Zfp827 (zinc finger protein 827) - Rat Genome Database

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Gene: Zfp827 (zinc finger protein 827) Rattus norvegicus
Analyze
Symbol: Zfp827
Name: zinc finger protein 827
RGD ID: 1560620
Description: Predicted to enable NuRD complex binding activity. Predicted to be involved in several processes, including establishment of protein localization to telomere; negative regulation of shelterin complex assembly; and regulation of DNA-templated transcription. Predicted to be located in chromatin and chromosome, telomeric region. Predicted to be part of ribonucleoprotein complex. Predicted to be active in nucleus. Orthologous to human ZNF827 (zinc finger protein 827); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC291940; RGD1560620; similar to hypothetical protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81945,624,849 - 45,791,739 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1945,614,604 - 45,844,430 (-)EnsemblGRCr8
mRatBN7.21928,720,568 - 28,887,381 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1928,721,021 - 28,887,191 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1935,575,880 - 35,742,477 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01936,229,974 - 36,396,568 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01938,465,230 - 38,632,017 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01932,396,155 - 32,616,648 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1932,401,661 - 32,528,965 (-)Ensemblrn6Rnor6.0
Rnor_5.01943,291,783 - 43,457,610 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41930,559,533 - 30,697,841 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1928,231,627 - 28,244,663 (-)NCBICelera
Celera1928,279,410 - 28,445,969 (-)NCBICelera
Cytogenetic Map19q11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dichloroethane  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
amphetamine  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
chlordecone  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
crocidolite asbestos  (ISO)
Cuprizon  (EXP)
cyclophosphamide  (EXP)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
dimethylarsinous acid  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
gallic acid  (ISO)
iron dichloride  (ISO)
L-methionine  (ISO)
lead diacetate  (ISO)
lenalidomide  (ISO)
Licochalcone B  (ISO)
manganese(II) chloride  (EXP)
methimazole  (EXP)
methotrexate  (ISO)
methoxychlor  (EXP)
N,N-diethyl-m-toluamide  (EXP)
nickel atom  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
pentanal  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
permethrin  (EXP)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
temozolomide  (ISO)
titanium dioxide  (ISO)
triphenyl phosphate  (ISO)
urethane  (ISO)
valproic acid  (ISO)
zinc protoporphyrin  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Zfp827
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81945,624,849 - 45,791,739 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1945,614,604 - 45,844,430 (-)EnsemblGRCr8
mRatBN7.21928,720,568 - 28,887,381 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1928,721,021 - 28,887,191 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1935,575,880 - 35,742,477 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01936,229,974 - 36,396,568 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01938,465,230 - 38,632,017 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01932,396,155 - 32,616,648 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1932,401,661 - 32,528,965 (-)Ensemblrn6Rnor6.0
Rnor_5.01943,291,783 - 43,457,610 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41930,559,533 - 30,697,841 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1928,231,627 - 28,244,663 (-)NCBICelera
Celera1928,279,410 - 28,445,969 (-)NCBICelera
Cytogenetic Map19q11NCBI
ZNF827
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384145,757,627 - 145,938,823 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4145,757,627 - 145,938,823 (-)Ensemblhg38GRCh38
GRCh374146,678,779 - 146,859,975 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364146,901,324 - 147,079,057 (-)NCBIBuild 36Build 36hg18NCBI36
Celera4144,009,499 - 144,187,313 (-)NCBICelera
Cytogenetic Map4q31.21-q31.22NCBI
HuRef4142,410,679 - 142,588,745 (-)NCBIHuRef
CHM1_14146,659,180 - 146,836,920 (-)NCBICHM1_1
T2T-CHM13v2.04149,073,653 - 149,254,873 (-)NCBIT2T-CHM13v2.0
Zfp827
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39879,753,754 - 79,920,397 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl879,755,066 - 79,920,395 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38879,027,486 - 79,193,768 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl879,028,437 - 79,193,766 (+)Ensemblmm10GRCm38
MGSCv37881,552,336 - 81,717,665 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36881,924,183 - 82,089,840 (+)NCBIMGSCv36mm8
Celera883,305,392 - 83,470,870 (+)NCBICelera
Cytogenetic Map8C1NCBI
cM Map837.36NCBI
Znf827
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554281,545,758 - 1,718,779 (-)Ensembl
ChiLan1.0NW_0049554281,545,802 - 1,718,686 (-)NCBIChiLan1.0ChiLan1.0
ZNF827
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23143,631,577 - 143,814,522 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14143,996,526 - 144,177,544 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04138,098,155 - 138,279,102 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14149,756,907 - 149,937,620 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4149,756,907 - 149,937,654 (-)EnsemblpanPan2panpan1.1
ZNF827
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11544,300,109 - 44,469,337 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1544,303,300 - 44,468,680 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1544,691,789 - 44,860,458 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01544,967,563 - 45,136,365 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1544,969,595 - 45,136,601 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11544,240,934 - 44,409,387 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01544,328,123 - 44,496,855 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01544,593,023 - 44,761,671 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Znf827
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530145,845,197 - 46,008,722 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365353,282,586 - 3,447,435 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365353,282,572 - 3,445,277 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF827
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl882,596,659 - 82,783,676 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1882,596,560 - 82,783,691 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2887,915,039 - 88,108,048 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF827
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1792,315,242 - 92,489,741 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl792,315,080 - 92,489,762 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603771,966,803 - 72,141,324 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf827
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248534,630,712 - 4,799,399 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248534,633,005 - 4,799,000 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Znf827
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11720,915,204 - 21,074,807 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Zfp827
1159 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:146
Count of miRNA genes:103
Interacting mature miRNAs:112
Transcripts:ENSRNOT00000015929, ENSRNOT00000059838
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)191922068964220689Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19799775052997750Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)193628974246245Rat
2313395Anxrr26Anxiety related response QTL 26aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)194438513474246245Rat
61328Eae8Experimental allergic encephalomyelitis QTL 84nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)194172060949971820Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)193253961574246245Rat
1558656Prcs1Prostate cancer susceptibility QTL 15prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)193128753251431640Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)193177788874246245Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19799775052997750Rat
1554318Bmd5Bone mineral density QTL 512.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)192318858668188586Rat
1549835Tcas7Tongue tumor susceptibility QTL 70.001tongue integrity trait (VT:0010553)squamous cell carcinoma of the head and neck tumor number (CMO:0001876)194172254674246245Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19219431774246245Rat
1354633Bw28Body weight QTL 286.04body mass (VT:0001259)body weight (CMO:0000012)194072709254856850Rat
61407Scl12Serum cholesterol level QTL 120.001blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)193009938347207961Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19799775052997750Rat
631840Niddm38Non-insulin dependent diabetes mellitus QTL 383.86blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)191032907674246245Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)19574806450748064Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)193236531174246245Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)192409397369093973Rat
2303628Vencon9Ventilatory control QTL 90.005respiration trait (VT:0001943)minute ventilation (CMO:0000132)192318858668188586Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191083361874246245Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19799775052997750Rat
1354607Gmadr1Adrenal mass QTL 15.83adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)194072709254856850Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)192010930665109306Rat
1354600Salc2Saline consumption QTL 29.910.001drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)194072709254856850Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19219431774246245Rat

Markers in Region
RH139997  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21928,765,478 - 28,765,662 (+)MAPPERmRatBN7.2
Rnor_6.01932,441,208 - 32,441,391NCBIRnor6.0
Rnor_5.01943,337,046 - 43,337,229UniSTSRnor5.0
RGSC_v3.41930,603,219 - 30,603,402UniSTSRGSC3.4
Celera1928,272,413 - 28,272,596UniSTS
RH 3.4 Map19216.0UniSTS
Cytogenetic Map19q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001400944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000015929   ⟹   ENSRNOP00000015929
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1945,627,779 - 45,791,462 (-)Ensembl
mRatBN7.2 Ensembl1928,723,519 - 28,870,362 (-)Ensembl
Rnor_6.0 Ensembl1932,401,661 - 32,528,965 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000103444   ⟹   ENSRNOP00000085193
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1945,624,849 - 45,791,462 (-)Ensembl
mRatBN7.2 Ensembl1928,721,021 - 28,887,191 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104001   ⟹   ENSRNOP00000091843
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1945,624,849 - 45,791,462 (-)Ensembl
mRatBN7.2 Ensembl1928,721,021 - 28,887,191 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000117381   ⟹   ENSRNOP00000092352
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1945,627,063 - 45,791,462 (-)Ensembl
mRatBN7.2 Ensembl1928,723,519 - 28,886,857 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000126153   ⟹   ENSRNOP00000106995
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1945,624,849 - 45,844,430 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000136507   ⟹   ENSRNOP00000102237
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1945,624,849 - 45,774,865 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000148138   ⟹   ENSRNOP00000108637
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1945,614,604 - 45,791,462 (-)Ensembl
RefSeq Acc Id: NM_001400944   ⟹   NP_001387873
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81945,624,849 - 45,791,462 (-)NCBI
mRatBN7.21928,720,568 - 28,887,191 (-)NCBI
RefSeq Acc Id: XM_039098166   ⟹   XP_038954094
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81945,624,849 - 45,789,720 (-)NCBI
mRatBN7.21928,720,568 - 28,885,448 (-)NCBI
RefSeq Acc Id: XM_039098168   ⟹   XP_038954096
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81945,628,768 - 45,789,720 (-)NCBI
mRatBN7.21928,724,481 - 28,885,447 (-)NCBI
RefSeq Acc Id: XM_039098170   ⟹   XP_038954098
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81945,628,782 - 45,789,720 (-)NCBI
mRatBN7.21928,724,503 - 28,885,448 (-)NCBI
RefSeq Acc Id: XM_039098171   ⟹   XP_038954099
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81945,628,782 - 45,789,718 (-)NCBI
mRatBN7.21928,724,503 - 28,885,445 (-)NCBI
RefSeq Acc Id: XM_039098172   ⟹   XP_038954100
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81945,627,991 - 45,789,721 (-)NCBI
mRatBN7.21928,724,353 - 28,885,449 (-)NCBI
RefSeq Acc Id: XM_063277880   ⟹   XP_063133950
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81945,624,849 - 45,791,739 (-)NCBI
RefSeq Acc Id: XM_063277881   ⟹   XP_063133951
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81945,624,849 - 45,788,703 (-)NCBI
RefSeq Acc Id: XM_063277882   ⟹   XP_063133952
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81945,624,849 - 45,789,718 (-)NCBI
RefSeq Acc Id: XM_063277884   ⟹   XP_063133954
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81945,624,849 - 45,788,702 (-)NCBI
RefSeq Acc Id: XM_063277885   ⟹   XP_063133955
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81945,624,849 - 45,789,719 (-)NCBI
RefSeq Acc Id: XM_063277886   ⟹   XP_063133956
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81945,624,849 - 45,791,739 (-)NCBI
RefSeq Acc Id: XM_063277887   ⟹   XP_063133957
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81945,624,849 - 45,755,940 (-)NCBI
Ensembl Acc Id: ENSRNOP00000015929   ⟸   ENSRNOT00000015929
RefSeq Acc Id: XP_038954094   ⟸   XM_039098166
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GCK4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954100   ⟸   XM_039098172
- Peptide Label: isoform X9
- UniProtKB: F1LVT1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954096   ⟸   XM_039098168
- Peptide Label: isoform X6
- UniProtKB: F1LVT1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954098   ⟸   XM_039098170
- Peptide Label: isoform X7
- UniProtKB: F1LVT1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954099   ⟸   XM_039098171
- Peptide Label: isoform X8
- UniProtKB: F1LVT1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000091843   ⟸   ENSRNOT00000104001
Ensembl Acc Id: ENSRNOP00000092352   ⟸   ENSRNOT00000117381
Ensembl Acc Id: ENSRNOP00000085193   ⟸   ENSRNOT00000103444
RefSeq Acc Id: NP_001387873   ⟸   NM_001400944
- UniProtKB: A0A8I6AI01 (UniProtKB/TrEMBL),   F1LVT1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133956   ⟸   XM_063277886
- Peptide Label: isoform X11
- UniProtKB: A0A8I6ACV6 (UniProtKB/TrEMBL),   F1LVT1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133950   ⟸   XM_063277880
- Peptide Label: isoform X2
- UniProtKB: A0A8I6GCK4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133955   ⟸   XM_063277885
- Peptide Label: isoform X10
- UniProtKB: F1LVT1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133952   ⟸   XM_063277882
- Peptide Label: isoform X4
- UniProtKB: A0A8I6GCK4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133951   ⟸   XM_063277881
- Peptide Label: isoform X3
- UniProtKB: A0A8I6GCK4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133954   ⟸   XM_063277884
- Peptide Label: isoform X5
- UniProtKB: A0A8I6GCK4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133957   ⟸   XM_063277887
- Peptide Label: isoform X12
Ensembl Acc Id: ENSRNOP00000102237   ⟸   ENSRNOT00000136507
Ensembl Acc Id: ENSRNOP00000106995   ⟸   ENSRNOT00000126153
Ensembl Acc Id: ENSRNOP00000108637   ⟸   ENSRNOT00000148138

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LVT1-F1-model_v2 AlphaFold F1LVT1 1-1065 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560620 AgrOrtholog
BioCyc Gene G2FUF-5943 BioCyc
Ensembl Genes ENSRNOG00000011697 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000015929 ENTREZGENE
  ENSRNOT00000015929.10 UniProtKB/TrEMBL
  ENSRNOT00000103444 ENTREZGENE
  ENSRNOT00000103444.2 UniProtKB/TrEMBL
  ENSRNOT00000104001.2 UniProtKB/TrEMBL
  ENSRNOT00000117381 ENTREZGENE
  ENSRNOT00000117381.2 UniProtKB/TrEMBL
  ENSRNOT00000126153.1 UniProtKB/TrEMBL
  ENSRNOT00000136507.1 UniProtKB/TrEMBL
  ENSRNOT00000148138 ENTREZGENE
  ENSRNOT00000148138.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Zinc_finger/UBP_domain UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene 291940 ENTREZGENE
PANTHER FI01116P-RELATED UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 827 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
PhenoGen Zfp827 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011697 RatGTEx
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A8I6ACV6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AI01 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GCK4 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LAM1_RAT UniProtKB/TrEMBL
  A0ABK0LD94_RAT UniProtKB/TrEMBL
  A0ABK0LXM5_RAT UniProtKB/TrEMBL
  F1LVT1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-04-23 Zfp827  zinc finger protein 827  RGD1560620  similar to hypothetical protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1560620  similar to hypothetical protein   RGD1560620_predicted  similar to hypothetical protein (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1560620_predicted  similar to hypothetical protein (predicted)  LOC291940  similar to hypothetical protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC291940  similar to hypothetical protein      Symbol and Name status set to provisional 70820 PROVISIONAL