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Gene: Rmdn2 (regulator of microtubule dynamics 2) Rattus norvegicus

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Symbol:

Rmdn2

Name:

regulator of microtubule dynamics 2

RGD ID:

1559836

Description:

Predicted to enable microtubule binding activity. Predicted to be located in membrane; microtubule; and spindle pole. Predicted to be active in mitochondrion; mitotic spindle pole; and spindle microtubule. Orthologous to human RMDN2 (regulator of microtubule dynamics 2); INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 17beta-estradiol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Fam82a; Fam82a1; family with sequence similarity 82, member A; family with sequence similarity 82, member A1; LOC313840; MGC116304; regulator of microtubule dynamics protein 2; RMD-2; similar to hypothetical protein FLJ32954

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RMDN2 (regulator of microtubule dynamics 2)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Rmdn2 (regulator of microtubule dynamics 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rmdn2 (regulator of microtubule dynamics 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RMDN2 (regulator of microtubule dynamics 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RMDN2 (regulator of microtubule dynamics 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rmdn2 (regulator of microtubule dynamics 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RMDN2 (regulator of microtubule dynamics 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LOC103220469 (regulator of microtubule dynamics protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rmdn2 (regulator of microtubule dynamics 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Rmdn2 (regulator of microtubule dynamics 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	RMDN2 (regulator of microtubule dynamics 2)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	RMDN2 (regulator of microtubule dynamics 2)	Alliance	DIOPT (HGNC\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rmdn2 (regulator of microtubule dynamics 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	rmd-1	Alliance	DIOPT (InParanoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	rmd-1	Alliance	DIOPT (InParanoid\|OrthoFinder\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	rmd-2	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	rmd-2	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	rmd-3	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	rmd-3	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	rmd-6	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	rmd-6	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rmdn2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	C16C8.18	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	21,101,383 - 21,195,221 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	21,119,396 - 21,193,684 (-)	Ensembl				GRCr8
mRatBN7.2	6	15,372,569 - 15,443,000 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	15,375,496 - 15,441,480 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	15,677,381 - 15,739,885 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	15,999,568 - 16,062,072 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	15,495,833 - 15,558,337 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	2,215,062 - 2,292,288 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	2,216,623 - 2,280,777 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	2,199,087 - 2,268,193 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	2,440,492 - 2,514,419 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	15,046,727 - 15,107,613 (-)	NCBI		Celera
Cytogenetic Map	6	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Experimental Liver Cirrhosis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(1->4)-beta-D-glucan (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (EXP,ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (EXP)

4,4'-sulfonyldiphenol (ISO)

acetamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

aflatoxin M1 (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (EXP)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlordecone (ISO)

chlorpyrifos (ISO)

chromium(6+) (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (EXP)

dexamethasone (ISO)

diarsenic trioxide (ISO)

dioxygen (ISO)

disodium selenite (ISO)

Enterolactone (ISO)

finasteride (EXP)

flutamide (EXP)

FR900359 (ISO)

fulvestrant (ISO)

furan (EXP)

glafenine (EXP)

hydrogen peroxide (ISO)

indometacin (ISO)

lead(0) (ISO)

levofloxacin (EXP)

N-methyl-4-phenylpyridinium (EXP)

N-nitrosodimethylamine (EXP)

nefazodone (EXP)

nickel dichloride (EXP)

nimesulide (EXP)

orphenadrine (EXP)

paracetamol (ISO)

paraquat (EXP)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

rotenone (EXP)

silicon dioxide (EXP)

sodium dichromate (EXP)

tetrachloromethane (EXP,ISO)

titanium dioxide (EXP)

trichloroethene (EXP)

triphenyl phosphate (EXP)

trovafloxacin (EXP)

valdecoxib (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytoplasm (IBA,IEA)

cytosol (ISO)

membrane (IEA)

microtubule (IEA)

mitochondrion (IBA,ISO)

mitotic spindle (ISO)

mitotic spindle pole (IBA,ISO)

spindle (IEA)

spindle microtubule (IBA,ISO)

spindle pole (IEA)

Molecular Function

microtubule binding (IBA,ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:18614015	PMID:34800366	PMID:37153858

Genomics

Comparative Map Data

Rmdn2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	21,101,383 - 21,195,221 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	21,119,396 - 21,193,684 (-)	Ensembl				GRCr8
mRatBN7.2	6	15,372,569 - 15,443,000 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	15,375,496 - 15,441,480 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	15,677,381 - 15,739,885 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	15,999,568 - 16,062,072 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	15,495,833 - 15,558,337 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	2,215,062 - 2,292,288 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	2,216,623 - 2,280,777 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	2,199,087 - 2,268,193 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	2,440,492 - 2,514,419 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	15,046,727 - 15,107,613 (-)	NCBI		Celera
Cytogenetic Map	6	q12	NCBI

RMDN2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	37,920,901 - 38,067,138 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	37,923,187 - 38,067,142 (+)	Ensembl			hg38	GRCh38
GRCh37	2	38,152,430 - 38,294,281 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	38,031,110 - 38,147,784 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	2	37,993,344 - 38,135,162 (+)	NCBI		Celera
Cytogenetic Map	2	p22.2	NCBI
HuRef	2	37,892,352 - 38,034,219 (+)	NCBI		HuRef
CHM1_1	2	38,081,826 - 38,223,645 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	37,924,033 - 38,074,024 (+)	NCBI		T2T-CHM13v2.0

Rmdn2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	79,886,025 - 80,000,630 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	79,919,292 - 80,000,621 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	17	79,578,596 - 79,684,976 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	79,611,863 - 79,693,192 (+)	Ensembl			mm10	GRCm38
MGSCv37	17	80,014,240 - 80,081,492 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	17	79,523,226 - 79,590,478 (+)	NCBI		MGSCv36	mm8
Celera	17	83,926,320 - 83,993,610 (+)	NCBI		Celera
Cytogenetic Map	17	E3	NCBI
cM Map	17	50.3	NCBI

Rmdn2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955441	5,716,934 - 5,774,668 (+)	Ensembl
ChiLan1.0	NW_004955441	5,710,487 - 5,776,351 (+)	NCBI	ChiLan1.0	ChiLan1.0

RMDN2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	88,469,045 - 88,558,921 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	88,472,817 - 88,562,878 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	37,948,081 - 38,087,498 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	38,711,957 - 38,801,058 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	38,716,147 - 38,800,755 (+)	Ensembl			panPan2	panpan1.1

RMDN2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	30,173,479 - 30,240,478 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	30,179,071 - 30,269,373 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	29,986,856 - 30,053,792 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	30,823,188 - 30,890,203 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	30,828,447 - 30,918,797 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	30,049,548 - 30,115,512 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	30,116,501 - 30,183,633 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	30,331,758 - 30,398,722 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Rmdn2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	41,721,111 - 41,805,599 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936663	385,288 - 471,284 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936663	387,358 - 471,199 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RMDN2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	102,215,140 - 102,424,775 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	102,210,367 - 102,307,355 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	108,468,326 - 108,559,987 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LOC103220469
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	69,374,850 - 69,461,107 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	69,374,674 - 69,461,703 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666045	42,497,485 - 42,588,574 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rmdn2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624738	19,533,915 - 19,624,796 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Rmdn2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	7	13,390,187 - 13,447,243 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Rmdn2
550 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	24
Count of miRNA genes:	23
Interacting mature miRNAs:	24
Transcripts:	ENSRNOT00000008045
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
8552962	Pigfal16	Plasma insulin-like growth factor 1 level QTL 16	9.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	6	1975879	46975879	Rat
7411603	Foco13	Food consumption QTL 13	5.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	6	1975879	46975879	Rat
1598843	Cm63	Cardiac mass QTL 63	2.6		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	6	1	44788383	Rat
7411542	Bw127	Body weight QTL 127	5.5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	1975879	46975879	Rat
8693699	Alc37	Alcohol consumption QTL 37	2.6	0.224	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	6	13717169	27053860	Rat
2293706	Bmd20	Bone mineral density QTL 20	4.3	0.0002	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	6	1	25740059	Rat
2292616	Ept15	Estrogen-induced pituitary tumorigenesis QTL 15	4.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	6	1	44788383	Rat
9589048	Scfw3	Subcutaneous fat weight QTL 3	4.57	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	6	1975879	46975879	Rat
10401812	Kidm54	Kidney mass QTL 54			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	6	20097635	65097635	Rat
1576309	Emca7	Estrogen-induced mammary cancer QTL 7	4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	20859430	113082285	Rat
2301964	Bp323	Blood pressure QTL 323	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	6	1	86868070	Rat
2293709	Bss23	Bone structure and strength QTL 23	5.18	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	6	3239989	48239989	Rat
2293650	Bss31	Bone structure and strength QTL 31	5.05	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	6	3239989	48239989	Rat
1300128	Rf16	Renal function QTL 16	3.89		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	6	1	40163351	Rat
70199	Coreg1	Compensatory renal growth QTL 1	11.8		kidney mass (VT:0002707)	compensatory renal growth score (CMO:0001894)	6	14599473	63457687	Rat
10401800	Kidm49	Kidney mass QTL 49			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	6	20097635	65097635	Rat
1300164	Rf15	Renal function QTL 15	3.12		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	6	3239989	48239989	Rat
2301972	Bp325	Blood pressure QTL 325	4.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	6	16089372	61967788	Rat
1358190	Ept1	Estrogen-induced pituitary tumorigenesis QTL 1	4.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	6	1	44788383	Rat
2293656	Bss28	Bone structure and strength QTL 28	6.79	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	6	3239989	48239989	Rat
9589129	Insul24	Insulin level QTL 24	19.06	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	6	1975879	46975879	Rat
8693690	Alc35	Alcohol consumption QTL 35	2.2	0.606	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	6	13717169	27053860	Rat

Markers in Region

RH139913

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	15,379,281 - 15,379,487 (-)	MAPPER	mRatBN7.2
Rnor_6.0	6	2,280,266 - 2,280,471	NCBI	Rnor6.0
Rnor_5.0	6	2,264,103 - 2,264,308	UniSTS	Rnor5.0
RGSC_v3.4	6	2,514,065 - 2,514,270	UniSTS	RGSC3.4
Celera	6	15,046,876 - 15,047,081	UniSTS
Cytogenetic Map	6	q11	UniSTS

RH141186

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	15,441,072 - 15,441,253 (-)	MAPPER	mRatBN7.2
Rnor_6.0	6	2,216,850 - 2,217,030	NCBI	Rnor6.0
Rnor_5.0	6	2,200,852 - 2,201,032	UniSTS	Rnor5.0
RGSC_v3.4	6	2,440,719 - 2,440,899	UniSTS	RGSC3.4
Celera	6	15,107,206 - 15,107,386	UniSTS
Cytogenetic Map	6	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	87	59	6	351	187	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001037200	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001401322	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239634	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764423	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594114	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112130	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112131	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112133	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112140	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261805	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261806	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261807	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261808	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261809	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261810	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261811	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261813	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261814	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261815	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261816	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261817	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261818	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261819	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261820	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261822	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261823	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261824	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261825	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC100261	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000008045 ⟹ ENSRNOP00000008045

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	21,131,181 - 21,186,194 (-)	Ensembl
mRatBN7.2 Ensembl	6	15,379,134 - 15,432,426 (-)	Ensembl
Rnor_6.0 Ensembl	6	2,216,623 - 2,280,777 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097853 ⟹ ENSRNOP00000094581

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	21,119,396 - 21,193,684 (-)	Ensembl
mRatBN7.2 Ensembl	6	15,375,496 - 15,441,480 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000099426 ⟹ ENSRNOP00000091205

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	21,135,701 - 21,193,684 (-)	Ensembl
mRatBN7.2 Ensembl	6	15,383,496 - 15,441,480 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111637 ⟹ ENSRNOP00000085138

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	21,130,921 - 21,179,537 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000135381 ⟹ ENSRNOP00000099447

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	21,120,013 - 21,193,684 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000162974 ⟹ ENSRNOP00000108871

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	21,127,097 - 21,179,537 (-)	Ensembl

RefSeq Acc Id:

NM_001037200 ⟹ NP_001032277

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	21,131,181 - 21,193,684 (-)	NCBI
mRatBN7.2	6	15,378,976 - 15,441,480 (-)	NCBI
Rnor_6.0	6	2,216,623 - 2,280,620 (+)	NCBI
Rnor_5.0	6	2,199,087 - 2,268,193 (+)	NCBI
RGSC_v3.4	6	2,440,492 - 2,514,419 (+)	RGD
Celera	6	15,046,727 - 15,107,613 (-)	RGD

Sequence:

show sequence

CAACCGCTCACTAGTCAAGACTTAATTGGAAACAATCCTCTGTTCACTTACTGCAAGTACATTT
TCACTCACATATACTGCCTACGCTACTTTGGCTGATGAATCTTCAACTGTGTTTGATTCTGGCC
AAAGGATGATGAACTGACCTCGACTTGTCAAGGACACCCTTCACAGGATCTCTCACAAGGACGC
CCTTCGACATTATCTCTCTCATTGAAAGGATGGAGGGGCTGAGTTACTCTTCTTGGGATTTGTT
TAATTCCCCTTTAGAGCTCTCTGAATCCATGACTAAAAGACTCTTCTGCAATTTCTGAAGAAGC
TTCGTGGAATAACCTAAAAAAACTACTGACAGCCTCCGGGTAAGAAATAAAAGCCAAGAAATGC
CCCATTCCACGCACAAAGAACTGCTCCTTGGCATCATGGCGGGAACTGCTGGGATCAGCTTGCT
GGTCCTATGGTACCACAAGATCCTTAAGCCCAGGACAACAATGATTTTCCCCAAGTTTCTTTCT
TTGGGTAAGAAATCCGATTCACTCACTTTGCAAGATGAAAGCTATAGTGAACAAGGAACATCAG
TGGTCTTTCAAAGGGGGCAGCTCCAGATCCTGGAGAAGTTAAACGAGTTACTGACCAATGTGGA
GGAACTGAAGGAGGAGATCAAATTCCTTAAAGAGACGATTCCAAAGCTGGAGGAATGTATACAA
GATGAACTTGGAGTGAGGGTAACAGTTCATCAGGTCAGTCCTCAGCACAGAGCTAGAAAAAAGA
AGACAACGACGACGACAGTCCAACGTCCAGCTACAAGCAATAGTTCAGAGGAGGCAGAAAGTGA
AGGAGGGTATATTACAGCTAACACTGACACAGAAGAACAGAGTTTCCCGGTCCCTAAGGCTCTT
AACACACACATAGAGGATCTAAAGTTGGATGTCCTCCTTCAGAAGGTAGACCACTTACGGCTAA
ATGAGGCTCACAAAATGGAGAGTTTCGAGCTACTTTGTGACCACAAAGAGAAGTTTAGTGAAGA
AATAGAGTTTCTGTGGCGGCTTGTCCGTGCCTATGGAGACATGTATGACCTATCTACAAACACG
CAGGAAAAGAAACACTATGCTAATGTTGGAAAAACTTTAGGAGAGAGAGCTATTACCAGAGCGC
CTATGAATGGACACTGCCATCTGTGGTATGCACTTTTGTGTGGTTATGTATCTGAGTTTGAGGG
CTTGCAAAATAAAATTAACTGTGGACATCTATTCAAGAAGCATCTAGATATAGCCATCCAGCTT
TTGCCTGAAGAACCCGTTTTATATTACCTCAAGGGAAGATATTGTTATACTGTCTCAAAACTCA
GCTGGATTGAGAAAAAAATGGCTGCTACTCTATTTGGGGAAATACCATCTTCAACAGTTCATGA
AGCTTTGCATAACTTCCTTAAGACTGAAGAATTGCAACCTGGGTATTCTGTGTCCAACTATATG
TATGTGGCCAAGTGTTATGTTGATCTTGGGGAATCTCGGGAGGCTTGGAAATTCTGTAACTTGG
CATTGTTATTGCCTATCGTCACCAAAGAGGACAAGGATGCACACAAGGAAGTGAAGAAAATAAT
TGGTTCTTTGAAGAGGTAAATAAAGAGCTTATTCTTCAGCAAATTCAATACGTCTTCTAGACTT
TAACAGATTGTACTTTTATAATGCTTTCTCCTTAATGTAAAGATCATGTATTCTCATTTGATTT
GAAGGTCTAGCCTTGCCTTCTACAGCCACTGCACCATGAGACAAATCATGTTCTCTGAAGACAG
TGCTTACTCTAATGTTAGCGTATAATGATCTCTGGATACTTCGTTTTATTCATGTCAATAAACT
ACAGCCTTAAGAGTGTTTGTGTAACCAAGACTTAAACCTATTTAATAAAACGCACCCTAGTGAA
TGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001401322 ⟹ NP_001388251

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	21,131,181 - 21,190,488 (-)	NCBI
mRatBN7.2	6	15,378,976 - 15,438,283 (-)	NCBI

RefSeq Acc Id:

XM_006239634 ⟹ XP_006239696

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	21,127,700 - 21,179,441 (-)	NCBI
mRatBN7.2	6	15,372,569 - 15,428,586 (-)	NCBI
Rnor_6.0	6	2,227,206 - 2,284,229 (+)	NCBI
Rnor_5.0	6	2,199,087 - 2,268,193 (+)	NCBI

Sequence:

show sequence

AAATAAAAGCCAAGAAATGCCCCATTCCACGCACAAAGAACTGCTCCTTGGCATCATGGCGGGA
ACTGCTGGGATCAGCTTGCTGGTCCTATGGTACCACAAGATCCTTAAGCCCAGGACAACAATGA
TTTTCCCCAAGTTTCTTTCTTTGGGTAAGAAATCCGATTCACTCACTTTGCAAGATGAAAGCTA
TAGTGAACAAGGAACATCAGTGGTCTTTCAAAGGGGGCAGCTCCAGATCCTGGAGAAGTTAAAC
GAGTTACTGACCAATGTGGAGGAACTGAAGGAGGAGATCAAATTCCTTAAAGAGACGATTCCAA
AGCTGGAGGAATGTATACAAGATGAACTTGGAGTGAGGGTAACAGTTCATCAGGTCAGTCCTCA
GCACAGAGCTAGAAAAAAGAAGACAACGACGACGACAGTCCAACGTCCAGCTACAAGCAATAGT
TCAGAGGAGGCAGAAAGTGAAGGAGGGCACTGTCTGAACTCTGGACACACAACTGAGAACCAAT
CAGTCCCGTAACTTCAACCACTTTCCTTTAAGATGAAGCAGGATGCTGAAGAGGGATGCTCTCA
GGCATTTTACCACGAGAGGCCCCAAAGGTGAAGGCGCACACAGAGCATTCCCAGTGCTTAGCAT
CCCGTGTAATTAGGTGCTCGCTTGACCCACCTGGCAAAGACAAGGACTTGCCGAGAGACTGAAG
GTGTCACCCATGCGAACACTGACTCACCTGCAGCTGTGAAAGGAGACTGCTGCAGAGCAGAGAC
GCTCTTCCCATGGTGAGCATCCCAGCAGAATGCTTGCCAAGCCCGGATTCTGTAGGAATGGGTG
TTGTTAATAAAGCGCATGTGCAGTGTGGGCAGAGAAGAGCTGCACGCACAGCCTCTGGGGCCAG
TGCTGCTGGGATGGGTGGAAGCACAGGACACTGAGAGCTGCTGGGACAAGTGTGTCCTCAGGTG
AGACCAGCCCGGAGCACACCAGCAGAGGACTGAGGAGCCAAGGGAGAGGAAGCTCTCAAGAGCA
GCAGTGAGGCCCTGTGCTTTCGTCCAGCGGACACAAGCATGCATCATGGCTCCTTCTTACCTGC
ATACATGATGCCAGTTTCCCAACCCTGAATTCTGTCCTTAAAGTGAGCCACTGAGATGGCTCAG
AGGGTAAGGCCTTTGCCACACAAGCCTGACCACCTGTGCCCGACCCCTGGAGCCCAACTTAAGA
GACAACCAACCCCCTGAGGCGGTCCTGTGACCTCCACCTACATGCCGTCTGTCATGGTATTCAC
ACCCCAACCCCAGACAGACATTCAGTAGCAACAAACAAAACTATTTTAATTAAAATGTGGTAAA
TAATATGTGTCCTGCTGTTTTACGTCTTAATTGAGATGATACAGGACGATGCTCCGCACCCTGT
CTAGTCTGTGGTGAGTTCTGTAAACTATCGGTGTTTCATCAGTTAGAAGGGAGCAGCTCTGAGG
GTGCAGCTTGGAGTTTGTGAGGCACCTGCCTGGCTGCAAGCCTGCGGATTGTATCCCCAGCACC
ATGGGGGGGGGGGGGCAAGTGTATCAAATGCACTAGAAGGGGGTCAGGAGGTTTCTTTTCCACA
AAGACTTAGGGAGTGAAGAGATCCAGGGTCTGCCTCATCTACCCAGCTTTACCTGATTGTGAAA
ATGACTGCCGACAGTAAGTCCATGGCTGTGACTCAAAAAACGTGTTTTGTAAAAGCAGGTGCTG
CTTTTTAAATGTCCCCTCCCTGGTTCGTCTGTCTTCAGTACAAGTTCTTTAAGAGTCGCTTTAC
CACTTCACTGGATGTAAAGGCATCGGGCAAAGAACATTCTAGTGGAGAAGGGAGGAGTGGGAGA
CCAGGGATGTAGAAGACTGCTGGCGAGAGGCCGTCCCCAGGAAAGAACTGGAAGAAATCCTATT
GTCTCCTTCACTTAACTGCATTTTCGGCTCTTAATCTGTCAGCTGACTCCTTGAACATAATGAA
ATCAGAATGCACATTCCATAGCCATAGACCCTGCAGCTCTTCAGAAAGGGGGGGCCACAGAATG
GTTTTACTCCAAAGCAAAGCCAGCAGGTTCTAGAGTCTCTGTCCTTCCATTCTGTGCTGTTACC
ATGGCAGCTCCACGCGCAGCCTAAGTATTCAGTCTTCTGACCTGTTCCACCTACACAGGGCATT
TTACGTCTTATGAATGATGGCCTAGAAGGGAAAGACTTACTCTGGATTAAATTCAGTATGGGAA
AATGCTTAAGCTGCTGGAAAAAGAACCGGTGTTTCCAACCAAATAGCGAACATCAAGTTACTCC
ACAGTGCGTGTATCACGAATGCTCTCGTACTTTACAACCAAAAGTGGCTCTGGGTCTCATAACA
TGTCGTCCTTCTTCAACATGTAAAATGGGTAGAAAAGTCTCTTCCTCAAGTGTGGCTAATGACT
TACTTCCGTGTAAAGGAAGACACACTCTACTGCAGAGATTCCGAAAGAGCAAGCGACAGCAAAG
CAGAGTTAACTTTGATTCTCAGGAAGACGTAACTTCCACTACCACGAACTCCTCAGATCACTTT
ACTCTCATTAAATCTCGAAAACCTTTTTCATCCCGCAAGCTGAGTATAGTTTCCTGTCACAGGG
ATAGCATTAGCTGTGATAACCCACAAGGTAGTCTGAACCTGCCTCATGCAAATGAACTTCAAGG
CTTTTCTAGAAGGTCAACTAATACGGATACTCAAAAACGTATAAGCTTCTCTGATCCCGTACAT
GGCAGTAGATGCTTTCCAAGTCTGGAAACAAAACCCGTTTCCTCAGGCCACTGGACTGTTGACA
GATCGTCTTACCCACCAAGTCTAACGACGTCTCTCTTTTCTCTTCCAACCGTCATTTCTTCTTC
CAGTCAAGTAAATGTATCTGTTGCTGAGAGTCAAGAACATGGCCAACCAAATAAGGATCTGGAA
GATGCCCTCCATCACAGGTCTCAGAGTCAGAGTAGAAATCACTCTGCAGTTGGCTTGGAACAGC
ATCTGTCTCTGAATAGAACTTCCACCAGCCTCCTCCGTGATGAACTTTCTTCACTGTACCAAAC
TGTCAATAGCTTAACTGTTGACGTTAACTTGGGCTCCTATGGAGAAGAAAGCTTTGATACCTTA
CCTCTAGATGAAGATATACCTTCGCCGATTGAAATGGCTGAAATAAGGTATATTACAGCTAACA
CTGACACAGAAGAACAGAGTTTCCCGGTCCCTAAGGCTCTTAACACACACATAGAGGATCTAAA
GTTGGATGTCCTCCTTCAGAAGGTAGACCACTTACGGCTAAATGAGGCTCACAAAATGGAGAGT
TTCGAGCTACTTTGTGACCACAAAGAGAAGTTTAGTGAAGAAATAGAGTTTCTGTGGCGGCTTG
TCCGTGCCTATGGAGACATGTATGACCTATCTACAAACACGCAGGAAAAGAAACACTATGCTAA
TGTTGGAAAAACTTTAGGAGAGAGAGCTATTACCAGAGCGCCTATGAATGGACACTGCCATCTG
TGGTATGCACTTTTGTGTGGTTATGTATCTGAGTTTGAGGGCTTGCAAAATAAAATTAACTGTG
GACATCTATTCAAGAAGCATCTAGATATAGCCATCCAGCTTTTGCCTGAAGAACCCGTTTTATA
TTACCTCAAGGGAAGATATTGTTATACTGTCTCAAAACTCAGCTGGATTGAGAAAAAAATGGCT
GCTACTCTATTTGGGGAAATACCATCTTCAACAGTTCATGAAGCTTTGCATAACTTCCTTAAGA
CTGAAGAATTGCAACCTGGGTATTCTGTGTCCAACTATATGTATGTGGCCAAGTGTTATGTTGA
TCTTGGGGAATCTCGGGAGGCTTGGAAATTCTGTAACTTGGCATTGTTATTGCCTATCGTCACC
AAAGAGGACAAGGATGCACACAAGGAAGTGAAGAAAATAATTGGTTCTTTGAAGAGGGCATTCT
GCACAAGTTCTTCTTCGTGAGTGCCAATTTCCTGTGGTTGCTTCACTCACCACTCAGAATACCG
GACCTTGGAAAAACCAGAACATGGTCAGCGTGCAGGTGTTGAGGCCAGACTAACGAGACCCCTT
CCACCTAAAGATGAAGAGAGTCTGACTTCTCAGGAGACTTCACGTACAGTACTGGGCAAAGAGA
GTTCTAATCCAGAACTCTGAGTATCTCCAAGACTCAAAGATACTCCAATACTTTGAAGATACCA
ATCAAAACTATGTATTACAGTTTCTCATAACCCCCGAGAGACGTGAACAGTGTTCCGACTTCTC
GGTGCTGTGATGTCCCTTAGTCTGTGTTGTTAGCTCTCTCCTTCAGGACAAATGGCCTTCGCTG
TAATAAAAATGGAGTCATGTCACTTGAGCCCCAA

hide sequence

RefSeq Acc Id:

XM_039112130 ⟹ XP_038968058

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	21,131,181 - 21,179,441 (-)	NCBI
mRatBN7.2	6	15,378,976 - 15,428,586 (-)	NCBI

RefSeq Acc Id:

XM_039112131 ⟹ XP_038968059

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	21,131,181 - 21,195,208 (-)	NCBI
mRatBN7.2	6	15,378,976 - 15,442,995 (-)	NCBI

RefSeq Acc Id:

XM_039112133 ⟹ XP_038968061

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	21,131,181 - 21,190,846 (-)	NCBI
mRatBN7.2	6	15,378,976 - 15,438,547 (-)	NCBI

RefSeq Acc Id:

XM_039112140 ⟹ XP_038968068

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	21,131,181 - 21,195,221 (-)	NCBI
mRatBN7.2	6	15,378,976 - 15,443,000 (-)	NCBI

RefSeq Acc Id:

XM_063261805 ⟹ XP_063117875

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	21,101,383 - 21,179,441 (-)	NCBI

RefSeq Acc Id:

XM_063261806 ⟹ XP_063117876

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	21,101,383 - 21,195,211 (-)	NCBI

RefSeq Acc Id:

XM_063261807 ⟹ XP_063117877

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	21,101,383 - 21,190,265 (-)	NCBI

RefSeq Acc Id:

XM_063261808 ⟹ XP_063117878

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	21,101,383 - 21,190,846 (-)	NCBI

RefSeq Acc Id:

XM_063261809 ⟹ XP_063117879

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	21,101,383 - 21,194,938 (-)	NCBI

RefSeq Acc Id:

XM_063261810 ⟹ XP_063117880

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	21,101,383 - 21,193,776 (-)	NCBI

RefSeq Acc Id:

XM_063261811 ⟹ XP_063117881

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	21,101,383 - 21,195,212 (-)	NCBI

RefSeq Acc Id:

XM_063261813 ⟹ XP_063117883

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	21,101,383 - 21,195,212 (-)	NCBI

RefSeq Acc Id:

XM_063261814 ⟹ XP_063117884

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	21,101,383 - 21,187,632 (-)	NCBI

RefSeq Acc Id:

XM_063261815 ⟹ XP_063117885

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	21,101,383 - 21,192,405 (-)	NCBI

RefSeq Acc Id:

XM_063261816 ⟹ XP_063117886

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	21,101,383 - 21,195,211 (-)	NCBI

RefSeq Acc Id:

XM_063261817 ⟹ XP_063117887

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	21,127,700 - 21,190,846 (-)	NCBI

RefSeq Acc Id:

XM_063261818 ⟹ XP_063117888

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	21,127,700 - 21,195,207 (-)	NCBI

RefSeq Acc Id:

XM_063261819 ⟹ XP_063117889

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	21,127,700 - 21,195,207 (-)	NCBI

RefSeq Acc Id:

XM_063261820 ⟹ XP_063117890

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	21,127,700 - 21,192,395 (-)	NCBI

RefSeq Acc Id:

XM_063261822 ⟹ XP_063117892

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	21,131,181 - 21,195,206 (-)	NCBI

RefSeq Acc Id:

XM_063261823 ⟹ XP_063117893

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	21,101,383 - 21,179,441 (-)	NCBI

RefSeq Acc Id:

XM_063261824 ⟹ XP_063117894

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	21,127,700 - 21,179,441 (-)	NCBI

RefSeq Acc Id:

XM_063261825 ⟹ XP_063117895

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	21,131,181 - 21,179,441 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001032277	(Get FASTA)	NCBI Sequence Viewer
	NP_001388251	(Get FASTA)	NCBI Sequence Viewer
	XP_006239696	(Get FASTA)	NCBI Sequence Viewer
	XP_038968058	(Get FASTA)	NCBI Sequence Viewer
	XP_038968059	(Get FASTA)	NCBI Sequence Viewer
	XP_038968061	(Get FASTA)	NCBI Sequence Viewer
	XP_038968068	(Get FASTA)	NCBI Sequence Viewer
	XP_063117875	(Get FASTA)	NCBI Sequence Viewer
	XP_063117876	(Get FASTA)	NCBI Sequence Viewer
	XP_063117877	(Get FASTA)	NCBI Sequence Viewer
	XP_063117878	(Get FASTA)	NCBI Sequence Viewer
	XP_063117879	(Get FASTA)	NCBI Sequence Viewer
	XP_063117880	(Get FASTA)	NCBI Sequence Viewer
	XP_063117881	(Get FASTA)	NCBI Sequence Viewer
	XP_063117883	(Get FASTA)	NCBI Sequence Viewer
	XP_063117884	(Get FASTA)	NCBI Sequence Viewer
	XP_063117885	(Get FASTA)	NCBI Sequence Viewer
	XP_063117886	(Get FASTA)	NCBI Sequence Viewer
	XP_063117887	(Get FASTA)	NCBI Sequence Viewer
	XP_063117888	(Get FASTA)	NCBI Sequence Viewer
	XP_063117889	(Get FASTA)	NCBI Sequence Viewer
	XP_063117890	(Get FASTA)	NCBI Sequence Viewer
	XP_063117892	(Get FASTA)	NCBI Sequence Viewer
	XP_063117893	(Get FASTA)	NCBI Sequence Viewer
	XP_063117894	(Get FASTA)	NCBI Sequence Viewer
	XP_063117895	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI00262	(Get FASTA)	NCBI Sequence Viewer
	EDM02789	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000008045
	ENSRNOP00000008045.4
	ENSRNOP00000085138
	ENSRNOP00000094581
	ENSRNOP00000099447
	ENSRNOP00000108871
GenBank Protein	Q498D5	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001032277 ⟸ NM_001037200

- UniProtKB:

Q498D5 (UniProtKB/Swiss-Prot), A0A8I6APZ8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPHSTHKELLLGIMAGTAGISLLVLWYHKILKPRTTMIFPKFLSLGKKSDSLTLQDESYSEQGT
SVVFQRGQLQILEKLNELLTNVEELKEEIKFLKETIPKLEECIQDELGVRVTVHQVSPQHRARK
KKTTTTTVQRPATSNSSEEAESEGGYITANTDTEEQSFPVPKALNTHIEDLKLDVLLQKVDHLR
LNEAHKMESFELLCDHKEKFSEEIEFLWRLVRAYGDMYDLSTNTQEKKHYANVGKTLGERAITR
APMNGHCHLWYALLCGYVSEFEGLQNKINCGHLFKKHLDIAIQLLPEEPVLYYLKGRYCYTVSK
LSWIEKKMAATLFGEIPSSTVHEALHNFLKTEELQPGYSVSNYMYVAKCYVDLGESREAWKFCN
LALLLPIVTKEDKDAHKEVKKIIGSLKR

hide sequence

RefSeq Acc Id:

XP_006239696 ⟸ XM_006239634

- Peptide Label:

isoform X3

- Sequence:

show sequence

MNDGLEGKDLLWIKFSMGKCLSCWKKNRCFQPNSEHQVTPQCVYHECSRTLQPKVALGLITCRP
SSTCKMGRKVSSSSVANDLLPCKGRHTLLQRFRKSKRQQSRVNFDSQEDVTSTTTNSSDHFTLI
KSRKPFSSRKLSIVSCHRDSISCDNPQGSLNLPHANELQGFSRRSTNTDTQKRISFSDPVHGSR
CFPSLETKPVSSGHWTVDRSSYPPSLTTSLFSLPTVISSSSQVNVSVAESQEHGQPNKDLEDAL
HHRSQSQSRNHSAVGLEQHLSLNRTSTSLLRDELSSLYQTVNSLTVDVNLGSYGEESFDTLPLD
EDIPSPIEMAEIRYITANTDTEEQSFPVPKALNTHIEDLKLDVLLQKVDHLRLNEAHKMESFEL
LCDHKEKFSEEIEFLWRLVRAYGDMYDLSTNTQEKKHYANVGKTLGERAITRAPMNGHCHLWYA
LLCGYVSEFEGLQNKINCGHLFKKHLDIAIQLLPEEPVLYYLKGRYCYTVSKLSWIEKKMAATL
FGEIPSSTVHEALHNFLKTEELQPGYSVSNYMYVAKCYVDLGESREAWKFCNLALLLPIVTKED
KDAHKEVKKIIGSLKRAFCTSSSS

hide sequence

Ensembl Acc Id:

ENSRNOP00000008045 ⟸ ENSRNOT00000008045

RefSeq Acc Id:	XP_038968068 ⟸ XM_039112140
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_038968059 ⟸ XM_039112131
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6APZ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038968061 ⟸ XM_039112133
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6APZ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038968058 ⟸ XM_039112130
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000091205 ⟸ ENSRNOT00000099426

Ensembl Acc Id:

ENSRNOP00000094581 ⟸ ENSRNOT00000097853

RefSeq Acc Id:	NP_001388251 ⟸ NM_001401322
- UniProtKB:	Q498D5 (UniProtKB/Swiss-Prot), A0A8I6APZ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063117883 ⟸ XM_063261813
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063117881 ⟸ XM_063261811
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063117886 ⟸ XM_063261816
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063117876 ⟸ XM_063261806
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063117879 ⟸ XM_063261809
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063117880 ⟸ XM_063261810
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063117885 ⟸ XM_063261815
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063117878 ⟸ XM_063261808
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063117877 ⟸ XM_063261807
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063117884 ⟸ XM_063261814
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063117893 ⟸ XM_063261823
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_063117875 ⟸ XM_063261805
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063117888 ⟸ XM_063261818
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I6AMI8 (UniProtKB/TrEMBL), A6H9T4 (UniProtKB/TrEMBL), A0A8I6APZ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063117889 ⟸ XM_063261819
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I6AMI8 (UniProtKB/TrEMBL), A6H9T4 (UniProtKB/TrEMBL), A0A8I6APZ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063117890 ⟸ XM_063261820
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I6AMI8 (UniProtKB/TrEMBL), A6H9T4 (UniProtKB/TrEMBL), A0A8I6APZ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063117887 ⟸ XM_063261817
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I6AMI8 (UniProtKB/TrEMBL), A6H9T4 (UniProtKB/TrEMBL), A0A8I6APZ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063117894 ⟸ XM_063261824
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_063117892 ⟸ XM_063261822
- Peptide Label:	isoform X7
- UniProtKB:	Q498D5 (UniProtKB/Swiss-Prot), A0A8I6APZ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063117895 ⟸ XM_063261825
- Peptide Label:	isoform X10

Ensembl Acc Id:

ENSRNOP00000085138 ⟸ ENSRNOT00000111637

Ensembl Acc Id:

ENSRNOP00000099447 ⟸ ENSRNOT00000135381

Ensembl Acc Id:

ENSRNOP00000108871 ⟸ ENSRNOT00000162974

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q498D5-F1-model_v2	AlphaFold	Q498D5	1-412	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1559836	AgrOrtholog
BioCyc Gene	G2FUF-38509	BioCyc
Ensembl Genes	ENSRNOG00000006082	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000008045	ENTREZGENE
	ENSRNOT00000008045.6	UniProtKB/Swiss-Prot
	ENSRNOT00000097853	ENTREZGENE
	ENSRNOT00000111637	ENTREZGENE
	ENSRNOT00000135381	ENTREZGENE
	ENSRNOT00000162974	ENTREZGENE
Gene3D-CATH	1.25.40.10	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7368645	IMAGE-MGC_LOAD
InterPro	RMD1-3_a_helical_rpt	UniProtKB/Swiss-Prot
	TPR-like_helical_dom_sf	UniProtKB/Swiss-Prot
KEGG Report	rno:313840	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:116304	IMAGE-MGC_LOAD
NCBI Gene	313840	ENTREZGENE
PANTHER	REGULATOR OF MICROTUBULE DYNAMICS PROTEIN	UniProtKB/Swiss-Prot
	REGULATOR OF MICROTUBULE DYNAMICS PROTEIN 2	UniProtKB/Swiss-Prot
Pfam	RMD1-3	UniProtKB/Swiss-Prot
PhenoGen	Rmdn2	PhenoGen
RatGTEx	ENSRNOG00000006082	RatGTEx
Superfamily-SCOP	SSF48452	UniProtKB/Swiss-Prot
UniProt	A0A8I5ZYK7_RAT	UniProtKB/TrEMBL
	A0A8I6AMI8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6APZ8	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0L6C3_RAT	UniProtKB/TrEMBL
	A0ABK0LS88_RAT	UniProtKB/TrEMBL
	A6H9T4	ENTREZGENE, UniProtKB/TrEMBL
	Q498D5	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-01-17	Rmdn2	regulator of microtubule dynamics 2	Fam82a1	family with sequence similarity 82, member A1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2009-12-15	Fam82a1	family with sequence similarity 82, member A1	Fam82a	family with sequence similarity 82, member A	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-05	Fam82a	family with sequence similarity 82, member A	LOC313840	similar to hypothetical protein FLJ32954	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	LOC313840	similar to hypothetical protein FLJ32954			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD