCTTCTCCAGTGCTGTTTTTCTTCAGATGGACCTTAACATAATTTCTCG
GACACTACTTAGAGACTTGAAGGCGATAATAAGACATCAGTATCATCCAGCTCAACAGAGGTTT
GATCATGGTTAACTGTGTAGTTCTCTCATTTTAAAAAGGAATGTAATAAAACTTGGTTTTCCCC
ATAGAATTAAATAATATTGAAACGGAGTGAAAGGTTTTATTGACAAATAGAATAGTACCTAATC
TGTGCACTCTCATTTCACCTCAGAAAAAA

hide sequence

RefSeq Acc Id:

XM_063286336 ⟹ XP_063142406

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	157,336,950 - 157,391,294 (-)	NCBI

RefSeq Acc Id:

XM_063286337 ⟹ XP_063142407

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	157,336,950 - 157,378,429 (-)	NCBI

RefSeq Acc Id:

XM_063286338 ⟹ XP_063142408

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	157,336,950 - 157,379,700 (-)	NCBI

RefSeq Acc Id:

XM_063286339 ⟹ XP_063142409

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	157,336,950 - 157,378,924 (-)	NCBI

RefSeq Acc Id:

XM_063286340 ⟹ XP_063142410

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	157,336,950 - 157,396,970 (-)	NCBI

RefSeq Acc Id:

XM_063286341 ⟹ XP_063142411

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	157,336,950 - 157,378,924 (-)	NCBI

RefSeq Acc Id:

XM_063286342 ⟹ XP_063142412

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	157,336,950 - 157,378,924 (-)	NCBI

RefSeq Acc Id:

XM_063286343 ⟹ XP_063142413

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	157,336,950 - 157,378,644 (-)	NCBI

RefSeq Acc Id:

XM_063286344 ⟹ XP_063142414

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	157,336,950 - 157,378,397 (-)	NCBI

RefSeq Acc Id:

XM_063286345 ⟹ XP_063142415

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	157,336,950 - 157,378,891 (-)	NCBI

RefSeq Acc Id:

XM_063286346 ⟹ XP_063142416

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	157,336,950 - 157,378,644 (-)	NCBI

RefSeq Acc Id:

XM_063286347 ⟹ XP_063142417

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	157,336,950 - 157,378,924 (-)	NCBI

RefSeq Acc Id:

XM_063286348 ⟹ XP_063142418

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	157,336,950 - 157,378,221 (-)	NCBI

RefSeq Acc Id:

XM_063286349 ⟹ XP_063142419

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	157,336,950 - 157,379,700 (-)	NCBI

RefSeq Acc Id:

XM_342749 ⟹ XP_342750

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	157,336,950 - 157,378,644 (-)	NCBI
mRatBN7.2	4	155,664,905 - 155,706,701 (-)	NCBI
Rnor_6.0	4	155,258,241 - 155,292,496 (-)	NCBI
Rnor_5.0	4	222,283,614 - 222,318,109 (-)	NCBI
RGSC_v3.4	4	158,904,485 - 158,950,642 (-)	RGD

Sequence:

show sequence

CCGCATCGCCCCCTCCCCCTCCTCAGCGGACTTCCCGCGGCCCGCGCTTGCTCCTAGGCGGCGG
CCGGGCCGGGCAGGCGAGGGAGGAGCCGGCGGCCAGATAAAAGTTTGCATCAGCTAGTCCTTGG
AAGGAAGAACAAGCAGACCGAGATGTGTAGCTCCGTGTCTGGTAAGCTGTGGTTCTTGACAGAT
CGTCGCATCCAAGAAGACTACCCACAGAAAGAGATCCTAAGAGCTCTGAAGGCCAAATGCTGTG
AAGAGGAATTGGACTTTAGGGCTGTAGTGATGGACGAGGTGGTGCTGACAGTCGAGCAAGGAAA
TCTGGGTCTGCGGATCAATGGAGAGCTGATCTCTGCCTACCCACAGGTGGTGGTAGTGAGAGTT
CCAACCCCATGGGTGCAGAGCGACAGTGATATCACTGTTTTGCGCCACCTAGAGAAAATGGGGT
GCCGGCTGATGAACCGGCCTCAAGCCATCCTGAACTGTGTTAATAAATTCTGGACGTTTCAAGA
GCTGGCTGGGCACGGTGTGCCTCTACCAGATACTTTTTCTTACGGTGGCCATGAAAACTTTTCT
AAAATGATTGATGAAGCGGAAGTCCTGGAGTTCCCAATGGTGGTGAAGAATACACGGGGTCATA
GAGGCAAAGCTGTTTTCTTGGCACGAGATAAACACCATTTAGCTGATCTAAGCCATCTTATTCG
GCACGAAGCTCCATATTTGTTCCAGAAATATATCAAAGAGTCTCATGGAAGGGATGTGAGAGTC
ATTGTTGTGGGAGGCCGTGTAGTTGGCACCATGCTACGCTGTTCGACAGATGGAAGGATGCAAA
GCAACTGTTCCCTAGGTGGTGTGGGGATGATGTGCTCATTGAGTGAACAAGGGAAGCAGCTAGC
TATCCAGGTGTCTAATATCCTGGGGATGGATGTGTGTGGCATTGACCTGTTGATGAAAGATGAC
GGCTCCTTCTGTGTCTGCGAGGCCAATGCAAATGTAGGTTTCATCGCCTTTGATAAGGCTTGTA
ATCTAGATGTAGCTGGTATCATAGCAGACTATGCTGCCTCCCTTCTGCCCGCTGGGCGGCTCAC
CCGGCGCATGTCCCTGCTCTCTGTGGTGTCCACTGCCAGTGAGACCAGTGAGCCGGAGCTCGGT
CCCCCTGCCAGCGCTGCTGTCGACAACATGAGCGCCAGTTCCAGCTCTGTTGATAGCGACCCTG
AAAGCACCACCGAGCGAGAGCTGCTCACCAAGCTCCCAGGGGGGCTGTTCAACATGAACCAGCT
GCTAGCCAATGAAATCAAACTCCTGGTGGAGTGACTCCACTGGTAAATAGTTAAACAACAAAAC
CCTTGTAAAACTGTCTCCCTGCACCCCATCCCCTTCCCCTTAACCAACTTGCAATGCTGTTCAT
GGAGAATGTTCAGAAGGTTGAGATAAAGGTAAAGTAAGATTGATTAGATGAAGGGAAAATAGAT
GAGACCCCTTAGTGTAATACTTAACTGATTCATTTACAGATCTCACAGAGAGGAATACGAAGTG
ACACACAGAGAAATGGCAGGCTCTCATGTTAACCTTTTCAGTTACTAAAAGCCTGCTTAAGGCC
ATGAGGAACATGAGAAGTTTTTTTCCCTCTCCTCATGGTTTCTTGCTTTTGTCTTTATGTAGAG
TGGTTTCGATTCAAGAACTTGGTAGCATGACTTCAGTTTCAAGATTTGTATAGAGAAAAACATC
CACTTAAAATCCAGAAATGTTTTAAATAATAATCTGAAAATTCTGCCCGTTTCTCTCAGCTAGC
ATTTAGCACATAGTTTATGAACTCTAAGGGGCTCTGACTGGAATTTATATTCATGTTTGTCTTT
GTTTTTTTTTCCCCTTAATTTGGGTGGGAGGGTAATGTGACTATAACCCAATAAAGATTTTTAA
TAACAAAATTGGCATGTTTGCATGATGAAAGGGAAATGAACAGTATTGCAATGTTTGGTATACA
AAGTAGCATTTACTCAGTGTAGATGGTTACACTAGTTGAAGTTTGTGCATTGACTTGTATTTGC
TAGTGATTTAGTCTTTCTCAAAGGATACATGCTCTGTTACTGTTACATTGTTAACACATGCTGG
TAACACCCTTGCTCTATGACTGCATCTTTAACAATGGCCAAAGTAAACAATGCTACTTTTCTGG
TTAACAAGACACCACTCAAAACATACATTTAAAAGTCTCCCTGCCTTCCCTTTTTTCTGTTTGG
ATGAGTTAAACATTTAAGGATATAAAAGACATTTCTGGAAGGCAAGTCAAGATATTAGGTATAA
AGCTGAAAGGATTTCTTAATGCTAACTTTTTATGTTTGCAGTTTTCACATTTTAGAAAGAAGTA
TATATGTTGCATGCAAGTGTACATGTTTTATTCTTTGTTTACACCAAACAGAATAGATTCTAGA
GAATGGCATGATGGGAAACAGTTTTTTACTTAAAACAAAACAGATGAATTGCCTTAGACCTCGA
TAGTATAAGATACTCCCCGAAAGACAATAGGAAAGTAGATGTTTCTTAGGCTTTTCTGTGTGTA
TGAATGTTGTTTGTTTTTGTAGACTGTTTGGTGTATGATTTATTCAAGGCTACATGCTTTTATT
TAATGTCATGGCTGTGCATTTTGTTTTTTATGCTTAAGATCTGGAGGGAGGTGGGCTGGTTGTT
TTGGGGGGGGGTTATTTAAATATTGAGTCTCATAGCCCTACTCCTAAGCCTTCGGTACTGACCA
CTCTGTTCCTTTTTTGAATTGATGAAAACCCCAAACTGCATATAATATGAGCCTTTAACACGAG
GAGTAAAATCTAGTCGTGAGTCTGGAAGATGTGTTAAGAAGTGGAGATGCTTCAGGGGTCAACA
TAATTCCCCAAGCTTTTCTTGCTTCTCCAGTGCTGTTTTTCTTCAGATGGACCTTAACATAATT
TCTCGGACACTACTTAGAGACTTGAAGGCGATAATAAGACATCAGTATCATCCAGCTCAACAGA
GGTTTGATCATGGTTAACTGTGTAGTTCTCTCATTTTAAAAAGGAATGTAATAAAACTTGGTTT
TCCCCATAGAATTAAATAATATTGAAACGGAGTGAAAGGTTTTATTGACAAATAGAATAGTACC
TAATCTGTGCACTCTCATTTCACCTCAGAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001414785	(Get FASTA)	NCBI Sequence Viewer
	XP_006237377	(Get FASTA)	NCBI Sequence Viewer
	XP_006237378	(Get FASTA)	NCBI Sequence Viewer
	XP_006237379	(Get FASTA)	NCBI Sequence Viewer
	XP_063142406	(Get FASTA)	NCBI Sequence Viewer
	XP_063142407	(Get FASTA)	NCBI Sequence Viewer
	XP_063142408	(Get FASTA)	NCBI Sequence Viewer
	XP_063142409	(Get FASTA)	NCBI Sequence Viewer
	XP_063142410	(Get FASTA)	NCBI Sequence Viewer
	XP_063142411	(Get FASTA)	NCBI Sequence Viewer
	XP_063142412	(Get FASTA)	NCBI Sequence Viewer
	XP_063142413	(Get FASTA)	NCBI Sequence Viewer
	XP_063142414	(Get FASTA)	NCBI Sequence Viewer
	XP_063142415	(Get FASTA)	NCBI Sequence Viewer
	XP_063142416	(Get FASTA)	NCBI Sequence Viewer
	XP_063142417	(Get FASTA)	NCBI Sequence Viewer
	XP_063142418	(Get FASTA)	NCBI Sequence Viewer
	XP_063142419	(Get FASTA)	NCBI Sequence Viewer
	XP_342750	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM01992	(Get FASTA)	NCBI Sequence Viewer
	EDM01993	(Get FASTA)	NCBI Sequence Viewer
	EDM01994	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000085776
	ENSRNOP00000085776.1
	ENSRNOP00000090575.1

RefSeq Acc Id:	XP_342750 ⟸ XM_342749
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A4B6 (UniProtKB/TrEMBL), A0A8I6A9U5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MCSSVSGKLWFLTDRRIQEDYPQKEILRALKAKCCEEELDFRAVVMDEVVLTVEQGNLGLRING ELISAYPQVVVVRVPTPWVQSDSDITVLRHLEKMGCRLMNRPQAILNCVNKFWTFQELAGHGVP LPDTFSYGGHENFSKMIDEAEVLEFPMVVKNTRGHRGKAVFLARDKHHLADLSHLIRHEAPYLF QKYIKESHGRDVRVIVVGGRVVGTMLRCSTDGRMQSNCSLGGVGMMCSLSEQGKQLAIQVSNIL GMDVCGIDLLMKDDGSFCVCEANANVGFIAFDKACNLDVAGIIADYAASLLPAGRLTRRMSLLS VVSTASETSEPELGPPASAAVDNMSASSSSVDSDPESTTERELLTKLPGGLFNMNQLLANEIKL LVE hide sequence

RefSeq Acc Id:	XP_006237378 ⟸ XM_006237316
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A4B6 (UniProtKB/TrEMBL), A0A8I6A9U5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MCSSVSGKLWFLTDRRIQEDYPQKEILRALKAKCCEEELDFRAVVMDEVVLTVEQGNLGLRING ELISAYPQVVVVRVPTPWVQSDSDITVLRHLEKMGCRLMNRPQAILNCVNKFWTFQELAGHGVP LPDTFSYGGHENFSKMIDEAEVLEFPMVVKNTRGHRGKAVFLARDKHHLADLSHLIRHEAPYLF QKYIKESHGRDVRVIVVGGRVVGTMLRCSTDGRMQSNCSLGGVGMMCSLSEQGKQLAIQVSNIL GMDVCGIDLLMKDDGSFCVCEANANVGFIAFDKACNLDVAGIIADYAASLLPAGRLTRRMSLLS VVSTASETSEPELGPPASAAVDNMSASSSSVDSDPESTTERELLTKLPGGLFNMNQLLANEIKL LVE hide sequence

RefSeq Acc Id:	XP_006237379 ⟸ XM_006237317
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A4B6 (UniProtKB/TrEMBL), A0A8I6A9U5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MCSSVSGKLWFLTDRRIQEDYPQKEILRALKAKCCEEELDFRAVVMDEVVLTVEQGNLGLRING ELISAYPQVVVVRVPTPWVQSDSDITVLRHLEKMGCRLMNRPQAILNCVNKFWTFQELAGHGVP LPDTFSYGGHENFSKMIDEAEVLEFPMVVKNTRGHRGKAVFLARDKHHLADLSHLIRHEAPYLF QKYIKESHGRDVRVIVVGGRVVGTMLRCSTDGRMQSNCSLGGVGMMCSLSEQGKQLAIQVSNIL GMDVCGIDLLMKDDGSFCVCEANANVGFIAFDKACNLDVAGIIADYAASLLPAGRLTRRMSLLS VVSTASETSEPELGPPASAAVDNMSASSSSVDSDPESTTERELLTKLPGGLFNMNQLLANEIKL LVE hide sequence

RefSeq Acc Id:	XP_006237377 ⟸ XM_006237315
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A4B6 (UniProtKB/TrEMBL), A0A8I6A9U5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MCSSVSGKLWFLTDRRIQEDYPQKEILRALKAKCCEEELDFRAVVMDEVVLTVEQGNLGLRING ELISAYPQVVVVRVPTPWVQSDSDITVLRHLEKMGCRLMNRPQAILNCVNKFWTFQELAGHGVP LPDTFSYGGHENFSKMIDEAEVLEFPMVVKNTRGHRGKAVFLARDKHHLADLSHLIRHEAPYLF QKYIKESHGRDVRVIVVGGRVVGTMLRCSTDGRMQSNCSLGGVGMMCSLSEQGKQLAIQVSNIL GMDVCGIDLLMKDDGSFCVCEANANVGFIAFDKACNLDVAGIIADYAASLLPAGRLTRRMSLLS VVSTASETSEPELGPPASAAVDNMSASSSSVDSDPESTTERELLTKLPGGLFNMNQLLANEIKL LVE hide sequence

Ensembl Acc Id:

ENSRNOP00000028923 ⟸ ENSRNOT00000032690

Ensembl Acc Id:

ENSRNOP00000085776 ⟸ ENSRNOT00000115622

Ensembl Acc Id:

ENSRNOP00000090575 ⟸ ENSRNOT00000104857

RefSeq Acc Id:	XP_063142410 ⟸ XM_063286340
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A4B6 (UniProtKB/TrEMBL), A0A8I6A9U5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142406 ⟸ XM_063286336
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A4B6 (UniProtKB/TrEMBL), A0A8I6A9U5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142419 ⟸ XM_063286349
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063142408 ⟸ XM_063286338
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A4B6 (UniProtKB/TrEMBL), A0A8I6A9U5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142412 ⟸ XM_063286342
- Peptide Label:	isoform X2
- UniProtKB:	A6ILE7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142417 ⟸ XM_063286347
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063142411 ⟸ XM_063286341
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A4B6 (UniProtKB/TrEMBL), A0A8I6A9U5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142409 ⟸ XM_063286339
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A4B6 (UniProtKB/TrEMBL), A0A8I6A9U5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142415 ⟸ XM_063286345
- Peptide Label:	isoform X2
- UniProtKB:	A6ILE7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142413 ⟸ XM_063286343
- Peptide Label:	isoform X2
- UniProtKB:	A6ILE7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142416 ⟸ XM_063286346
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063142407 ⟸ XM_063286337
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A4B6 (UniProtKB/TrEMBL), A0A8I6A9U5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142414 ⟸ XM_063286344
- Peptide Label:	isoform X2
- UniProtKB:	A6ILE7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142418 ⟸ XM_063286348
- Peptide Label:	isoform X3

RefSeq Acc Id:	NP_001414785 ⟸ NM_001427856
- UniProtKB:	A0A8I6A4B6 (UniProtKB/TrEMBL), A0A8I6A9U5 (UniProtKB/TrEMBL)

Protein Domains

ATP-grasp

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZRJ9-F1-model_v2	AlphaFold	D3ZRJ9	1-393	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1560851	AgrOrtholog
BioCyc Gene	G2FUF-43155	BioCyc
Ensembl Genes	ENSRNOG00000023814	Ensembl
	ENSRNOG00000064238	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000104857.2	UniProtKB/TrEMBL
	ENSRNOT00000115622	ENTREZGENE
	ENSRNOT00000115622.2	UniProtKB/TrEMBL
Gene3D-CATH	3.30.1490.20	UniProtKB/TrEMBL
	3.40.50.20	UniProtKB/TrEMBL
	ATP-grasp fold, B domain	UniProtKB/TrEMBL
InterPro	ATP-grasp	UniProtKB/TrEMBL
	ATP-grasp_RimK-type	UniProtKB/TrEMBL
	ATP_grasp_subdomain_1	UniProtKB/TrEMBL
	RpS6_RimK/Lys_biosynth_LsyX	UniProtKB/TrEMBL
KEGG Report	rno:362428	UniProtKB/TrEMBL
NCBI Gene	362428	ENTREZGENE
PANTHER	BETA-CITRYLGLUTAMATE SYNTHASE B	UniProtKB/TrEMBL
	RIBOSOMAL PROTEIN S6 MODIFICATION PROTEIN	UniProtKB/TrEMBL
Pfam	RimK	UniProtKB/TrEMBL
PhenoGen	Rimklb	PhenoGen
PROSITE	ATP_GRASP	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000023814	RatGTEx
	ENSRNOG00000064238	RatGTEx
Superfamily-SCOP	Glutathione synthetase ATP-binding domain-like	UniProtKB/TrEMBL
UniProt	A0A8I6A4B6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A9U5	ENTREZGENE, UniProtKB/TrEMBL
	A6ILE7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-06-01	Rimklb	ribosomal modification protein rimK-like family member B	Rimklb	ribosomal modification protein rimK-like family member B	Data merged from RGD:149736426	737654	PROVISIONAL
2021-08-09	Rimklb	ribosomal modification protein rimK-like family member B			Symbol and Name status set to provisional	45752	PROVISIONAL
2021-03-09	Rimklb	ribosomal modification protein rimK-like family member B	LOC103692220	uncharacterized LOC103692220	Data merged from RGD:9203781	737654	PROVISIONAL
2014-08-25	LOC103692220	uncharacterized LOC103692220			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-11-11	Rimklb	ribosomal modification protein rimK-like family member B	Fam80b	family with sequence similarity 80, member B	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Fam80b	family with sequence similarity 80, member B	RGD1560851_predicted	similar to mKIAA1238 protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1560851_predicted	similar to mKIAA1238 protein (predicted)	LOC362428	similar to mKIAA1238 protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC362428	similar to mKIAA1238 protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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