Rab32 (RAB32, member RAS oncogene family) - Rat Genome Database

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Gene: Rab32 (RAB32, member RAS oncogene family) Rattus norvegicus
Analyze
Symbol: Rab32
Name: RAB32, member RAS oncogene family
RGD ID: 1559997
Description: Orthologous to human RAB32 (RAB32, member RAS oncogene family); INTERACTS WITH 1,2-dimethylhydrazine; 1-benzylpiperazine; 1-naphthyl isothiocyanate.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC365042; ras-related protein Rab-32; RGD1559997; similar to RAB32
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr816,766,448 - 6,781,258 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl16,766,455 - 6,781,258 (-)EnsemblGRCr8
mRatBN7.214,946,193 - 4,961,003 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl14,945,036 - 4,960,934 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx14,623,280 - 4,644,402 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0110,623,631 - 10,644,753 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.014,905,472 - 4,926,595 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.014,638,663 - 4,653,220 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14,637,491 - 4,653,210 (-)Ensemblrn6Rnor6.0
Rnor_5.016,299,748 - 6,314,539 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.415,203,908 - 5,218,416 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera13,479,984 - 3,494,673 (-)NCBICelera
Cytogenetic Map1p13NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (EXP,ISO)
1-benzylpiperazine  (EXP)
1-chloro-2,4-dinitrobenzene  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-amino-2-deoxy-D-glucopyranose  (ISO)
2-hydroxypropanoic acid  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
4-hydroxyphenyl retinamide  (ISO)
acetamide  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
aldehydo-D-glucosamine  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
atrazine  (EXP,ISO)
benzo[a]pyrene  (ISO)
beta-D-glucosamine  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
dextran sulfate  (ISO)
dibutyl phthalate  (EXP)
doxorubicin  (ISO)
endosulfan  (EXP)
Enterolactone  (ISO)
Evodiamine  (ISO)
fluvastatin  (ISO)
folic acid  (ISO)
FR900359  (ISO)
fragrance  (ISO)
furan  (EXP)
hydrogen peroxide  (ISO)
ivermectin  (ISO)
leflunomide  (EXP)
LY294002  (ISO)
methylmercury chloride  (ISO)
N-methyl-4-phenylpyridinium  (EXP,ISO)
N-nitrosodimethylamine  (EXP)
nickel atom  (ISO)
nickel sulfate  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
phenobarbital  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
testosterone  (EXP,ISO)
tetrachloromethane  (ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichloroethene  (EXP)
trovafloxacin  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:18614015   PMID:19717423   PMID:21255211   PMID:21808068   PMID:22511774   PMID:23084991   PMID:25767741   PMID:26620560   PMID:38388913  


Genomics

Comparative Map Data
Rab32
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr816,766,448 - 6,781,258 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl16,766,455 - 6,781,258 (-)EnsemblGRCr8
mRatBN7.214,946,193 - 4,961,003 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl14,945,036 - 4,960,934 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx14,623,280 - 4,644,402 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0110,623,631 - 10,644,753 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.014,905,472 - 4,926,595 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.014,638,663 - 4,653,220 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14,637,491 - 4,653,210 (-)Ensemblrn6Rnor6.0
Rnor_5.016,299,748 - 6,314,539 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.415,203,908 - 5,218,416 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera13,479,984 - 3,494,673 (-)NCBICelera
Cytogenetic Map1p13NCBI
RAB32
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386146,543,833 - 146,554,953 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6146,543,825 - 146,554,964 (+)Ensemblhg38GRCh38
GRCh376146,864,969 - 146,876,089 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366146,906,521 - 146,917,782 (+)NCBIBuild 36Build 36hg18NCBI36
Build 346146,906,520 - 146,917,779NCBI
Celera6147,605,264 - 147,616,521 (+)NCBICelera
Cytogenetic Map6q24.3NCBI
HuRef6144,428,711 - 144,439,665 (+)NCBIHuRef
CHM1_16147,128,062 - 147,139,320 (+)NCBICHM1_1
T2T-CHM13v2.06147,737,054 - 147,748,175 (+)NCBIT2T-CHM13v2.0
Rab32
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391010,420,783 - 10,433,951 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1010,420,746 - 10,434,009 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381010,545,039 - 10,558,207 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1010,545,002 - 10,558,265 (-)Ensemblmm10GRCm38
MGSCv371010,264,837 - 10,278,005 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361010,235,229 - 10,248,397 (-)NCBIMGSCv36mm8
Celera1010,440,276 - 10,453,408 (-)NCBICelera
Cytogenetic Map10A1NCBI
cM Map103.44NCBI
Rab32
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543614,171,123 - 14,177,577 (-)Ensembl
ChiLan1.0NW_00495543614,171,123 - 14,177,255 (-)NCBIChiLan1.0ChiLan1.0
RAB32
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25166,541,048 - 166,561,393 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16164,438,382 - 164,453,907 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06144,339,323 - 144,354,885 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
RAB32
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1137,706,809 - 37,719,044 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl137,712,142 - 37,718,266 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha138,588,880 - 38,611,342 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0137,866,146 - 37,889,054 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl137,865,534 - 37,889,049 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1137,743,864 - 37,766,334 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0137,615,197 - 37,637,672 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0137,945,159 - 37,967,854 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rab32
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946132,783,627 - 132,799,818 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648935,619 - 51,472 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648935,620 - 51,809 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB32
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl119,075,271 - 19,097,870 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1119,076,301 - 19,097,647 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2121,320,352 - 21,341,852 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAB32
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11325,265,831 - 25,281,106 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666040201,227,806 - 201,242,889 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab32
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247537,900,267 - 7,917,854 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247537,900,027 - 7,917,944 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Rab32
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12226,591,376 - 226,607,619 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rab32
115 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:616
Count of miRNA genes:274
Interacting mature miRNAs:352
Transcripts:ENSRNOT00000019121
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1126564886Rat
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1529322934184556Rat
70179Xhs2X-ray hypersensitivity QTL 23.2intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)1143965634Rat
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1126564886Rat
2317755Glom22Glomerulus QTL 223.8urine protein amount (VT:0005160)urine protein level (CMO:0000591)1134184556Rat
1300170Rf6Renal function QTL 63.14renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)1128483164Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1529322934184556Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1529322934184556Rat

Markers in Region
RH136840  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.214,946,254 - 4,946,390 (+)MAPPERmRatBN7.2
Rnor_6.014,638,725 - 4,638,860NCBIRnor6.0
Rnor_5.016,299,810 - 6,299,945UniSTSRnor5.0
RGSC_v3.415,203,970 - 5,204,105UniSTSRGSC3.4
Celera13,480,046 - 3,480,181UniSTS
Cytogenetic Map1p13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 92 59 6 356 192 11 141 81 92 31 15 15

Sequence


Ensembl Acc Id: ENSRNOT00000019121   ⟹   ENSRNOP00000019121
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl14,945,036 - 4,960,934 (-)Ensembl
Rnor_6.0 Ensembl14,637,491 - 4,653,210 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000159300   ⟹   ENSRNOP00000102811
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl16,766,455 - 6,781,258 (-)Ensembl
RefSeq Acc Id: NM_001108902   ⟹   NP_001102372
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr816,766,448 - 6,781,258 (-)NCBI
mRatBN7.214,946,193 - 4,961,003 (-)NCBI
Rnor_6.014,638,663 - 4,653,220 (-)NCBI
Rnor_5.016,299,748 - 6,314,539 (-)NCBI
RGSC_v3.415,203,908 - 5,218,416 (-)RGD
Celera13,479,984 - 3,494,673 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001102372 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL93708 (Get FASTA)   NCBI Sequence Viewer  
  EDL93709 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000102811
  ENSRNOP00000102811.1
RefSeq Acc Id: NP_001102372   ⟸   NM_001108902
- UniProtKB: A6JP36 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000019121   ⟸   ENSRNOT00000019121
Ensembl Acc Id: ENSRNOP00000102811   ⟸   ENSRNOT00000159300

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4AEG2-F1-model_v2 AlphaFold D4AEG2 1-223 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689487
Promoter ID:EPDNEW_R12
Type:initiation region
Name:Rab32_1
Description:RAB32, member RAS oncogene family
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.014,653,163 - 4,653,223EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1559997 AgrOrtholog
BioCyc Gene G2FUF-62413 BioCyc
Ensembl Genes ENSRNOG00000014258 Ensembl
  ENSRNOG00000086137 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000159300 ENTREZGENE
  ENSRNOT00000159300.1 UniProtKB/TrEMBL
Gene3D-CATH P-loop containing nucleotide triphosphate hydrolases UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Rab29/Rab38/Rab32 UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase UniProtKB/TrEMBL
KEGG Report rno:365042 UniProtKB/TrEMBL
NCBI Gene 365042 ENTREZGENE
PANTHER RAB FAMILY UniProtKB/TrEMBL
  RAS-RELATED PROTEIN RAB-32 ISOFORM X1 UniProtKB/TrEMBL
Pfam Ras UniProtKB/TrEMBL
PhenoGen Rab32 PhenoGen
PRINTS RASTRNSFRMNG UniProtKB/TrEMBL
PROSITE RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
RatGTEx ENSRNOG00000014258 RatGTEx
  ENSRNOG00000086137 RatGTEx
RNAcentral URS00022B49D6 RNACentral
SMART RAB UniProtKB/TrEMBL
  RAN UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
Superfamily-SCOP P-loop containing nucleoside triphosphate hydrolases UniProtKB/TrEMBL
UniProt A0ABK0LDU5_RAT UniProtKB/TrEMBL
  A6JP36 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-28 Rab32  RAB32, member RAS oncogene family  RGD1559997_predicted  similar to RAB32 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1559997_predicted  similar to RAB32 (predicted)  LOC365042  similar to RAB32  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC365042  similar to RAB32      Symbol and Name status set to provisional 70820 PROVISIONAL