Nacad (NAC alpha domain containing) - Rat Genome Database

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Gene: Nacad (NAC alpha domain containing) Rattus norvegicus
Analyze
Symbol: Nacad
Name: NAC alpha domain containing
RGD ID: 1559824
Description: Predicted to enable unfolded protein binding activity. Predicted to be involved in protein targeting to membrane. Predicted to be part of nascent polypeptide-associated complex. Predicted to be active in cytoplasm. Orthologous to human NACAD (NAC alpha domain containing); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC289786; LOC289786; NAC-alpha domain-containing protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81485,679,215 - 85,688,742 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1485,679,215 - 85,688,147 (-)EnsemblGRCr8
mRatBN7.21481,465,299 - 81,473,866 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1481,465,299 - 81,473,781 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1485,866,587 - 85,875,069 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01487,106,390 - 87,114,872 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01483,555,986 - 83,564,468 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01486,860,607 - 86,868,605 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1486,860,608 - 86,868,598 (-)Ensemblrn6Rnor6.0
Rnor_5.01480,494,051 - 80,502,042 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41487,354,263 - 87,363,221 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1480,347,050 - 80,355,532 (-)NCBICelera
Cytogenetic Map14q21NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:8889548  


Genomics

Comparative Map Data
Nacad
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81485,679,215 - 85,688,742 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1485,679,215 - 85,688,147 (-)EnsemblGRCr8
mRatBN7.21481,465,299 - 81,473,866 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1481,465,299 - 81,473,781 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1485,866,587 - 85,875,069 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01487,106,390 - 87,114,872 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01483,555,986 - 83,564,468 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01486,860,607 - 86,868,605 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1486,860,608 - 86,868,598 (-)Ensemblrn6Rnor6.0
Rnor_5.01480,494,051 - 80,502,042 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41487,354,263 - 87,363,221 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1480,347,050 - 80,355,532 (-)NCBICelera
Cytogenetic Map14q21NCBI
NACAD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38745,080,437 - 45,088,969 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl745,080,437 - 45,088,969 (-)Ensemblhg38GRCh38
GRCh37745,120,036 - 45,128,568 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36745,067,578 - 45,095,757 (-)NCBIBuild 36Build 36hg18NCBI36
Celera745,218,992 - 45,227,329 (-)NCBICelera
Cytogenetic Map7p13NCBI
HuRef745,004,007 - 45,012,344 (-)NCBIHuRef
CHM1_1745,123,853 - 45,132,190 (-)NCBICHM1_1
T2T-CHM13v2.0745,241,246 - 45,249,778 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2745,159,326 - 45,167,663 (-)NCBI
Nacad
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39116,547,814 - 6,556,059 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl116,547,823 - 6,556,053 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38116,597,814 - 6,606,059 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl116,597,823 - 6,606,053 (-)Ensemblmm10GRCm38
MGSCv37116,497,826 - 6,506,057 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36116,497,823 - 6,506,057 (-)NCBIMGSCv36mm8
MGSCv36116,482,285 - 6,490,519 (-)NCBIMGSCv36mm8
Cytogenetic Map11A1NCBI
cM Map114.6NCBI
Nacad
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554567,224,202 - 7,230,660 (+)Ensembl
ChiLan1.0NW_0049554567,224,224 - 7,230,736 (+)NCBIChiLan1.0ChiLan1.0
NACAD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2649,993,705 - 50,003,426 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1798,318,443 - 98,328,164 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0745,794,340 - 45,802,532 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1745,861,001 - 45,869,388 (-)NCBIPanPan1.1PanPan1.1panPan2
NACAD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11610,393,993 - 10,394,424 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha162,610,385 - 2,618,972 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01614,241,933 - 14,250,521 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1614,241,067 - 14,251,422 (+)EnsemblROS_Cfam_1.0 Ensembl
UNSW_CanFamBas_1.01613,875,029 - 13,883,618 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01613,854,540 - 13,863,130 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Nacad
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118100,672,261 - 100,682,284 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647819,884,067 - 19,893,673 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647819,883,992 - 19,893,917 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NACAD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11850,385,116 - 50,394,787 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21855,216,074 - 55,225,617 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NACAD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12113,594,969 - 13,603,436 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2113,598,304 - 13,605,614 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660628,925,669 - 8,934,341 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nacad
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247407,299,294 - 7,307,056 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Nacad
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11175,529,006 - 75,537,441 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Nacad
35 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:110
Count of miRNA genes:100
Interacting mature miRNAs:108
Transcripts:ENSRNOT00000044768
Prediction methods:Microtar, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631213Bw60Body weight QTL604.51retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)1484164970100078267Rat
1582236Gluco22Glucose level QTL 223.30.0164blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147764007196755654Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1459848686104848686Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1477914838104348525Rat
70153Bp59Blood pressure QTL 593.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)147297021087582095Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1433424686102238540Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1474255551109089856Rat
1582197Gluco27Glucose level QTL 273.40.0006blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)147764007196755654Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1462398852107398852Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1477640071100078267Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1460854936105854936Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1474255551109089856Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1411334716100078267Rat
1582255Gluco29Glucose level QTL 293.10.0025blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)147764007196755654Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1459848686104848686Rat
1582209Gluco20Glucose level QTL 203.80.0005blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147764007196755654Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144261625899224555Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)146592028399224555Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143941117087582095Rat

Markers in Region
RH129519  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81485,679,477 - 85,679,887 (+)Marker Load Pipeline
mRatBN7.21481,465,561 - 81,465,971 (+)MAPPERmRatBN7.2
Rnor_6.01486,860,870 - 86,861,279NCBIRnor6.0
Rnor_5.01480,494,314 - 80,494,723UniSTSRnor5.0
RGSC_v3.41487,355,015 - 87,355,424UniSTSRGSC3.4
Celera1480,347,313 - 80,347,722UniSTS
RH 3.4 Map14586.4UniSTS
Cytogenetic Map14q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
15 12 67 159 82 81 50 78 50 6 317 178 11 138 66 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000087212   ⟹   ENSRNOP00000074030
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1485,679,215 - 85,687,697 (-)Ensembl
mRatBN7.2 Ensembl1481,465,299 - 81,473,781 (-)Ensembl
Rnor_6.0 Ensembl1486,860,608 - 86,868,598 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102318   ⟹   ENSRNOP00000079182
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1485,679,215 - 85,687,697 (-)Ensembl
mRatBN7.2 Ensembl1481,465,299 - 81,473,781 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000132648   ⟹   ENSRNOP00000100754
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1485,679,215 - 85,688,147 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000139797   ⟹   ENSRNOP00000112124
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1485,679,215 - 85,687,697 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000166406   ⟹   ENSRNOP00000105565
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1485,679,215 - 85,687,697 (-)Ensembl
RefSeq Acc Id: NM_001100655   ⟹   NP_001094125
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81485,679,215 - 85,687,697 (-)NCBI
mRatBN7.21481,465,299 - 81,473,781 (-)NCBI
Rnor_6.01486,860,607 - 86,868,605 (-)NCBI
Rnor_5.01480,494,051 - 80,502,042 (-)NCBI
Celera1480,347,050 - 80,355,532 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039091759   ⟹   XP_038947687
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81485,679,215 - 85,688,742 (-)NCBI
mRatBN7.21481,465,299 - 81,473,866 (-)NCBI
RefSeq Acc Id: NP_001094125   ⟸   NM_001100655
- UniProtKB: F1M6E5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000074030   ⟸   ENSRNOT00000087212
RefSeq Acc Id: XP_038947687   ⟸   XM_039091759
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZMB0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000079182   ⟸   ENSRNOT00000102318
Ensembl Acc Id: ENSRNOP00000105565   ⟸   ENSRNOT00000166406
Ensembl Acc Id: ENSRNOP00000100754   ⟸   ENSRNOT00000132648
Ensembl Acc Id: ENSRNOP00000112124   ⟸   ENSRNOT00000139797
Protein Domains
NAC-A/B

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M6E5-F1-model_v2 AlphaFold F1M6E5 1-1416 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699481
Promoter ID:EPDNEW_R10003
Type:initiation region
Name:Nacad_1
Description:NAC alpha domain containing
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01486,868,658 - 86,868,718EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1559824 AgrOrtholog
BioCyc Gene G2FUF-15071 BioCyc
Ensembl Genes ENSRNOG00000053875 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000087212.3 UniProtKB/TrEMBL
  ENSRNOT00000102318.2 UniProtKB/TrEMBL
  ENSRNOT00000132648 ENTREZGENE
  ENSRNOT00000132648.1 UniProtKB/TrEMBL
  ENSRNOT00000139797.1 UniProtKB/TrEMBL
  ENSRNOT00000166406 ENTREZGENE
  ENSRNOT00000166406.1 UniProtKB/TrEMBL
Gene3D-CATH 2.20.70.30 UniProtKB/TrEMBL
  DNA helicase RuvA subunit, C-terminal domain UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7311803 IMAGE-MGC_LOAD
InterPro EGD2/NACA UniProtKB/TrEMBL
  NAC-like_UBA UniProtKB/TrEMBL
  NAC_A/B_dom_sf UniProtKB/TrEMBL
  NACAD_UBA UniProtKB/TrEMBL
  Nas_poly-pep-assoc_cplx UniProtKB/TrEMBL
MGC_CLONE MGC:109270 IMAGE-MGC_LOAD
NCBI Gene 289786 ENTREZGENE
PANTHER PTHR21713 UniProtKB/TrEMBL
Pfam HYPK_UBA UniProtKB/TrEMBL
  NAC UniProtKB/TrEMBL
PhenoGen Nacad PhenoGen
PROSITE NAC_AB UniProtKB/TrEMBL
RatGTEx ENSRNOG00000053875 RatGTEx
SMART NAC UniProtKB/TrEMBL
UniProt A0A8I5ZMB0 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L8A8_RAT UniProtKB/TrEMBL
  A0ABK0LP84_RAT UniProtKB/TrEMBL
  A0ABK0M028_RAT UniProtKB/TrEMBL
  F1M6E5 ENTREZGENE, UniProtKB/TrEMBL
  Q5BJV5_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-04 Nacad  NAC alpha domain containing  LOC289786  hypothetical protein LOC289786  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC289786  hypothetical protein LOC289786      Symbol and Name status set to provisional 70820 PROVISIONAL