Trim24 (tripartite motif-containing 24) - Rat Genome Database

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Gene: Trim24 (tripartite motif-containing 24) Rattus norvegicus
Analyze
Symbol: Trim24
Name: tripartite motif-containing 24
RGD ID: 1560596
Description: Predicted to enable several functions, including estrogen response element binding activity; histone H3K23ac reader activity; and p53 binding activity. Involved in response to peptide hormone. Predicted to be located in chromatin; cytoplasm; and male germ cell nucleus. Predicted to be active in chromatin. Orthologous to human TRIM24 (tripartite motif containing 24); PARTICIPATES IN histone modification pathway; retinoic acid signaling pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Ab2-427; LOC500084; transcription intermediary factor 1-alpha
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8467,534,240 - 67,659,014 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl467,534,335 - 67,684,226 (+)EnsemblGRCr8
mRatBN7.2466,567,342 - 66,692,029 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl466,566,686 - 66,717,241 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx471,503,268 - 71,628,355 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0467,424,359 - 67,549,447 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0465,822,390 - 65,947,419 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0465,632,278 - 65,684,746 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl465,637,407 - 65,684,743 (+)Ensemblrn6Rnor6.0
Rnor_5.0465,451,992 - 65,504,097 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4465,490,076 - 65,543,305 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera461,686,473 - 61,738,396 (+)NCBICelera
Cytogenetic Map4q23NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (EXP)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (EXP,ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxynon-2-enal  (ISO)
8-Br-cAMP  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
bisphenol F  (ISO)
bromobenzene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
calcitriol  (ISO)
cannabidiol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibenz[a,h]anthracene  (ISO)
dichloroacetic acid  (ISO)
diethylstilbestrol  (ISO)
dimethyl sulfoxide  (ISO)
disodium selenite  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
entinostat  (ISO)
ethyl methanesulfonate  (ISO)
fenofibrate  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
indometacin  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
nevirapine  (EXP)
Nivalenol  (ISO)
ochratoxin A  (ISO)
oxaliplatin  (EXP)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenformin  (EXP)
phenobarbital  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
propiconazole  (ISO)
quercetin  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
trichloroethene  (EXP)
triphenyl phosphate  (EXP)
triptonide  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatin  (IBA)
cytoplasm  (IEA,ISO)
euchromatin  (IEA,ISO)
nuclear lumen  (IEA)
nucleoplasm  (IEA,ISO)
nucleus  (IEA,ISO)
perichromatin fibrils  (IEA,ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. The transcription coactivator HTIF1 and a related protein are fused to the RET receptor tyrosine kinase in childhood papillary thyroid carcinomas. Klugbauer S and Rabes HM, Oncogene. 1999 Jul 29;18(30):4388-93.
3. Characterization of three growth hormone-responsive transcription factors preferentially expressed in adult female liver. Laz EV, etal., Endocrinology. 2007 Jul;148(7):3327-37. Epub 2007 Apr 5.
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. Readout of epigenetic modifications. Patel DJ and Wang Z, Annu Rev Biochem. 2013;82:81-118. doi: 10.1146/annurev-biochem-072711-165700.
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:7744009   PMID:10318760   PMID:10525195   PMID:10562550   PMID:11331580   PMID:12477932   PMID:15322135   PMID:18026104   PMID:18287084   PMID:19556538   PMID:19909775   PMID:21164480  
PMID:22082260  


Genomics

Comparative Map Data
Trim24
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8467,534,240 - 67,659,014 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl467,534,335 - 67,684,226 (+)EnsemblGRCr8
mRatBN7.2466,567,342 - 66,692,029 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl466,566,686 - 66,717,241 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx471,503,268 - 71,628,355 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0467,424,359 - 67,549,447 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0465,822,390 - 65,947,419 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0465,632,278 - 65,684,746 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl465,637,407 - 65,684,743 (+)Ensemblrn6Rnor6.0
Rnor_5.0465,451,992 - 65,504,097 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4465,490,076 - 65,543,305 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera461,686,473 - 61,738,396 (+)NCBICelera
Cytogenetic Map4q23NCBI
TRIM24
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387138,460,259 - 138,589,996 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7138,460,210 - 138,589,996 (+)Ensemblhg38GRCh38
GRCh377138,145,004 - 138,274,741 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367137,795,619 - 137,920,873 (+)NCBIBuild 36Build 36hg18NCBI36
Build 347137,602,333 - 137,727,585NCBI
Celera7132,883,742 - 133,008,986 (+)NCBICelera
Cytogenetic Map7q33-q34NCBI
HuRef7132,454,177 - 132,579,352 (+)NCBIHuRef
CHM1_17138,078,355 - 138,203,624 (+)NCBICHM1_1
T2T-CHM13v2.07139,769,953 - 139,899,677 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27137,490,163 - 137,615,364 (+)NCBI
Trim24
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39637,846,816 - 37,945,380 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl637,847,746 - 37,943,231 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38637,870,811 - 37,968,445 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl637,870,811 - 37,966,296 (+)Ensemblmm10GRCm38
MGSCv37637,820,811 - 37,916,292 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36637,800,419 - 37,895,900 (+)NCBIMGSCv36mm8
Celera637,857,341 - 37,952,713 (+)NCBICelera
Cytogenetic Map6B1NCBI
cM Map617.07NCBI
Trim24
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554944,308,924 - 4,370,160 (-)Ensembl
ChiLan1.0NW_0049554944,308,924 - 4,421,588 (-)NCBIChiLan1.0ChiLan1.0
TRIM24
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26175,275,141 - 175,401,874 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1727,285,396 - 27,417,184 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07130,420,334 - 130,547,489 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17142,909,003 - 143,040,956 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7142,909,009 - 143,036,526 (+)EnsemblpanPan2panpan1.1
TRIM24
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11610,033,993 - 10,133,450 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1610,034,390 - 10,133,435 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1610,876,971 - 10,969,650 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0169,956,906 - 10,056,315 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl169,956,667 - 10,056,711 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1169,904,755 - 10,004,003 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0169,751,583 - 9,856,545 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0169,822,026 - 9,921,548 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Trim24
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511816,256,794 - 16,356,054 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365922,863,743 - 2,963,977 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365922,902,805 - 2,962,602 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIM24
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1811,055,213 - 11,151,404 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11811,055,211 - 11,151,755 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21811,518,577 - 11,527,423 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103226979
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121107,166,180 - 107,291,897 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21107,166,395 - 107,295,736 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660724,021,573 - 4,144,426 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trim24
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476518,966,663 - 19,079,857 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Trim24
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v16101,826,539 - 101,944,964 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Trim24
434 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:37
Count of miRNA genes:36
Interacting mature miRNAs:37
Transcripts:ENSRNOT00000047954
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
5685012Bmd87Bone mineral density QTL 875.1tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)43511329080113290Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)439431983123203361Rat
1549843Bw53Body weight QTL 530.0001body mass (VT:0001259)body weight gain (CMO:0000420)459753119104753119Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44140057786400577Rat
5685009Bmd86Bone mineral density QTL 863.7tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)457613242102613242Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44442502489425024Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)427730518170099664Rat
1331807Rf31Renal function QTL 312.988urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)44049044275726188Rat
634311Sach7Saccharin preference QTL 7taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)45807987582597589Rat
1358363Sradr3Stress Responsive Adrenal Weight QTL 36.19adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)458817672103817672Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)426234499134199155Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41170660492690519Rat
6478772Anxrr49Anxiety related response QTL 490.15488defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)464084079109084079Rat
61336Bp21Blood pressure QTL 214.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45808014680212111Rat
2312569Pur19Proteinuria QTL 193.40.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)459836842104836842Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)43726957782269577Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)445429897149763204Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)46104105794638356Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)427862204126119996Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45889999148002343Rat
61475Aia2Adjuvant induced arthritis QTL 25.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)44047145375939996Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)44140060386400603Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264174095838Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)465060960127749483Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)43044896182336920Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)445429709157555683Rat
631651Bp124Blood pressure QTL 1243arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)464209744109209744Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)463245026129846354Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
1558651Swd3Spike wave discharge measurement QTL 34.620.000024brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)44140057786400577Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)457664252127749483Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)445429897149763204Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)451085655113588029Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)465495851159259805Rat
631546Bp86Blood pressure QTL 863.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45807987592690793Rat
6478743Anxrr40Anxiety related response QTL 400.83076defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)464084079109084079Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)440490442117737312Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)457613339151163960Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)463224393108224393Rat
7394826Bw126Body weight QTL 1260.002body mass (VT:0001259)body weight gain (CMO:0000420)46390045888813920Rat
4889969Bss96Bone structure and strength QTL 964.9tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)457613242102613242Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)433538597116185060Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
631671Iddm11Insulin dependent diabetes mellitus QTL 113.60.0012blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)45960331980216952Rat
4889972Bss97Bone structure and strength QTL 975.6tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)457613242102613242Rat
6478684Anxrr30Anxiety related response QTL 300.00087defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)464084079109084079Rat

Markers in Region
D4Rat96  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8467,576,349 - 67,576,447 (+)Marker Load Pipeline
mRatBN7.2466,609,358 - 66,609,456 (+)MAPPERmRatBN7.2
Rnor_6.0465,577,152 - 65,577,249NCBIRnor6.0
Rnor_5.0465,397,099 - 65,397,196UniSTSRnor5.0
RGSC_v3.4465,434,710 - 65,434,807UniSTSRGSC3.4
RGSC_v3.4465,434,709 - 65,434,807RGDRGSC3.4
Celera461,631,014 - 61,631,111UniSTS
RGSC_v3.1465,710,840 - 65,710,937RGD
RH 3.4 Map4417.3UniSTS
RH 3.4 Map4417.3RGD
SHRSP x BN Map434.0RGD
SHRSP x BN Map434.0UniSTS
Cytogenetic Map4q22UniSTS
RH138421  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2466,694,940 - 66,695,178 (+)MAPPERmRatBN7.2
Rnor_6.0465,662,448 - 65,662,685NCBIRnor6.0
Rnor_5.0465,482,162 - 65,482,399UniSTSRnor5.0
RGSC_v3.4465,521,256 - 65,521,493UniSTSRGSC3.4
Celera461,716,085 - 61,716,322UniSTS
RH 3.4 Map4415.8UniSTS
Cytogenetic Map4q22UniSTS
BE117232  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2466,664,336 - 66,664,508 (+)MAPPERmRatBN7.2
Rnor_6.0465,631,751 - 65,631,922NCBIRnor6.0
Rnor_5.0465,451,465 - 65,451,636UniSTSRnor5.0
RGSC_v3.4465,489,549 - 65,489,720UniSTSRGSC3.4
Celera461,685,946 - 61,686,117UniSTS
RH 3.4 Map4418.0UniSTS
Cytogenetic Map4q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000047954   ⟹   ENSRNOP00000050587
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl467,636,980 - 67,684,226 (+)Ensembl
mRatBN7.2 Ensembl466,646,056 - 66,717,241 (+)Ensembl
Rnor_6.0 Ensembl465,637,407 - 65,684,743 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000099016   ⟹   ENSRNOP00000095168
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl467,534,439 - 67,659,005 (+)Ensembl
mRatBN7.2 Ensembl466,646,056 - 66,717,241 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000113281   ⟹   ENSRNOP00000094653
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl467,534,335 - 67,659,005 (+)Ensembl
mRatBN7.2 Ensembl466,566,686 - 66,692,029 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000129068   ⟹   ENSRNOP00000110294
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl467,534,335 - 67,659,424 (+)Ensembl
RefSeq Acc Id: NM_001395753   ⟹   NP_001382682
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8467,534,335 - 67,659,014 (+)NCBI
mRatBN7.2466,567,342 - 66,692,029 (+)NCBI
RefSeq Acc Id: XM_063286502   ⟹   XP_063142572
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8467,534,240 - 67,659,014 (+)NCBI
RefSeq Acc Id: XM_063286503   ⟹   XP_063142573
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8467,575,429 - 67,659,014 (+)NCBI
RefSeq Acc Id: XM_063286504   ⟹   XP_063142574
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8467,575,429 - 67,659,014 (+)NCBI
RefSeq Acc Id: XM_063286505   ⟹   XP_063142575
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8467,581,257 - 67,659,014 (+)NCBI
RefSeq Acc Id: XR_010065691
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8467,534,240 - 67,657,491 (+)NCBI
Ensembl Acc Id: ENSRNOP00000050587   ⟸   ENSRNOT00000047954
Ensembl Acc Id: ENSRNOP00000095168   ⟸   ENSRNOT00000099016
Ensembl Acc Id: ENSRNOP00000094653   ⟸   ENSRNOT00000113281
RefSeq Acc Id: NP_001382682   ⟸   NM_001395753
- UniProtKB: A0A8I6AI80 (UniProtKB/TrEMBL),   A6IEQ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142572   ⟸   XM_063286502
- Peptide Label: isoform X1
- UniProtKB: A6IEQ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142574   ⟸   XM_063286504
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063142573   ⟸   XM_063286503
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063142575   ⟸   XM_063286505
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000110294   ⟸   ENSRNOT00000129068
Protein Domains
B box-type   Bromo   PHD-type   RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F7ESX8-F1-model_v2 AlphaFold F7ESX8 1-863 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560596 AgrOrtholog
BioCyc Gene G2FUF-45220 BioCyc
Ensembl Genes ENSRNOG00000013251 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000047954.6 UniProtKB/TrEMBL
  ENSRNOT00000099016.2 UniProtKB/TrEMBL
  ENSRNOT00000113281 ENTREZGENE
  ENSRNOT00000113281.2 UniProtKB/TrEMBL
  ENSRNOT00000129068.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.920.10 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7459236 IMAGE-MGC_LOAD
InterPro Bbox_C UniProtKB/TrEMBL
  Bromodomain UniProtKB/TrEMBL
  Bromodomain-like_sf UniProtKB/TrEMBL
  Bromodomain_CS UniProtKB/TrEMBL
  Zinc_finger_PHD-type_CS UniProtKB/TrEMBL
  Znf_B-box UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_PHD UniProtKB/TrEMBL
  Znf_PHD-finger UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
MGC_CLONE MGC:125255 IMAGE-MGC_LOAD
NCBI Gene 500084 ENTREZGENE
PANTHER TRANSCRIPTION INTERMEDIARY FACTOR UniProtKB/TrEMBL
  TRANSCRIPTION INTERMEDIARY FACTOR 1-ALPHA UniProtKB/TrEMBL
Pfam Bromodomain UniProtKB/TrEMBL
  PHD UniProtKB/TrEMBL
  zf-B_box UniProtKB/TrEMBL
PhenoGen Trim24 PhenoGen
PRINTS BROMODOMAIN UniProtKB/TrEMBL
PROSITE BROMODOMAIN_1 UniProtKB/TrEMBL
  BROMODOMAIN_2 UniProtKB/TrEMBL
  ZF_BBOX UniProtKB/TrEMBL
  ZF_PHD_1 UniProtKB/TrEMBL
  ZF_PHD_2 UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000013251 RatGTEx
SMART BBC UniProtKB/TrEMBL
  BBOX UniProtKB/TrEMBL
  BROMO UniProtKB/TrEMBL
  PHD UniProtKB/TrEMBL
  RING UniProtKB/TrEMBL
Superfamily-SCOP B-box zinc-binding domain UniProtKB/TrEMBL
  RING/U-box UniProtKB/TrEMBL
  SSF47370 UniProtKB/TrEMBL
  SSF57903 UniProtKB/TrEMBL
UniProt A0A8I6AI80 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6APV0_RAT UniProtKB/TrEMBL
  A0ABK0LVJ7_RAT UniProtKB/TrEMBL
  A6IEQ8 ENTREZGENE, UniProtKB/TrEMBL
  A6IEQ9 ENTREZGENE, UniProtKB/TrEMBL
  Q32PZ6_RAT UniProtKB/TrEMBL
  Q7TP39_RAT UniProtKB/TrEMBL
UniProt Secondary F7ESX8 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2007-02-09 Trim24  tripartite motif-containing 24  LOC500084  Ab2-427  Symbol and Name updated to reflect Human and Mouse nomenclature 1299863 PROVISIONAL
2006-02-09 LOC500084  Ab2-427      Symbol and Name status set to provisional 70820 PROVISIONAL