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Gene: Tssk4 (testis-specific serine kinase 4) Rattus norvegicus

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Symbol:

Tssk4

Name:

testis-specific serine kinase 4

RGD ID:

1560814

Description:

Predicted to enable several functions, including ATP binding activity; magnesium ion binding activity; and protein homodimerization activity. Predicted to be involved in fertilization; flagellated sperm motility; and spermatid development. Predicted to be located in sperm flagellum. Orthologous to human TSSK4 (testis specific serine kinase 4); INTERACTS WITH aflatoxin B1; bisphenol A; endosulfan.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC290229; RGD1560814; similar to testis-specific serine kinase 4; testis-specific serine/threonine-protein kinase 4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TSSK4 (testis specific serine kinase 4)	HGNC	Ensembl, HomoloGene, NCBI, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Tssk4 (testis-specific serine kinase 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tssk4 (testis specific serine kinase 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TSSK4 (testis specific serine kinase 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TSSK4 (testis specific serine kinase 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tssk4 (testis specific serine kinase 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TSSK4 (testis specific serine kinase 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TSSK4 (testis specific serine kinase 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tssk4 (testis specific serine kinase 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Tssk4 (testis specific serine kinase 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	PPARGC1A (PPARG coactivator 1 alpha)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	TSSK4 (testis specific serine kinase 4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Tssk4 (testis-specific serine kinase 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	F23C8.8	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Drosophila melanogaster (fruit fly):	CG9222	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	SKS1	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	VHS1	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Caenorhabditis elegans (roundworm):	W02B12.12	Alliance	DIOPT (OMA\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	33,108,248 - 33,114,083 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	33,111,734 - 33,114,083 (+)	Ensembl				GRCr8
mRatBN7.2	15	29,140,803 - 29,144,128 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	29,141,792 - 29,144,128 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	30,987,459 - 30,989,820 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	32,134,680 - 32,137,041 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	30,377,023 - 30,379,384 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	34,322,182 - 34,331,187 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	34,328,851 - 34,331,187 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	38,216,301 - 38,222,217 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	33,785,676 - 33,788,037 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	28,717,886 - 28,720,247 (+)	NCBI		Celera
Cytogenetic Map	15	p13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

17alpha-ethynylestradiol (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

aflatoxin B1 (EXP)

aristolochic acid A (ISO)

bisphenol A (EXP,ISO)

Dibutyl phosphate (ISO)

endosulfan (EXP)

formaldehyde (ISO)

furan (EXP)

leflunomide (ISO)

lipopolysaccharide (ISO)

perfluorooctane-1-sulfonic acid (ISO)

quercetin (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

Triptolide (ISO)

trovafloxacin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell differentiation (IEA)

fertilization (IEA,ISO)

flagellated sperm motility (IEA,ISO)

obsolete positive regulation of CREB transcription factor activity (ISO)

peptidyl-serine phosphorylation (ISO)

peptidyl-threonine autophosphorylation (ISO)

protein phosphorylation (ISO)

spermatid development (IEA,ISO)

spermatogenesis (IEA)

Cellular Component

acrosomal vesicle (IEA)

cytoplasmic vesicle (IEA)

motile cilium (IEA,ISO)

sperm flagellum (IEA,ISO)

Molecular Function

ATP binding (IEA,ISO)

identical protein binding (IEA,ISO)

kinase activity (IEA)

magnesium ion binding (IEA,ISO)

metal ion binding (IEA)

nucleotide binding (IEA)

protein binding (ISO)

protein homodimerization activity (IEA,ISO)

protein kinase activity (ISO)

protein serine/threonine kinase activity (IBA,ISO)

protein-containing complex binding (IEA,ISO)

transferase activity (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15964553	PMID:17927909	PMID:20729278	PMID:23054012	PMID:23599433	PMID:25361759	PMID:26940607	PMID:26961893

Genomics

Comparative Map Data

Tssk4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	33,108,248 - 33,114,083 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	33,111,734 - 33,114,083 (+)	Ensembl				GRCr8
mRatBN7.2	15	29,140,803 - 29,144,128 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	29,141,792 - 29,144,128 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	30,987,459 - 30,989,820 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	32,134,680 - 32,137,041 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	30,377,023 - 30,379,384 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	34,322,182 - 34,331,187 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	34,328,851 - 34,331,187 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	38,216,301 - 38,222,217 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	33,785,676 - 33,788,037 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	28,717,886 - 28,720,247 (+)	NCBI		Celera
Cytogenetic Map	15	p13	NCBI

TSSK4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	24,205,696 - 24,208,248 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	24,205,696 - 24,208,362 (+)	Ensembl			hg38	GRCh38
GRCh37	14	24,674,902 - 24,677,454 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	23,744,802 - 23,747,294 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	14	23,744,801 - 23,747,292	NCBI
Celera	14	4,539,396 - 4,541,924 (+)	NCBI		Celera
Cytogenetic Map	14	q12	NCBI
HuRef	14	4,789,934 - 4,792,462 (+)	NCBI		HuRef
CHM1_1	14	24,673,577 - 24,676,105 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	18,404,042 - 18,406,594 (+)	NCBI		T2T-CHM13v2.0

Tssk4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	55,880,893 - 55,889,996 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	55,887,641 - 55,889,996 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	14	55,643,651 - 55,652,539 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	55,650,184 - 55,652,539 (+)	Ensembl			mm10	GRCm38
MGSCv37	14	56,269,019 - 56,271,369 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	14	54,604,253 - 54,606,602 (+)	NCBI		MGSCv36	mm8
Celera	14	53,455,255 - 53,457,605 (+)	NCBI		Celera
Cytogenetic Map	14	C3	NCBI
cM Map	14	28.19	NCBI

Tssk4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955409	36,190,182 - 36,191,801 (-)	NCBI	ChiLan1.0	ChiLan1.0

TSSK4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	25,559,383 - 25,563,656 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	24,775,409 - 24,780,093 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	4,980,178 - 4,984,291 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	23,104,197 - 23,108,151 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	23,104,197 - 23,108,037 (+)	Ensembl			panPan2	panpan1.1

TSSK4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	4,192,060 - 4,195,052 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	4,192,230 - 4,194,685 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	4,113,823 - 4,116,739 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	4,302,930 - 4,305,815 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	4,303,024 - 4,305,448 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	3,993,312 - 3,996,226 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	4,055,139 - 4,058,024 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	4,317,456 - 4,320,341 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Tssk4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	36,035,557 - 36,043,297 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936722	346,070 - 348,418 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936722	345,698 - 348,531 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TSSK4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	75,094,926 - 75,106,331 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	7	75,094,921 - 75,104,189 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	80,362,311 - 80,374,993 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TSSK4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	1,181,695 - 1,191,387 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	1,189,063 - 1,191,287 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666036	12,864,461 - 12,875,672 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tssk4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624820	8,286,307 - 8,289,604 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624820	8,285,440 - 8,345,918 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Tssk4
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	12	69,354,619 - 69,357,342 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Tssk4
45 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	450
Count of miRNA genes:	215
Interacting mature miRNAs:	253
Transcripts:	ENSRNOT00000026819
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1641913	Colcr2	Colorectal carcinoma resistance QTL 2	6.57	0.0197	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	15	2315759	47315759	Rat
5684946	Bss98	Bone structure and strength QTL 98	3.9	0.0026	tibia strength trait (VT:1000284)	tibia ultimate force (CMO:0001734)	15	1	39411584	Rat
1641887	Alcrsp14	Alcohol response QTL 14			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	15	1	44836456	Rat
738017	Hcas7	Hepatocarcinoma susceptibility QTL 7	2.91		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	15	2315759	53331089	Rat
152025253	Hrtrt24	Heart rate QTL 24	3.82		heart pumping trait (VT:2000009)		15	31855803	92671517	Rat
10755503	Bp391	Blood pressure QTL 391	2.37		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	15	22728353	42072050	Rat
10054130	Srcrt8	Stress Responsive Cort QTL 8	2.18	0.0085	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	15	28527732	73527732	Rat
1578646	Bmd18	Bone mineral density QTL 18	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	15	25285835	104695021	Rat
2324620	Coatc3	Coat color QTL 3			coat/hair pigmentation trait (VT:0010463)	pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)	15	22336351	52597086	Rat
1578647	Bmd17	Bone mineral density QTL 17	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	15	25285835	104695021	Rat
61424	Scl1	Serum cholesterol level QTL 1	7.7	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	15	19155762	87086765	Rat
10401805	Kidm51	Kidney mass QTL 51			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	15	2785923	47785923	Rat
2317750	Glom26	Glomerulus QTL 26	4.3		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	15	14926594	71614418	Rat
631550	Bw7	Body weight QTL 7	3.6		body mass (VT:0001259)	body weight (CMO:0000012)	15	22336351	67336351	Rat
1578660	Bss19	Bone structure and strength QTL 19	4.3		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	15	25285835	104695021	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
15	10	60	144	84	83	52	85	52	6	309	177	11	122	58	91	31	11	11

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001271325	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001413946	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_073162	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251939	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274124	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC116083	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC079202	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474049	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000026819 ⟹ ENSRNOP00000026819

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	33,111,734 - 33,114,083 (+)	Ensembl
mRatBN7.2 Ensembl	15	29,141,792 - 29,144,128 (+)	Ensembl
Rnor_6.0 Ensembl	15	34,328,851 - 34,331,187 (+)	Ensembl

RefSeq Acc Id:

NM_001271325 ⟹ NP_001258254

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	33,111,734 - 33,114,083 (+)	NCBI
mRatBN7.2	15	29,141,779 - 29,144,128 (+)	NCBI
Rnor_6.0	15	34,328,851 - 34,331,187 (+)	NCBI
Rnor_5.0	15	38,216,301 - 38,222,217 (+)	NCBI
Celera	15	28,717,911 - 28,720,247 (+)	NCBI

Sequence:

show sequence

TGGGTAAACACTGGGACACTAACTTCACTTCAGTACCCTCCCTTCAGAAGCTCAAGGTGGCTTC
TCGGTAGACAGAGGCTTCTAAGTATCAAAGCTCCCCACTGCGCAAGCCCAACATCATGGGGAAG
GGAGACACCTCGGAAACAGCATCAGCCACTCCAGCCTATCGCTCTGTCATGGAGGAGTATGGCT
ATGAGGTGGGCAAGGTCATTGGCCATGGCTCCTATGGAACTGTCTATGAGGCTTACTACACCAA
GCAGAAGGTCATGGTGGCTGTCAAGATCATCTCAAAGAAGAAGGCCTCTGAAGACTACCTTAAC
AAGTTCCTACCACGTGAGATACAGGTAATGAAAGTCTTACGGCACAAGTACCTCATCAACTTCT
ATCAGGCCATTGAGACCACGTCCCGAGTGTACATCATTTTGGAGCTGGCTCAGGGCGGTGATGT
CTTGGAATGGATCCAACGCTATGGGGCCTGCTCTGAGACCCTTGCTGGCAAGTGGTTCTCCCAG
ATGGCCTTGGGCATCGCTTACCTGCACAGCAAGGGCATCGTGCACCGCCTGACCCCCAGCCTTT
CTGCTGCTGGTAGGGACTTAAAGTTGGAGAACCTGTTGCTGGACAAGCGGGAGAATGTGAAGAT
ATCGGATTTTGGCTTCGCCAAGATGGTGCCTTCTAGCCAGCCTGTGCGTAGTAGCCCTTCTTAC
CGCCAAATGAACTGCCTTTCCCACCTCAGCCAGACCTACTGTGGCAGCTTTGCTTACGCCTGCC
CGGAGATCTTGCTAGGCTTGCCTTACAACCCTTTCCTGTCTGACACCTGGAGCATGGGCGTCAT
CCTCTACACCCTAGTGGTCGCACGGCTGCCTTTTGATGACACCAATCTCAAGAAGCTGCTGAGA
GAAACCCAGAAGGAGGTCACTTTCCCAGCTAATCTCACCATCTCCCAGGAGTGCAAGGGCTCCA
GCATAAAACCAGGGCCCCAGCCCCCTTCACCAGAGTAGTGCGATGGGCCATCCTGCTTCTTCCT
TAGGTCCAGCTGCTCAGTGCCTGTGCTCACAAAGGGGGACAAGCTCAGCCAAGCCCTCTCTCTC
CCCTGCCCTAGAACCTGATCCTCCAGTTGCTACGCCCAGCTACCAAGCGTGCCACCATCCTAGA
TGTCCTCAGGGACCCCTGGATGCTCAAGTTCCAGTCTGAGCAACCCTCGAACGAAATCAGGCTG
CTGGAGGCCATGTATCAACCCGCCAGCACCACCGCTAATCGCCACCAATCCTTGGAAATCACAA
CTTGAAAGTGGCTGAGGCAGGAGGTTAAGGAAAAAAGCAATAGAGACTGGGGGGAAAATCTTTT
CTATAAAATAAACCTAATTAGTTTCATCATGA

hide sequence

RefSeq Acc Id:

NM_001413946 ⟹ NP_001400875

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	33,111,734 - 33,114,083 (+)	NCBI
mRatBN7.2	15	29,141,779 - 29,144,128 (+)	NCBI

RefSeq Acc Id:

NR_073162

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	33,111,734 - 33,114,083 (+)	NCBI
mRatBN7.2	15	29,141,779 - 29,144,128 (+)	NCBI
Rnor_6.0	15	34,328,826 - 34,331,187 (+)	NCBI
Rnor_5.0	15	38,216,301 - 38,222,217 (+)	NCBI
Celera	15	28,717,886 - 28,720,247 (+)	NCBI

Sequence:

show sequence

GCCCAGCATCCCAGACTTGTGTGACTGGGTAAACACTGGGACACTAACTTCACTTCAGTACCCT
CCCTTCAGAAGCTCAAGGTGGCTTCTCGGTAGACAGAGGCTTCTAAGTATCAAAGCTCCCCACT
GCGCAAGCCCAACATCATGGGGAAGGGAGACACCTCGGAAACAGCATCAGCCACTCCAGCCTAT
CGCTCTGTCATGGAGGAGTATGGCTATGAGGTGGGCAAGGTCATTGGCCATGGCTCCTATGGAA
CTGTCTATGAGGCTTACTACACCAAGCAGAAGGTCATGGTGGCTGTCAAGATCATCTCAAAGAA
GAAGGCCTCTGAAGACTACCTTAACAAGTTCCTACCACGTGAGATACAGGTAATGAAAGTCTTA
CGGCACAAGTACCTCATCAACTTCTATCAGGCCATTGAGACCACGTCCCGAGTGTACATCATTT
TGGAGCTGGCTCAGGGCGGTGATGTCTTGGAATGGATCCAACGCTATGGGGCCTGCTCTGAGAC
CCTTGCTGGCAAGTGGTTCTCCCAGATGGCCTTGGGCATCGCTTACCTGCACAGCAAGGGCATC
GTGCACCGCTCCCGGTCTAATACTAAGCCCTCTCCCCAGCCTGACCCCCAGCCTTTCTGCTGCT
GGTAGGGACTTAAAGTTGGAGAACCTGTTGCTGGACAAGCGGGAGAATGTGAAGATATCGGATT
TTGGCTTCGCCAAGATGGTGCCTTCTAGCCAGCCTGTGCGTAGTAGCCCTTCTTACCGCCAAAT
GAACTGCCTTTCCCACCTCAGCCAGACCTACTGTGGCAGCTTTGCTTACGCCTGCCCGGAGATC
TTGCTAGGCTTGCCTTACAACCCTTTCCTGTCTGACACCTGGAGCATGGGCGTCATCCTCTACA
CCCTAGTGGTCGCACGGCTGCCTTTTGATGACACCAATCTCAAGAAGCTGCTGAGAGAAACCCA
GAAGGAGGTCACTTTCCCAGCTAATCTCACCATCTCCCAGGAGTGCAAGGGCTCCAGCATAAAA
CCAGGGCCCCAGCCCCCTTCACCAGAGTAGTGCGATGGGCCATCCTGCTTCTTCCTTAGGTCCA
GCTGCTCAGTGCCTGTGCTCACAAAGGGGGACAAGCTCAGCCAAGCCCTCTCTCTCCCCTGCCC
TAGAACCTGATCCTCCAGTTGCTACGCCCAGCTACCAAGCGTGCCACCATCCTAGATGTCCTCA
GGGACCCCTGGATGCTCAAGTTCCAGTCTGAGCAACCCTCGAACGAAATCAGGCTGCTGGAGGC
CATGTATCAACCCGCCAGCACCACCGCTAATCGCCACCAATCCTTGGAAATCACAACTTGAAAG
TGGCTGAGGCAGGAGGTTAAGGAAAAAAGCAATAGAGACTGGGGGGAAAATCTTTTCTATAAAA
TAAACCTAATTAGTTTCATCATGAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006251939 ⟹ XP_006252001

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	33,108,248 - 33,114,083 (+)	NCBI
mRatBN7.2	15	29,140,808 - 29,144,128 (+)	NCBI
Rnor_6.0	15	34,322,182 - 34,331,187 (+)	NCBI
Rnor_5.0	15	38,216,301 - 38,222,217 (+)	NCBI

Sequence:

show sequence

CTCCTCCGGGTTGTCCGCCGCTGCGCCTGATTGCCGCGGCTGCTGCCACGTCGCCAGCGTCCGC
ACTCGGCTCGTTCAAATGCTCCTCGAAGAGCTCTGGTTCGCCCGCGATCCGGCCCCGCCACGAA
TTCCACGAAGTTCGCTCCCCGAGCCACCGAACGATACCAGTTGTCGTCCGGGCGAGCAGCACCG
CCGCCCAGACACGTCAGTCTTACCACTTCCGCCTTCGCGGACGGGGACCTCAGCTCAGGGAAGG
CGGGAAGGAAGGCTCCTCTTCTGAGCGTGTCGCGGGCAGCTTCCCACAGGGTCTCGCGCAGGCT
GGGCTGCCCTCCGTAGGTTGGAGAGAGACGGCCGGGGAGCGGGAGCCGGGCCGGGTAAAGACGG
GACCCGCCCCCGGCTGCTGAGGAACGCTTGACGCGGAAAGTTGCCCCTAACCTGAGCAGGGCGG
GGCTTTATGTGGGTTCCCACGCCAGGGACCTGTGGCCTCAAACACCTAGGTAAAGGTTCCCCTC
CGAGGCTTTCTGGAGGCACACACCGGTCATTGTTGGCAACAAGCATGTGGGAGCTGGGCGAGGT
GCACCTACAGTTTGCCATTTCACCCCGCGAGTTGTGCGGGTTGACATAGCGGTTTTTGATCGGA
AGTAGGTTTTTGTTTTGTTTTTAAATCTGGAATCCCTGCAGACCTCGAACTCGGGGGTCTTTTG
AGTCTCCGCCTTCAGAGTTTTCAGCGCTTACAGGTACACACCACCGTACCTCATTTCCGTCATT
TTGTTCGCAAGTGTGTCTGTGGGACATTTGGGCTTCTCCCTAGTTTTGCAGGTTGAAAACGTTT
ACTTTTGTCTGGCTCAGCCATTCTGAAGAGGCTCTGTTCTCGAGGATTCCCTCCAAACAGTGGC
CACTTTCACTTGGCCACATGGAAGCAAACGGGAGGAAGCTGACTTAAAGTTTTCTAACCTGGCG
GAAGCAAGTACTGAGGGAAATCACAAGCAGCCATTCTTTTCCGCACTCCTACGACTGTTTTTTC
CCGGTCACCCACTGTCCTGAAACAGTGAGATTCTAGGAAGTTGGCGTTGAGTCAGACACAGTAG
CTTTTGTTTTGTCCCCTTTGCTCTTACCGAGACAGTGTCTTGCCGCGTTGCCCGACTGGCCTTG
GAACTCCAGCTGAAGCAATATTCCTGCCTCGGCTGCGTGAGTAGCTGGGACTGTAAGTGTGCAA
GACTTGCATTACTGAGGCAGGCCTGACTGAGATTTGTGGGTAGGAATAACTTAAGATGCTTCCT
TCTGATGACCTACCTAGTGAAGCCAGAAATCAAAGCTTCTGTTAGTACCTCTCAAATGCAAGCT
CCTTTGGTTTGTTTCCGATTATCTTTCCATATTTGCTTTCCATCATTTTCTTGATGTAGAGGCC
CTCTTTCATGTCAACCATCTTGCTAGTCTCCTATCCATCACGACCATCCCCACCCCCACCCCTG
GGGACCATTTTTCAAACCGCTACTGAAAGGATTGTTGAACGGGAGGAGAAGGTGCCGAGCATCA
GGTTTTGTGGTTTTATTGAGCCAGGTTTCTACAGCCTCATCTGCCCTCAAACAGTGATCCTCTT
GCCTCAGCAAGGGTTATAAGGGTGAACCACTGTGCTTCATTTGTTTTTATTTCTCCCTTTTCAT
AGATATCTAGCTTTAAAAAAAAATGTTGTGTGTATGCCACTTAGGTGGGGGTGCCCAAGTAGGT
CAGAAGAGGATGTTGGTTCCTCTGTAAAGTGAATTAGAGTGAGTTACATGTTGCTGAGTGTGGA
TGCTAGGAACTAAACTCGGGACCTTTGAAAGAGCAAGCACAAAGTTCTCTTAACCACTGAGTCA
TCTCTCCTCCCAATTTTTTTTTTTTTTTTTTTTTTTTTGGACAAGCTCTGATTTTTATGTATAA
CCAACTTTGACATGACAATGTAAAGTAGAAAATAGCTTAACACGATGCCTTACAGAGCCACATC
CTAATGCTAACCCTAATTCAGACAAAGCAGAAGAGGGCATCAGATCCCCATTACAGATGGTTGT
GAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTTT
AACCGCTGAGCCATCTCTCCAGCCCTGGATATCATTTCTTAAGTCTTGTATTCTCCCTGTGTAG
ACTGCTTACCACCTTTCTCTACTTATTTGACGAAAGAACTCCACTCTCTGAACAGAGCAGATCA
TACTTTTCACAGAAGTCCTTCCGTGTTTGTCTTATCACCTCATCTCAATGTGCTGGTGTATTTT
GTGTGTCTCTTTTATAATTTCAAACCCCTTTCAAGGAGACTAACTTACCCCTCTTTTTGTGTTC
AGAATTTAGCAGGGTTCTTGTATGTACTGGGCAGCTCAAAATATGTTCCTTGAACAACTTAGTG
TATCCTCTATCTGTGATGAGAGATGACCAGTTTGCTACCAAACCGCCTATCCAGGGCTGGTGAG
TGTATCCTCTATCTGTGATGAGAGATGACCAGTTTGCTACCAAACCGCCTATCCAGGGCTGGTG
CATGCACACTGATGAGGAGTGCTGGGCACATCTCCCTAACTGTGATACACTTTGGGCAGTTCTT
TAATTGTACTAGGTTGTGGCACTGAATTCCAGCAGACCTTGGAACTGCCGTGCAAGCAGGGTCA
CATACTCAATAGGTGGGACTTGACAAGTCAATCATGGTGTAGTCATTTATATTGGAAGATGTTC
AGGTTTTGAGACCCTATCTCAAAGCAAACAAAAATACCCAAGGTTGTGGTGACTCGAATGAAAG
GCCCCACGTAGGCTCAGGCGTTAGGAGTTTTGGTTCCCAATTTATGGCAGTGTTTAGGGAGGTT
TAGGAGTATGGCCTTGTTTGAGAGTACTGGAGGCATCTTTGAGAGTTGGCTCAATTTCCTGCTT
GCAGTTCAAGACAGGACCCTCTGGAACTATAAATGCAAATAAACTGTTTTCTGTAAATTGTTTT
GGTCATGGTGTTTTATCACAGCAATAGAAAAGCAATACAAAGGTGGAAGTCAGCCAGCATCCGC
CTCTAACCTCCACATGCATGTGAACGCTCGTAACAAGTGGACAGAACCCCTTAGCAATCCTCTT
ACCTTTGCCTCCTGAGTGCTCAGATCCCAGGCACACACCTGTCATGCCCAGGTTTGCCACACGG
AACCACACAGACCTGAGCACACCTGGAGCCTGGCTAGCTTTATGTGAGCTTTGGGAAGGAGGAA
CCTCAGTTGAGAAAATGCCCCCTGTAGACAGACCTGTTGTGCATTTCCTGATCTGATGATTGAT
TTGGAAGGGCCCACTCACTGTGGGAGGTGTGTGTGAGGGGTGCTGGGCTATGGTCCTGGGAACT
GTAAGAAACAGGCTGAACAAGCCACAGGTAGCAAGTCAGTAAGTAGCACTCCCCCATGGCCTCC
GCAGCAGTTTGTGGTTTCCTCCCTTGAGTTTTTGCCCTGAGTTCCCTGAATTATGAACAACAAG
CTGTAAAATGAGCTGAACCCTTTCCTCCTCAAGTTCCTTGTGGGTTTGGTGTTTTATCACAGCA
ATAGAAACCCTAAGGCACTGCCCTTCTCACTTGACCGCTCCCTAACTTTGTTCTTCCTTCCAAC
TGAGACTTGCAGCTCATCTCCCAGCCTCTGCTTTGTTTCTAGCTTCCTTCTCTAGAATGTAGAG
TCCGCATTCCATCATTTCAGCCGCATTCTTACCTGAGATTTTGTTTTGTTCTGAGGCAGGTTCT
TTGTAGCCCTAGCTGGCCTAGAACTCTATGTATAGACGAGGCTGGCCTTGGAGCTCACTAAGAT
CGTCTGCCTGTACCTCCCAAGTGCTGGGATTAAAGAGTGTGAACAAGTGTATGGATGCCAGAGG
TTGACCATGCTGTCCCCTGGAGCTCTCTGATGTGGCTAGGCTGTCTGGCCAGTGAGCTCTAGGG
TCTTCCCTGCTTGTGCTTCCTTCCCAGCCCTGAGGTCACAAGTGCTCACCAGCTTCTTTCTCGG
GTGCTAGGAATCGAACTGAGGGCTTGATGCTTATGAAGCAAGTACTTCACCGACTGAGAACTTC
TCCAGCCCCAGCTTCTCAAACATCTGCCATCACTTGAGAACTCTGTATAACCTACTAGGCTGAT
GATCTAAGATATGCAGCTGTGGCCGTGTGTGCATATAATCCCAGTACTTGGGAGGCTGAGGCAG
TAGAATGATAAGTTTAAGGCCAGGCAAGACTAACAGAGACCTTCAAAACCAGGAAATCCTGAGT
TCTGAAGGGAAAGTTGGCCTTTGCCAGAGGAGGAAGAGGAGAATATTTGCTAAGCTGGCACAGG
CTTGCAATCCCCACTGCTGTGAAGGCCCAGACAAGCCTCTATCGCAAGCTTGGTGCCTGCATGG
TTAACTTAACGTTAGACTGTCAAAAGAAGGGAAAAAGAAACAGGCATAGAGCTCTTAGGACATT
TGTCTGTCATGTGAGAGGCTGCAGATTCAAACACTGGAGGGATTGGGGAGGCTAAGGCAGGAGG
ATCTGAAATTGAAGGCCAACCTAGGATACATACATAGTGATACCTTTTCTGGAGAGAGAGAGAG
ACGGAGAGACAGAGAGACAGAGACAGAGACAGAAATATCCGCAAACCAAATGAAAAAGCACAGA
GCTGTAGCAGATCTGAGAAGCAGGAGGATTTCAATTTTGAGACCAGCCTAGGATACATACTGAG
ACCCTAAACCCCATAGTAAAAGAACAAAACAAAAGACAAAATTGGAAAGGCAAAGTTTATCACA
GGGCTGATGTAAAGGTATTAACTTGATCCTGAGAATCAGCAGACAGTAAGTTGTTTTAGATTAT
TTTGTGTTTACCAGCTTGAGTTTATGTGCACCTCGTTTGCACATGAGTCCATGGAGGCCGGAGG
AGGGTATTAGCTGCCCTGAAACCTGAATTACAGGGGCTGCTCTATGGCTGCTGAGAACCAAACC
CTGCTTCTCTCCGAGAGCAGCAAGCATCTTAGTCACTTAATGTCTCTAGCTTCAACTTAGTCTT
GAATGGAAATAAAAATCAGATGTGTGAGGTTAGGGTGAGGGCTCAATGAGCAAGATGGCCAGCA
TGAAAACCTCATATACTTGGTTTTTTTTCCCCCATACACTTGTAACCCCAGAATTGGGTAGTAG
AGATAAGTGGATGCAGAAAGCTCACTGGCTACCCACATTAGCCAAAATGGCAAGCTTCCAGGTC
ACTAGCAGATTCAAGGCTATAAGGAAGTGTGACCAGAAAACACCCAATGTCCTGCTCCGGCCTC
TGCATGTGTGGACACACGTGTCCATACATAAATGCTTCAACTGGAGGGGAGCAGCAGGCTTGCA
AGTGACCAGTTTATTGATAGGGGGTTGTGCTGAGCAGAAATGGCAGTGGGCATAGAGCTGTGAG
TGCATTATCTTTATATGTATGGTGTATGGGTAACTATAAGAACATGCACCCGTGTTCATATGGA
AGCTAAAGGAGGACATCAGATGTCCTCCATCACTCTTTGCCTTATTCCTTTGGGGCAGGGTCTT
ACTGAACCAGAAGTTTGCATCTCTGGAGTAGGTGGGAAGTGAGCAAACCCCAGTGATACTCTCA
TCCACCTTGCTCAGAGCTGGGACTGAACTCCAGTCTTCGTGCTTGAACAGCAAGAGCTCTTAAC
TGCTGAGTGATCTCTCTAGACCCTTCAAGGGCTTTATGAATGAAAAAAAAAATAGGTTGAAGAG
ACGGGATTTGGTGATATAATATATTGGATGTAGGCACGAAGGCAGACAGTGCTGGTGTGATATT
TGATGTCTATGTTCAGGACAACATGGAAGTCTTAGAGTAGGAAATAGTTCAGTTTGGATAGGAA
TTTGAGGTGCAGAGAGAAGACATGTTCCTGTAATATTTAGTAAGCAAGTAAGCAGATAGGCACA
GTCTTGAACTCCAGTAAGTATCTGGGTGGAACTGGCACAAGGAGCCATCAGAATAAACATGAAA
TCTTAGGGCAAGAGCCTGGGAGGAAGTGAGGGTCCGAGAAAAGGAAGCTTGTGATTTAGGCATG
GACAGGGGCTTGGGAGAATGGGGGTTGACGGGAGCAAACGGAAGGCTCTAGGCTTAATCAACAG
TGAAAACAAGAGAAAACTGAAAACTGGAGATGATGGTGCTCCCATGGGAGAGTGACTGAAAGGA
TGGGACAAACCAAGAGCATCCCCGATCATATGAAGCAAGCATGCAGGGCAAGCCTGAATTCAGA
CCGTGCTTCAGCACCGTGCAGTCCTGTGTACACCCTGACAAGTTTCTCACGCTGGATTATAGAA
GTGTAGACACTGTTGACCTCAGTGGTTAGTTTAATGTAGTATATTCTGCATATTATCTACCACC
GCATGGCAGACACCCAGTAACAAAGGGGCCACAGGGGAGACTTACCGGTTGTGTAAAGTGTCTT
TTGTAATGAATATGTTCCAAATTGCACTTGGTTTCAAGCTTCGTGGCCAACAGTGAGAAAAGGT
GTATGGAACTTGGGACCGTGGAAGTTCTGTAACTAAGACATGGAAGTAACAACAGCCAGCCAAG
ACAAAAAGAATGTTCTTTTCTTTCCCCTTCCAAGTTCTTAGTGAAGGGCCAAGCCCAGCATCCC
AGACTTGTGTGACTGGGTAAACACTGGGACACTAACTTCACTTCAGTACCCTCCCTTCAGAAGC
TCAAGGTGGCTTCTCGGTAGACAGAGGCTTCTAAGTATCAAAGCTCCCCACTGCGCAAGCCCAA
CATCATGGGGAAGGGAGACACCTCGGAAACAGCATCAGCCACTCCAGCCTATCGCTCTGTCATG
GAGGAGTATGGCTATGAGGTGGGCAAGGTCATTGGCCATGGCTCCTATGGAACTGTCTATGAGG
CTTACTACACCAAGCAGAAGGTCATGGTGGCTGTCAAGATCATCTCAAAGAAGAAGGCCTCTGA
AGACTACCTTAACAAGTTCCTACCACGTGAGATACAGGTAATGAAAGTCTTACGGCACAAGTAC
CTCATCAACTTCTATCAGGCCATTGAGACCACGTCCCGAGTGTACATCATTTTGGAGCTGGCTC
AGGGCGGTGATGTCTTGGAATGGATCCAACGCTATGGGGCCTGCTCTGAGACCCTTGCTGGCAA
GTGGTTCTCCCAGATGGCCTTGGGCATCGCTTACCTGCACAGCAAGGGCATCGTGCACCGGGAC
TTAAAGTTGGAGAACCTGTTGCTGGACAAGCGGGAGAATGTGAAGATATCGGATTTTGGCTTCG
CCAAGATGGTGCCTTCTAGCCAGCCTGTGCGTAGTAGCCCTTCTTACCGCCAAATGAACTGCCT
TTCCCACCTCAGCCAGACCTACTGTGGCAGCTTTGCTTACGCCTGCCCGGAGATCTTGCTAGGC
TTGCCTTACAACCCTTTCCTGTCTGACACCTGGAGCATGGGCGTCATCCTCTACACCCTAGTGG
TCGCACGGCTGCCTTTTGATGACACCAATCTCAAGAAGCTGCTGAGAGAAACCCAGAAGGAGGT
CACTTTCCCAGCTAATCTCACCATCTCCCAGGAGTGCAAGAACCTGATCCTCCAGTTGCTACGC
CCAGCTACCAAGCGTGCCACCATCCTAGATGTCCTCAGGGACCCCTGGATGCTCAAGTTCCAGT
CTGAGCAACCCTCGAACGAAATCAGGCTGCTGGAGGCCATGTATCAACCCGCCAGCACCACCGC
TAATCGCCACCAATCCTTGGAAATCACAACTTGAAAGTGGCTGAGGCAGGAGGTTAAGGAAAAA
AGCAATAGAGACTGGGGGGAAAATCTTTTCTATAAAATAAACCTAATTAGTTTCATCATGA

hide sequence

RefSeq Acc Id:

XM_063274124 ⟹ XP_063130194

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	33,108,248 - 33,114,083 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001258254	(Get FASTA)	NCBI Sequence Viewer
	NP_001400875	(Get FASTA)	NCBI Sequence Viewer
	XP_006252001	(Get FASTA)	NCBI Sequence Viewer
	XP_063130194	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH79202	(Get FASTA)	NCBI Sequence Viewer
	EDM14257	(Get FASTA)	NCBI Sequence Viewer
	EDM14258	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000026819
	ENSRNOP00000026819.6

RefSeq Acc Id:	NP_001258254 ⟸ NM_001271325
- Peptide Label:	isoform 1
- UniProtKB:	A0A0G2QC55 (UniProtKB/TrEMBL), A6KH29 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGKGDTSETASATPAYRSVMEEYGYEVGKVIGHGSYGTVYEAYYTKQKVMVAVKIISKKKASED YLNKFLPREIQVMKVLRHKYLINFYQAIETTSRVYIILELAQGGDVLEWIQRYGACSETLAGKW FSQMALGIAYLHSKGIVHRLTPSLSAAGRDLKLENLLLDKRENVKISDFGFAKMVPSSQPVRSS PSYRQMNCLSHLSQTYCGSFAYACPEILLGLPYNPFLSDTWSMGVILYTLVVARLPFDDTNLKK LLRETQKEVTFPANLTISQECKGSSIKPGPQPPSPE hide sequence

RefSeq Acc Id:	XP_006252001 ⟸ XM_006251939
- Peptide Label:	isoform X1
- UniProtKB:	A6KH28 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGKGDTSETASATPAYRSVMEEYGYEVGKVIGHGSYGTVYEAYYTKQKVMVAVKIISKKKASED YLNKFLPREIQVMKVLRHKYLINFYQAIETTSRVYIILELAQGGDVLEWIQRYGACSETLAGKW FSQMALGIAYLHSKGIVHRDLKLENLLLDKRENVKISDFGFAKMVPSSQPVRSSPSYRQMNCLS HLSQTYCGSFAYACPEILLGLPYNPFLSDTWSMGVILYTLVVARLPFDDTNLKKLLRETQKEVT FPANLTISQECKNLILQLLRPATKRATILDVLRDPWMLKFQSEQPSNEIRLLEAMYQPASTTAN RHQSLEITT hide sequence

Ensembl Acc Id:

ENSRNOP00000026819 ⟸ ENSRNOT00000026819

RefSeq Acc Id:	NP_001400875 ⟸ NM_001413946
- Peptide Label:	isoform 2

RefSeq Acc Id:	XP_063130194 ⟸ XM_063274124
- Peptide Label:	isoform X2

Protein Domains

Protein kinase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2QC55-F1-model_v2	AlphaFold	A0A0G2QC55	1-292	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699679

Promoter ID:

EPDNEW_R10202

Type:

initiation region

Name:

Tssk4_1

Description:

testis-specific serine kinase 4

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	15	34,328,838 - 34,328,898	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1560814	AgrOrtholog
BioCyc Gene	G2FUF-13701	BioCyc
Ensembl Genes	ENSRNOG00000019789	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000026819	ENTREZGENE
	ENSRNOT00000026819.9	UniProtKB/TrEMBL
Gene3D-CATH	Transferase(Phosphotransferase) domain 1	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7131733	IMAGE-MGC_LOAD
InterPro	Aur-like	UniProtKB/TrEMBL
	Kinase-like_dom	UniProtKB/TrEMBL
	Prot_kinase_cat_dom	UniProtKB/TrEMBL
	Protein_kinase_ATP_BS	UniProtKB/TrEMBL
	Ser/Thr_kinase_AS	UniProtKB/TrEMBL
	TSSK4_cat	UniProtKB/TrEMBL
KEGG Report	rno:290229	UniProtKB/TrEMBL
MGC_CLONE	MGC:94261	IMAGE-MGC_LOAD
NCBI Gene	290229	ENTREZGENE
PANTHER	MAP/MICROTUBULE AFFINITY-REGULATING KINASE	UniProtKB/TrEMBL
	SERINE/THREONINE-PROTEIN KINASE IAL-RELATED	UniProtKB/TrEMBL
	SERINE_THREONINE-PROTEIN KINASE MARK2	UniProtKB/TrEMBL
Pfam	Pkinase	UniProtKB/TrEMBL
PhenoGen	Tssk4	PhenoGen
PIRSF	Integrin-linked_kinase	UniProtKB/TrEMBL
PROSITE	PROTEIN_KINASE_ATP	UniProtKB/TrEMBL
	PROTEIN_KINASE_DOM	UniProtKB/TrEMBL
	PROTEIN_KINASE_ST	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000019789	RatGTEx
SMART	S_TKc	UniProtKB/TrEMBL
Superfamily-SCOP	Kinase_like	UniProtKB/TrEMBL
UniProt	A0A0G2QC55	ENTREZGENE, UniProtKB/TrEMBL
	A6KH28	ENTREZGENE, UniProtKB/TrEMBL
	A6KH29	ENTREZGENE, UniProtKB/TrEMBL
	Q6AY42_RAT	UniProtKB/TrEMBL
UniProt Secondary	D4A7Q4	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-28	Tssk4	testis-specific serine kinase 4	RGD1560814_predicted	similar to testis-specific serine kinase 4 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1560814_predicted	similar to testis-specific serine kinase 4 (predicted)	LOC290229	similar to testis-specific serine kinase 4	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC290229	similar to testis-specific serine kinase 4			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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