Cd27 (CD27 molecule) - Rat Genome Database

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Gene: Cd27 (CD27 molecule) Rattus norvegicus
Analyze
Symbol: Cd27
Name: CD27 molecule
RGD ID: 1560499
Description: Predicted to enable cysteine-type endopeptidase inhibitor activity involved in apoptotic process and transmembrane signaling receptor activity. Involved in response to ethanol. Predicted to be located in external side of plasma membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in lymphoproliferative syndrome 2. Orthologous to human CD27 (CD27 molecule); PARTICIPATES IN cytokine mediated signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; alpha-Zearalanol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: CD antigen 27; CD27 antigen; MGC112688; similar to CD27 antigen precursor - mouse; Tnfrsf7; tumor necrosis factor receptor superfamily, member 7
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84159,716,932 - 159,721,823 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4159,716,935 - 159,721,823 (-)EnsemblGRCr8
mRatBN7.24158,030,700 - 158,035,862 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4158,030,703 - 158,035,592 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4164,259,921 - 164,264,814 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04160,042,837 - 160,047,730 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04158,681,915 - 158,686,828 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04157,744,881 - 157,751,609 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4157,744,882 - 157,750,088 (-)Ensemblrn6Rnor6.0
Rnor_5.04224,761,677 - 224,768,402 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44161,351,797 - 161,356,688 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4146,767,794 - 146,772,685 (-)NCBICelera
Cytogenetic Map4q42NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
3-chloropropane-1,2-diol  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acetamide  (EXP)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
amphetamine  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bortezomib  (ISO)
buta-1,3-diene  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium dichloride  (ISO)
CGP 52608  (ISO)
cisplatin  (ISO)
cyclophosphamide  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
diethylstilbestrol  (ISO)
ethanol  (EXP)
folic acid  (ISO)
genistein  (ISO)
hydroxychloroquine  (ISO)
isoflurane  (EXP)
lead diacetate  (ISO)
Licochalcone B  (ISO)
methotrexate  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
nickel atom  (ISO)
niclosamide  (ISO)
nitrates  (ISO)
nitrofen  (EXP)
ozone  (ISO)
p-menthan-3-ol  (ISO)
paracetamol  (EXP)
paraquat  (ISO)
pentobarbital  (EXP)
perfluorooctanoic acid  (EXP)
phenobarbital  (ISO)
PhIP  (ISO)
pirinixic acid  (ISO)
poly(propylene imine) macromolecule  (ISO)
pyrethrins  (ISO)
silicon dioxide  (ISO)
simvastatin  (ISO)
sulfasalazine  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
Tributyltin oxide  (ISO)
trichloroethene  (EXP,ISO)
triptonide  (ISO)
troglitazone  (ISO)
trovafloxacin  (ISO)
valproic acid  (ISO)
VX nerve agent  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. Expression of CD27 and ischemia/reperfusion-induced expression of its ligand Siva in rat kidneys. Padanilam BJ, etal., Kidney Int. 1998 Dec;54(6):1967-75.
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Comprehensive gene review and curation RGD comprehensive gene curation
9. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
10. Effect of tea polyphenol on cytokine gene expression in rats with alcoholic liver disease. Zhang XG, etal., Hepatobiliary Pancreat Dis Int. 2006 May;5(2):268-72.
Additional References at PubMed
PMID:7737295   PMID:9177220   PMID:9692890   PMID:9833765   PMID:10857786   PMID:11001927   PMID:12324477   PMID:21508411   PMID:21737317   PMID:23376485  


Genomics

Comparative Map Data
Cd27
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84159,716,932 - 159,721,823 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4159,716,935 - 159,721,823 (-)EnsemblGRCr8
mRatBN7.24158,030,700 - 158,035,862 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4158,030,703 - 158,035,592 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4164,259,921 - 164,264,814 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04160,042,837 - 160,047,730 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04158,681,915 - 158,686,828 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04157,744,881 - 157,751,609 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4157,744,882 - 157,750,088 (-)Ensemblrn6Rnor6.0
Rnor_5.04224,761,677 - 224,768,402 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44161,351,797 - 161,356,688 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4146,767,794 - 146,772,685 (-)NCBICelera
Cytogenetic Map4q42NCBI
CD27
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38126,443,892 - 6,451,713 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl126,444,941 - 6,451,718 (+)Ensemblhg38GRCh38
GRCh37126,553,058 - 6,560,879 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36126,424,312 - 6,431,145 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34126,424,326 - 6,431,144NCBI
Celera128,170,942 - 8,177,775 (+)NCBICelera
Cytogenetic Map12p13.31NCBI
HuRef126,408,240 - 6,415,073 (+)NCBIHuRef
CHM1_1126,552,929 - 6,559,762 (+)NCBICHM1_1
T2T-CHM13v2.0126,454,276 - 6,462,105 (+)NCBIT2T-CHM13v2.0
Cd27
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396125,209,583 - 125,214,014 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6125,209,585 - 125,213,973 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm386125,232,620 - 125,237,136 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6125,232,622 - 125,237,010 (-)Ensemblmm10GRCm38
MGSCv376125,182,640 - 125,187,045 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv366125,198,243 - 125,202,629 (-)NCBIMGSCv36mm8
Celera6126,902,417 - 126,906,796 (-)NCBICelera
Cytogenetic Map6F3NCBI
cM Map659.32NCBI
Cd27
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554134,103,126 - 4,107,420 (+)Ensembl
ChiLan1.0NW_0049554134,102,740 - 4,107,739 (+)NCBIChiLan1.0ChiLan1.0
CD27
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21012,005,098 - 12,012,787 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11212,001,856 - 12,009,613 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0126,575,104 - 6,582,127 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1126,492,119 - 6,499,427 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl126,492,119 - 6,499,427 (+)EnsemblpanPan2panpan1.1
CD27
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12738,534,704 - 38,537,806 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2738,534,707 - 38,537,604 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha278,078,739 - 8,081,962 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02738,888,425 - 38,891,647 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2738,888,428 - 38,891,506 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12738,761,199 - 38,764,421 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02738,802,623 - 38,805,845 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0277,557,635 - 7,560,858 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cd27
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945102,644,557 - 102,651,329 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367091,312,448 - 1,317,378 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367091,312,434 - 1,317,592 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD27
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl564,196,994 - 64,202,613 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1564,197,594 - 64,202,236 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2566,658,752 - 66,725,927 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CD27
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1116,493,414 - 6,500,062 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl116,493,542 - 6,499,738 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660631,731,987 - 1,738,679 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cd27
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248603,199,493 - 3,203,683 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Cd27
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1622,666,835 - 22,671,868 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cd27
44 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:77
Count of miRNA genes:67
Interacting mature miRNAs:72
Transcripts:ENSRNOT00000038023
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4146370897184426481Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4134095016179095016Rat
1582237Kidm34Kidney mass QTL 3440.0001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)4149763204169799698Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4146370897184426481Rat
6478757Anxrr44Anxiety related response QTL 440.01087locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
1358364Sradr4Stress Responsive Adrenal Weight QTL 44.92adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)4131384565176384565Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)427730518170099664Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4123870974168870974Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4117559384162559384Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4140059299181024663Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4157292416184426481Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)494638356168870820Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4106848959168870974Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4127263297172263297Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4126334185171334185Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4147299608184426481Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
6478782Anxrr52Anxiety related response QTL 520.02091locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
631511Pia7Pristane induced arthritis QTL 74.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4123870974168870974Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4124700988169700988Rat
6478720Alc23Alcohol consumption QTL 230.00509drinking behavior trait (VT:0001422)ethanol drink intake rate to body weight ratio (CMO:0001616)4155834926184426481Rat
6478785Anxrr53Anxiety related response QTL 530.01397locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264174095838Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)4100752691179366077Rat
1581566Eae21Experimental allergic encephalomyelitis QTL 216.2body mass (VT:0001259)maximum body weight loss to initial body weight ratio (CMO:0001400)4137447185182447185Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4137430611182430611Rat
6478728Anxrr36Anxiety related response QTL 360.01061locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)486709649168870974Rat
61422Cia13Collagen induced arthritis QTL 134.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4134199006168870974Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4148121375176967367Rat
6478733Anxrr37Anxiety related response QTL 370.00095locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
737978Pia23Pristane induced arthritis QTL 235.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4123870974168870974Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
6478737Anxrr38Anxiety related response QTL 380.00159locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4116184844161184844Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
12798525Anxrr57Anxiety related response QTL 573.210.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4148834094168870974Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
12 12 44 99 83 82 51 92 51 6 310 169 11 71 70 74 31 3 3

Sequence


Ensembl Acc Id: ENSRNOT00000038023   ⟹   ENSRNOP00000029803
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4159,716,935 - 159,721,823 (-)Ensembl
mRatBN7.2 Ensembl4158,030,703 - 158,035,592 (-)Ensembl
Rnor_6.0 Ensembl4157,744,882 - 157,750,088 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000101644   ⟹   ENSRNOP00000077907
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4159,716,935 - 159,721,760 (-)Ensembl
mRatBN7.2 Ensembl4158,030,703 - 158,035,529 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000149633   ⟹   ENSRNOP00000103817
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4159,716,935 - 159,721,823 (-)Ensembl
RefSeq Acc Id: NM_001024335   ⟹   NP_001019506
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84159,716,932 - 159,721,823 (-)NCBI
mRatBN7.24158,030,700 - 158,035,592 (-)NCBI
Rnor_6.04157,744,881 - 157,750,088 (-)NCBI
Rnor_5.04224,761,677 - 224,768,402 (-)NCBI
RGSC_v3.44161,351,797 - 161,356,688 (-)RGD
Celera4146,767,794 - 146,772,685 (-)RGD
Sequence:
RefSeq Acc Id: XM_039108212   ⟹   XP_038964140
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84159,716,932 - 159,721,760 (-)NCBI
mRatBN7.24158,031,047 - 158,035,862 (-)NCBI
RefSeq Acc Id: NP_001019506   ⟸   NM_001024335
- Peptide Label: precursor
- UniProtKB: Q501W2 (UniProtKB/TrEMBL),   A6ILT4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000029803   ⟸   ENSRNOT00000038023
RefSeq Acc Id: XP_038964140   ⟸   XM_039108212
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000077907   ⟸   ENSRNOT00000101644
Ensembl Acc Id: ENSRNOP00000103817   ⟸   ENSRNOT00000149633
Protein Domains
TNFR-Cys

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q501W2-F1-model_v2 AlphaFold Q501W2 1-251 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693409
Promoter ID:EPDNEW_R3934
Type:initiation region
Name:Cd27_1
Description:CD27 molecule
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04157,750,098 - 157,750,158EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560499 AgrOrtholog
BioCyc Gene G2FUF-43000 BioCyc
Ensembl Genes ENSRNOG00000027466 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000038023.6 UniProtKB/TrEMBL
  ENSRNOT00000101644.2 UniProtKB/TrEMBL
  ENSRNOT00000149633 ENTREZGENE
  ENSRNOT00000149633.1 UniProtKB/TrEMBL
Gene3D-CATH Tumor Necrosis Factor Receptor, subunit A, domain 2 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7389613 IMAGE-MGC_LOAD
InterPro CD27_receptor UniProtKB/TrEMBL
  TNFR_7 UniProtKB/TrEMBL
  TNFR_Cys_rich_reg UniProtKB/TrEMBL
  TNFRSF7_N UniProtKB/TrEMBL
KEGG Report rno:500318 UniProtKB/TrEMBL
MGC_CLONE MGC:112688 IMAGE-MGC_LOAD
NCBI Gene 500318 ENTREZGENE
PANTHER CD27 UniProtKB/TrEMBL
  CD27 ANTIGEN UniProtKB/TrEMBL
Pfam TNFR_c6 UniProtKB/TrEMBL
PhenoGen Cd27 PhenoGen
PRINTS TNFACTORR7 UniProtKB/TrEMBL
PROSITE TNFR_NGFR_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000027466 RatGTEx
SMART TNFR UniProtKB/TrEMBL
Superfamily-SCOP TNF receptor-like UniProtKB/TrEMBL
UniProt A0A8A1UEA0_RAT UniProtKB/TrEMBL
  A0A8I5Y9T6_RAT UniProtKB/TrEMBL
  A0ABK0LHI6_RAT UniProtKB/TrEMBL
  A6ILT4 ENTREZGENE, UniProtKB/TrEMBL
  F7FDI3_RAT UniProtKB/TrEMBL
  Q501W2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2009-06-15 Cd27  CD27 molecule  Tnfrsf7  tumor necrosis factor receptor superfamily, member 7  Data merged from RGD:61319 1643240 APPROVED
2008-06-27 Cd27  CD27 molecule  Cd27  CD27 antigen  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 Cd27  CD27 antigen  MGC112688  similar to CD27 antigen precursor - mouse  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 MGC112688  similar to CD27 antigen precursor - mouse      Symbol and Name status set to provisional 70820 PROVISIONAL
2002-06-10 Tnfrsf7        Symbol and Name status set to approved 70586 APPROVED