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Gene: Spata2L (spermatogenesis associated 2-like) Rattus norvegicus

Analyze

Symbol:

Spata2L

Name:

spermatogenesis associated 2-like

RGD ID:

1560840

Description:

Predicted to be active in cytoplasm. Orthologous to human SPATA2L (spermatogenesis associated 2 like); INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 2,2',4,4'-Tetrabromodiphenyl ether.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC498963; RGD1560840; similar to RIKEN cDNA 2610039E05; spermatogenesis-associated protein 2-like protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	68,177,599 - 68,182,122 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	68,176,615 - 68,182,069 (-)	Ensembl				GRCr8
mRatBN7.2	19	51,269,078 - 51,273,605 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	51,269,078 - 51,273,510 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	58,064,014 - 58,068,461 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	58,744,004 - 58,748,467 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	60,962,616 - 60,967,064 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	56,032,607 - 56,037,873 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	56,032,610 - 56,037,077 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	66,737,480 - 66,742,726 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	53,552,911 - 53,557,378 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	50,504,945 - 50,509,409 (-)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Fanconi anemia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dichloroethane (ISO)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

alpha-Zearalanol (EXP)

amiodarone (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

cisplatin (EXP,ISO)

clofibrate (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (EXP)

diazinon (ISO)

endosulfan (EXP)

epoxiconazole (ISO)

fenvalerate (EXP)

folic acid (ISO)

furan (EXP)

genistein (ISO)

iron dichloride (ISO)

Licochalcone B (ISO)

okadaic acid (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorooctanoic acid (EXP)

phenobarbital (ISO)

pirinixic acid (ISO)

propiconazole (ISO)

quercetin (ISO)

tetrachloromethane (EXP,ISO)

tetraphene (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

Triptolide (ISO)

troglitazone (ISO)

valproic acid (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytoplasm (IBA)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Spata2L
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	68,177,599 - 68,182,122 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	68,176,615 - 68,182,069 (-)	Ensembl				GRCr8
mRatBN7.2	19	51,269,078 - 51,273,605 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	51,269,078 - 51,273,510 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	58,064,014 - 58,068,461 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	58,744,004 - 58,748,467 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	60,962,616 - 60,967,064 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	56,032,607 - 56,037,873 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	56,032,610 - 56,037,077 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	66,737,480 - 66,742,726 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	53,552,911 - 53,557,378 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	50,504,945 - 50,509,409 (-)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

SPATA2L
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	89,696,357 - 89,701,705 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	89,696,357 - 89,701,705 (-)	Ensembl			hg38	GRCh38
GRCh37	16	89,762,765 - 89,768,113 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	88,290,266 - 88,295,600 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	16	74,827,200 - 74,832,533 (-)	NCBI		Celera
Cytogenetic Map	16	q24.3	NCBI
HuRef	16	75,458,039 - 75,463,393 (-)	NCBI		HuRef
CHM1_1	16	91,173,990 - 91,179,346 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	95,781,120 - 95,786,573 (-)	NCBI		T2T-CHM13v2.0

Spata2l
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	123,958,994 - 123,962,997 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	123,956,540 - 123,962,972 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	123,232,255 - 123,236,263 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	123,229,801 - 123,236,233 (-)	Ensembl			mm10	GRCm38
MGSCv37	8	125,756,158 - 125,760,109 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	126,118,348 - 126,122,299 (-)	NCBI		MGSCv36	mm8
Celera	8	127,471,307 - 127,475,279 (-)	NCBI		Celera
Cytogenetic Map	8	E1	NCBI
cM Map	8	72.09	NCBI

Spata2l
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955541	3,242,380 - 3,247,330 (-)	Ensembl
ChiLan1.0	NW_004955541	3,242,380 - 3,246,562 (-)	NCBI	ChiLan1.0	ChiLan1.0

SPATA2L
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	99,544,039 - 99,549,457 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	105,433,512 - 105,438,918 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	70,455,469 - 70,460,872 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	90,120,104 - 90,125,303 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	90,120,104 - 90,125,303 (-)	Ensembl			panPan2	panpan1.1

SPATA2L
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	63,874,072 - 63,878,512 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	63,873,005 - 63,878,395 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	63,886,928 - 63,891,381 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	64,101,842 - 64,106,310 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	64,101,885 - 64,106,297 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	64,121,970 - 64,126,422 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	63,959,576 - 63,964,024 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	64,366,149 - 64,370,601 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Spata2l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	24,594,341 - 24,598,403 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936641	347,882 - 353,776 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936641	347,891 - 351,951 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SPATA2L
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	326,746 - 331,740 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	328,534 - 331,334 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	452,476 - 458,799 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SPATA2L
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	75,034,558 - 75,039,867 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	75,031,141 - 75,039,416 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666047	454,939 - 460,825 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Spata2l
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	281,092 - 285,003 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624746	281,132 - 285,003 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Spata2l
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	17	42,839,935 - 42,844,132 (-)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	476
Count of miRNA genes:	198
Interacting mature miRNAs:	233
Transcripts:	ENSRNOT00000021968
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631840	Niddm38	Non-insulin dependent diabetes mellitus QTL 38	3.86		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	19	10329076	74246245	Rat
724546	Kidm3	Kidney mass QTL 3	3.1		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	19	46226778	74246245	Rat
7411549	Bw130	Body weight QTL 130	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	32365311	74246245	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	36289	74246245	Rat
724518	Uae19	Urinary albumin excretion QTL 19	5.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	24093973	69093973	Rat
61423	Cia14	Collagen induced arthritis QTL 14	3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	19	10833618	74246245	Rat
2303628	Vencon9	Ventilatory control QTL 9		0.005	respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	19	23188586	68188586	Rat
2313395	Anxrr26	Anxiety related response QTL 26			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	19	44385134	74246245	Rat
1578764	Stresp19	Stress response QTL 19	3.6	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	19	32539615	74246245	Rat
5135224	Leukc1	Leukocyte quantity QTL 1			eosinophil quantity (VT:0002602)	blood eosinophil count (CMO:0000033)	19	61249161	74246245	Rat
1331788	Rf45	Renal function QTL 45	2.818		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	19	31777888	74246245	Rat
1554318	Bmd5	Bone mineral density QTL 5	12.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	19	23188586	68188586	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2194317	74246245	Rat
1549835	Tcas7	Tongue tumor susceptibility QTL 7		0.001	tongue integrity trait (VT:0010553)	squamous cell carcinoma of the head and neck tumor number (CMO:0001876)	19	41722546	74246245	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2194317	74246245	Rat

Markers in Region

RH143593

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	51,273,187 - 51,273,486 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	56,036,713 - 56,037,011	NCBI	Rnor6.0
Rnor_5.0	19	66,741,586 - 66,741,884	UniSTS	Rnor5.0
RGSC_v3.4	19	53,557,014 - 53,557,312	UniSTS	RGSC3.4
Celera	19	50,509,045 - 50,509,343	UniSTS
RH 3.4 Map	19	714.6	UniSTS
Cytogenetic Map	19	q12	UniSTS

RH141043

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	51,268,827 - 51,269,043 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	56,032,357 - 56,032,572	NCBI	Rnor6.0
Rnor_5.0	19	66,737,230 - 66,737,445	UniSTS	Rnor5.0
RGSC_v3.4	19	53,552,658 - 53,552,873	UniSTS	RGSC3.4
Celera	19	50,504,692 - 50,504,907	UniSTS
RH 3.4 Map	19	712.01	UniSTS
Cytogenetic Map	19	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	92	59	6	356	192	11	141	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109133	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255781	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097938	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC115273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC119635	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000021968 ⟹ ENSRNOP00000021968

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	68,177,602 - 68,182,069 (-)	Ensembl
mRatBN7.2 Ensembl	19	51,269,078 - 51,273,510 (-)	Ensembl
Rnor_6.0 Ensembl	19	56,032,610 - 56,037,077 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000163097 ⟹ ENSRNOP00000111361

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	68,176,615 - 68,182,069 (-)	Ensembl

RefSeq Acc Id:

NM_001109133 ⟹ NP_001102603

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	68,177,602 - 68,182,069 (-)	NCBI
mRatBN7.2	19	51,269,081 - 51,273,552 (-)	NCBI
Rnor_6.0	19	56,032,610 - 56,037,077 (-)	NCBI
Rnor_5.0	19	66,737,480 - 66,742,726 (-)	NCBI
RGSC_v3.4	19	53,552,911 - 53,557,378 (-)	RGD
Celera	19	50,504,945 - 50,509,409 (-)	RGD

Sequence:

show sequence

CAAGGGGCGGGCTTGACACTCTGCGGAAGAGCGAGGATAGACCCAGGCCCAAGCGGAGCTCTCT
GGGATAGCTGGCGACTAGCAGGTAGCACCGCCGCCCTTGGGGACGGTCGGTGGGAGAGGGGTTT
TGGTTGCAAGAGGTTCAGCTGATGGGAGCAGTGCTGTTGATACGAGGATGATCAGCAAGCGGTG
CTGAAGGTGTCACGGGGAGGGGAGGCTGTAGATACTGTGGTCACTGAGCTGTCTCATGGCTGAA
GGGGATCATAGATCCCGGGACTTGCTAAGCTCTCAAGGTCCCTATTTCCAGGTTGGAGGGGGCC
CTGGAGTTGCTGGGTGCGGGGTGGAGAGTGGCACAGCTGAGATGATATGGTCTCTAGTTTGACA
CCTCGTCCCGCGCTCGGTCAGGATGGGCAGCAGCTCGCTGTCGGAGGACTATCGCCTGTGCCTG
GAGCGTGAGCTGCGGCGCGGCCGCGCGGGCGTCTGTGGCGATCCCTCGCTGCGCGCGGTGCTCT
GGCAGATTCTGGTGGAGGACTTCGACCTGCACGGGGCGCTTCAGGACGATGCGCTGGCACTGTT
CACTGATGGCCTGTGGGGCCGTGCTGACCTGGCGCCAGCCCTCCGCGATCTGGCCCGCGCCTTC
GAACTCCTAGAGCTGGCCGCTGTGCACCTGTACCTGCTGCCCTGGAGAAAGGAGTTCACCACCA
TCAAGACCTTCTCAGGGGGCTATGTGCATGTGCTGAAGGGTGTACTCTCTGAGGAGCTCCTGAC
TCGAAGCTTCCAGAAGATGGGCTACGTGCGCAGGGACAACCACCGCCTAATGGTGACCACCCCA
CCCCCTGCCTGCCAGCTGGTGCAGGTGGCTCTGGGCTGCTTTGCTCTCCGGTTGGAGTGTGAGA
TCCTAGGTGAGGTGCTGACCCAGCTGGGTACCAGTGTGCTACCAGCTGAGGAGCTGCTCCGAGC
TCGAAGGGCTAGTGGGGATGTGGCCTCCTGTGTAGCCTGGCTTCAGCAGCGGCTGGCCCAAGAT
GAGGAGCCCCCACCCCTGCCCCCTCGAGGCACACCTGCTGCTTATGGGGCCTCAGTGGACCTGT
ACCAGGACCTGCAGGAAGACGAGAGCTCAGAGGCCAGTCTGTATGGTGAGCCTTCGCCGGGCCT
GGACTCACCTCCTGTGGAACTGGCCTATAGGCCACCACTCTGGGAGCAGAGTGCCAAACTATGG
GGCTCTGGAGGCCAGTCCTGGGACACCCCAGCTGATGAGCTACACCGGGCCAGCAGCCCACCAT
ACGGGGCTCTGGAAGAGGAGCTGGAGCCAGAACCCTCTGCTTTCTCCTTCCTCTCTCTGCGCCG
GGAGCTGAGTCGGTCAGGGGACTTAGCTCCCCCTGAATCCCCTTCAAGCCCTGGGCAAGCCAGC
CCCCGTCACAGGCAGGCAGAAGGAGCAGCACCCTCGGCCTACGGGCCGGCTGTTGAGCCTCTGA
GCTACCAGGCTCATAGCTGCTTGAGCCCTGGCAACCTACCCACCCTCTGCTGTGACACTTGCCG
CCAGCTACACGCTACCCACTGCACTGCCCTATCTGCCTGCCGCCCGACTCATTCACTGCGCATA
CTTCTTGGTGACAACCAGAGACGCCTGTGGCTGCAACGAGCACAGGTGGATACCCTGCTCTATG
ACAGTCCTGGGGCCCATCCCTAGGCCCAGGTGGACCCCAAGTCTTCTGGGGACACAGTTTTCAC
GGTGCTTCTTTTAGGAAAGGGCCTAGGCCACTGACTCCCCTGGCCTTCCTATTCCCCAGGGGAG
TCCAGGACCTGCAGGTGAAAGAGGGTAGAGCCTTCATGGAATGCTCTTGCCTGGTGCCCTACCA
GACATCCTCACTGACATGCCCGTGTCAGCCCTGGTGCAGCAGGCCGAGCTCAATCAACAAGATC
CTTCCCTCATGTCCCTCTCCTCACGCCCAGATGTGCTGGGTAGAGAAGTCCAGGTTACCCATGT
TACAGTACCCAAACTCACTTTAAGACCCCAGCCTATGAACTGCCTGAAGCTCCCTACCTGACCC
CTGCAGTCTATGACTGAGGATGTCCCTCTCTCCATGTACTGAGAAACCTCACCCAGGGGTTTGC
TCAAGAGACTGCAGGTGACACAGTAAGATCGCTGAGTTAGGTTTGTGCCATGTGGGAGGGTCTG
AAAGAACAGAGCTAACTTAGCTGTGAGGACCCCGGTTCACCTCTGCTGTTAGTAAGGAGGCATT
GCAAAAACAGTGGGAGGCACACTCCCAGGCAGTGGGAGGAGCTGTCACCCCCATCCAGCAGGAA
TGATTCTCAGCAATCAGCTGCCTACCAACCAAGGGGGAAGTGCACACAGGCCACTTCCCGGGCG
ACTGCCAAAAAGCAGCTCACTGCCCCTTGGAGCTCATTCTGGGCACAGAGCTAACCAGGAAGAA
TTATACCCTCATCTCCCATGGGGGTAGCCCAGGACCCCTCATTAGGGCCCCTAAACCACTCATC
CTCAGGAGGGGGATAATAAAGGGCTGGGTTTTCATCAACCACTCAGAGGCCCAGACTCCGAGAT
CACCATTCTGCAAACACTCCCTCTAGTGGCACCCCATCAGCCAAGCCTGTTCCCACTCCTCCTG
CAGGCCCGCAGAGGACACTGTCCCCCCTCAACTGAGTCTGTTCCTACTCCTCCTGCAGGCCCAC
AGAGGACACTGTCCCCCCTCAGCTGAGTCTGTTCCCACTCCTCATGCAGGCCTCTCAGAGGACA
CTGTCCCCCCTCAGCCAAGCCTGTTCCCACTCCTCCTGCAGGCCCGCAGAGGACACTGTCCCCC
CTCAGCTGAGTCTGTTCCTACTCCTCATGCAGGCCTCTCAGAGGATGCTGTCCCCCCTCAGCTG
AGTCTGTTCCTACTCCTCATGCAGGCCTCTCAGAGGACACTGTCCCCCCTCAGCCAAGCCTGTT
CCTACTCCTCCTACAGGCCCCTCAGAGGACGCTGTCCATGTTGCATGGATCGAACCCCCACAGT
ACATTAAAGGATTGCCAAACT

hide sequence

RefSeq Acc Id:

XM_006255781 ⟹ XP_006255843

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	68,177,599 - 68,182,122 (-)	NCBI
mRatBN7.2	19	51,269,078 - 51,273,605 (-)	NCBI
Rnor_6.0	19	56,032,607 - 56,037,873 (-)	NCBI
Rnor_5.0	19	66,737,480 - 66,742,726 (-)	NCBI

Sequence:

show sequence

AAAAAAAAAAAAAAAAAAAGGTGCCTGAGGTCCTGAGTGAATTGTGTAAGACCGCAGTAAGTCG
AGGAACAGTTTCCCTGAAGTCACCCAGACTGATTCTTGGTGACTACATGATCCAGGTCAGTTTT
GCAGACCTGCAGGTCACACATTTAAGGAGCACCTTCTCCTGGAGGATGAATACATTCATCCTAC
CTCAAATGCTCCCTAACCTATTTTCTCGGACTAAGAAATGAAGTACCAGAGAACAGAGAACAAA
GCCAGCAGAGGCCCTCCTGGGTGCCTCCTGCTCTGTTATTTGTGTGTTAAGTGTCTTGTCTGCC
AGCAGAGGATGTTGGCAACTGGAGTTAGAGCTGGTTGTGAGCTGCCACACTCAGACCCACTGGG
CAATCCACCACCCCACCCGTTTTAAATCGTACCTAAATACACGTGTTTGACCTCCTTTGGTCCA
TGATCAGCCCGCCTAGATAGGCCCCGCCTAGCTGGTATTTGGCTATTCTGTGGGTTGACTTGAG
GAGCCAAAATCCAGTCTGGTTCAGACCTGCTCCAGTGGCACATCTTGGAGACATGTATTACACA
ACCACTGTGTACTCCCACTCCCTGGCCCGTAACTAGGCGATTACCGACCTCAGACTGGTGGAAA
GACTGGAGACAGTGAATCTGAGAGGACCTCAAAAGGTGAGCTGCGAGGGAGAGCCACGCCCAGC
TTCGCCCAGGCCGCGCCCACACCACCACCCTCCTACTTCGCTGAAAGGGCGGCACCCGACTCCA
GCCTCGCCCCCAACGTCACAACCAAGGCCAAGGGGCGGGCTTGACACTCTGCGGAAGAGCGAGG
ATAGACCCAGGCCCAAGCGGAGCTCTCTGGGATAGCTGGCGACTAGCAGGATGGGCAGCAGCTC
GCTGTCGGAGGACTATCGCCTGTGCCTGGAGCGTGAGCTGCGGCGCGGCCGCGCGGGCGTCTGT
GGCGATCCCTCGCTGCGCGCGGTGCTCTGGCAGATTCTGGTGGAGGACTTCGACCTGCACGGGG
CGCTTCAGGACGATGCGCTGGCACTGTTCACTGATGGCCTGTGGGGCCGTGCTGACCTGGCGCC
AGCCCTCCGCGATCTGGCCCGCGCCTTCGAACTCCTAGAGCTGGCCGCTGTGCACCTGTACCTG
CTGCCCTGGAGAAAGGAGTTCACCACCATCAAGACCTTCTCAGGGGGCTATGTGCATGTGCTGA
AGGGTGTACTCTCTGAGGAGCTCCTGACTCGAAGCTTCCAGAAGATGGGCTACGTGCGCAGGGA
CAACCACCGCCTAATGGTGACCACCCCACCCCCTGCCTGCCAGCTGGTGCAGGTGGCTCTGGGC
TGCTTTGCTCTCCGGTTGGAGTGTGAGATCCTAGGTGAGGTGCTGACCCAGCTGGGTACCAGTG
TGCTACCAGCTGAGGAGCTGCTCCGAGCTCGAAGGGCTAGTGGGGATGTGGCCTCCTGTGTAGC
CTGGCTTCAGCAGCGGCTGGCCCAAGATGAGGAGCCCCCACCCCTGCCCCCTCGAGGCACACCT
GCTGCTTATGGGGCCTCAGTGGACCTGTACCAGGACCTGCAGGAAGACGAGAGCTCAGAGGCCA
GTCTGTATGGTGAGCCTTCGCCGGGCCTGGACTCACCTCCTGTGGAACTGGCCTATAGGCCACC
ACTCTGGGAGCAGAGTGCCAAACTATGGGGCTCTGGAGGCCAGTCCTGGGACACCCCAGCTGAT
GAGCTACACCGGGCCAGCAGCCCACCATACGGGGCTCTGGAAGAGGAGCTGGAGCCAGAACCCT
CTGCTTTCTCCTTCCTCTCTCTGCGCCGGGAGCTGAGTCGGTCAGGGGACTTAGCTCCCCCTGA
ATCCCCTTCAAGCCCTGGGCAAGCCAGCCCCCGTCACAGGCAGGCAGAAGGAGCAGCACCCTCG
GCCTACGGGCCGGCTGTTGAGCCTCTGAGCTACCAGGCTCATAGCTGCTTGAGCCCTGGCAACC
TACCCACCCTCTGCTGTGACACTTGCCGCCAGCTACACGCTACCCACTGCACTGCCCTATCTGC
CTGCCGCCCGACTCATTCACTGCGCATACTTCTTGGTGACAACCAGAGACGCCTGTGGCTGCAA
CGAGCACAGGTGGATACCCTGCTCTATGACAGTCCTGGGGCCCATCCCTAGGCCCAGGTGGACC
CCAAGTCTTCTGGGGACACAGTTTTCACGGTGCTTCTTTTAGGAAAGGGCCTAGGCCACTGACT
CCCCTGGCCTTCCTATTCCCCAGGGGAGTCCAGGACCTGCAGGTGAAAGAGGGTAGAGCCTTCA
TGGAATGCTCTTGCCTGGTGCCCTACCAGACATCCTCACTGACATGCCCGTGTCAGCCCTGGTG
CAGCAGGCCGAGCTCAATCAACAAGATCCTTCCCTCATGTCCCTCTCCTCACGCCCAGATGTGC
TGGGTAGAGAAGTCCAGGTTACCCATGTTACAGTACCCAAACTCACTTTAAGACCCCAGCCTAT
GAACTGCCTGAAGCTCCCTACCTGACCCCTGCAGTCTATGACTGAGGATGTCCCTCTCTCCATG
TACTGAGAAACCTCACCCAGGGGTTTGCTCAAGAGACTGCAGGTGACACAGTAAGATCGCTGAG
TTAGGTTTGTGCCATGTGGGAGGGTCTGAAAGAACAGAGCTAACTTAGCTGTGAGGACCCCGGT
TCACCTCTGCTGTTAGTAAGGAGGCATTGCAAAAACAGTGGGAGGCACACTCCCAGGCAGTGGG
AGGAGCTGTCACCCCCATCCAGCAGGAATGATTCTCAGCAATCAGCTGCCTACCAACCAAGGGG
GAAGTGCACACAGGCCACTTCCCGGGCGACTGCCAAAAAGCAGCTCACTGCCCCTTGGAGCTCA
TTCTGGGCACAGAGCTAACCAGGAAGAATTATACCCTCATCTCCCATGGGGGTAGCCCAGGACC
CCTCATTAGGGCCCCTAAACCACTCATCCTCAGGAGGGGGATAATAAAGGGCTGGGTTTTCATC
AACCACTCAGAGGCCCAGACTCCGAGATCACCATTCTGCAAACACTCCCTCTAGTGGCACCCCA
TCAGCCAAGCCTGTTCCCACTCCTCCTGCAGGCCCGCAGAGGACACTGTCCCCCCTCAACTGAG
TCTGTTCCTACTCCTCCTGCAGGCCCACAGAGGACACTGTCCCCCCTCAGCTGAGTCTGTTCCC
ACTCCTCATGCAGGCCTCTCAGAGGACACTGTCCCCCCTCAGCCAAGCCTGTTCCCACTCCTCC
TGCAGGCCCGCAGAGGACACTGTCCCCCCTCAGCTGAGTCTGTTCCTACTCCTCATGCAGGCCT
CTCAGAGGATGCTGTCCCCCCTCAGCTGAGTCTGTTCCTACTCCTCATGCAGGCCTCTCAGAGG
ACACTGTCCCCCCTCAGCCAAGCCTGTTCCTACTCCTCCTACAGGCCCCTCAGAGGACGCTGTC
CATGTTGCATGGATCGAACCCCCACAGTACATTAAAGGATTGCCAAACTGTC

hide sequence

RefSeq Acc Id:

XM_039097938 ⟹ XP_038953866

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	68,177,599 - 68,181,490 (-)	NCBI
mRatBN7.2	19	51,269,078 - 51,272,981 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102603	(Get FASTA)	NCBI Sequence Viewer
	XP_006255843	(Get FASTA)	NCBI Sequence Viewer
	XP_038953866	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL92798	(Get FASTA)	NCBI Sequence Viewer
	EDL92799	(Get FASTA)	NCBI Sequence Viewer
	EDL92800	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000021968
	ENSRNOP00000021968.3
	ENSRNOP00000111361.1

RefSeq Acc Id:

NP_001102603 ⟸ NM_001109133

- UniProtKB:

D4A9H7 (UniProtKB/TrEMBL), A6IZX2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGSSSLSEDYRLCLERELRRGRAGVCGDPSLRAVLWQILVEDFDLHGALQDDALALFTDGLWGR
ADLAPALRDLARAFELLELAAVHLYLLPWRKEFTTIKTFSGGYVHVLKGVLSEELLTRSFQKMG
YVRRDNHRLMVTTPPPACQLVQVALGCFALRLECEILGEVLTQLGTSVLPAEELLRARRASGDV
ASCVAWLQQRLAQDEEPPPLPPRGTPAAYGASVDLYQDLQEDESSEASLYGEPSPGLDSPPVEL
AYRPPLWEQSAKLWGSGGQSWDTPADELHRASSPPYGALEEELEPEPSAFSFLSLRRELSRSGD
LAPPESPSSPGQASPRHRQAEGAAPSAYGPAVEPLSYQAHSCLSPGNLPTLCCDTCRQLHATHC
TALSACRPTHSLRILLGDNQRRLWLQRAQVDTLLYDSPGAHP

hide sequence

RefSeq Acc Id:

XP_006255843 ⟸ XM_006255781

- Peptide Label:

isoform X1

- Sequence:

show sequence

MGSSSLSEDYRLCLERELRRGRAGVCGDPSLRAVLWQILVEDFDLHGALQDDALALFTDGLWGR
ADLAPALRDLARAFELLELAAVHLYLLPWRKEFTTIKTFSGGYVHVLKGVLSEELLTRSFQKMG
YVRRDNHRLMVTTPPPACQLVQVALGCFALRLECEILGEVLTQLGTSVLPAEELLRARRASGDV
ASCVAWLQQRLAQDEEPPPLPPRGTPAAYGASVDLYQDLQEDESSEASLYGEPSPGLDSPPVEL
AYRPPLWEQSAKLWGSGGQSWDTPADELHRASSPPYGALEEELEPEPSAFSFLSLRRELSRSGD
LAPPESPSSPGQASPRHRQAEGAAPSAYGPAVEPLSYQAHSCLSPGNLPTLCCDTCRQLHATHC
TALSACRPTHSLRILLGDNQRRLWLQRAQVDTLLYDSPGAHP

hide sequence

Ensembl Acc Id:

ENSRNOP00000021968 ⟸ ENSRNOT00000021968

RefSeq Acc Id:	XP_038953866 ⟸ XM_039097938
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000111361 ⟸ ENSRNOT00000163097

Protein Domains

Spermatogenesis-associated protein 2 PUB-like

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A9H7-F1-model_v2	AlphaFold	D4A9H7	1-426	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701222

Promoter ID:

EPDNEW_R11746

Type:

initiation region

Name:

Spata2L_1

Description:

spermatogenesis associated 2-like

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	19	56,037,060 - 56,037,120	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1560840	AgrOrtholog
BioCyc Gene	G2FUF-5334	BioCyc
Ensembl Genes	ENSRNOG00000016167	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000021968	ENTREZGENE
	ENSRNOT00000021968.6	UniProtKB/TrEMBL
	ENSRNOT00000163097.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.58.2190	UniProtKB/TrEMBL
InterPro	SPATA2_PUB-like	UniProtKB/TrEMBL
KEGG Report	rno:498963	UniProtKB/TrEMBL
NCBI Gene	498963	ENTREZGENE
PANTHER	PTHR15326:SF7	UniProtKB/TrEMBL
	SPERMATOGENESIS-ASSOCIATED PROTEIN 2/TAMOZHENNIC	UniProtKB/TrEMBL
Pfam	SPATA2_PUB-like	UniProtKB/TrEMBL
PhenoGen	Spata2L	PhenoGen
RatGTEx	ENSRNOG00000016167	RatGTEx
UniProt	A0ABK0M6R4_RAT	UniProtKB/TrEMBL
	A6IZX2	ENTREZGENE, UniProtKB/TrEMBL
	D4A9H7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-28	Spata2L	spermatogenesis associated 2-like	RGD1560840_predicted	similar to RIKEN cDNA 2610039E05 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1560840_predicted	similar to RIKEN cDNA 2610039E05 (predicted)	LOC498963	similar to RIKEN cDNA 2610039E05	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC498963	similar to RIKEN cDNA 2610039E05			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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