Dcdc2c (doublecortin domain containing 2C) - Rat Genome Database

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Gene: Dcdc2c (doublecortin domain containing 2C) Rattus norvegicus
Analyze
Symbol: Dcdc2c
Name: doublecortin domain containing 2C
RGD ID: 1559651
Description: Predicted to be involved in intracellular signal transduction. Predicted to be located in cytoplasm and sperm flagellum. Predicted to be active in microtubule and microtubule organizing center. Orthologous to human DCDC2C (doublecortin domain containing 2C); INTERACTS WITH 1-naphthyl isothiocyanate; bisphenol A; dimethylarsinic acid.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: doublecortin domain-containing protein 2C; LOC500637; RGD1559651; similar to Ab2-162
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8650,832,407 - 50,907,437 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl650,831,964 - 50,906,439 (-)EnsemblGRCr8
mRatBN7.2645,103,838 - 45,179,040 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl645,061,553 - 45,178,046 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx645,431,392 - 45,469,144 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0645,746,260 - 45,784,008 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0645,183,126 - 45,220,878 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0647,737,814 - 47,812,219 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl647,774,060 - 47,848,075 (-)Ensemblrn6Rnor6.0
Rnor_5.0656,439,766 - 56,513,986 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4646,349,333 - 46,420,004 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera644,364,732 - 44,402,521 (-)NCBICelera
Cytogenetic Map6q16NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16869982   PMID:20236041   PMID:28395323  


Genomics

Comparative Map Data
Dcdc2c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8650,832,407 - 50,907,437 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl650,831,964 - 50,906,439 (-)EnsemblGRCr8
mRatBN7.2645,103,838 - 45,179,040 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl645,061,553 - 45,178,046 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx645,431,392 - 45,469,144 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0645,746,260 - 45,784,008 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0645,183,126 - 45,220,878 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0647,737,814 - 47,812,219 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl647,774,060 - 47,848,075 (-)Ensemblrn6Rnor6.0
Rnor_5.0656,439,766 - 56,513,986 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4646,349,333 - 46,420,004 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera644,364,732 - 44,402,521 (-)NCBICelera
Cytogenetic Map6q16NCBI
DCDC2C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3823,703,575 - 3,848,008 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl23,703,575 - 3,848,008 (+)Ensemblhg38GRCh38
GRCh3723,751,165 - 3,895,598 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3623,728,191 - 3,796,318 (+)NCBIBuild 36Build 36hg18NCBI36
Celera23,759,394 - 3,835,241 (+)NCBICelera
Cytogenetic Map2p25.3NCBI
HuRef23,692,833 - 3,835,372 (+)NCBIHuRef
CHM1_123,680,572 - 3,823,942 (+)NCBICHM1_1
T2T-CHM13v2.023,726,147 - 3,871,300 (+)NCBIT2T-CHM13v2.0
Dcdc2c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391228,487,794 - 28,602,941 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1228,487,794 - 28,602,448 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381228,437,795 - 28,552,942 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1228,437,795 - 28,552,399 (-)Ensemblmm10GRCm38
MGSCv371229,122,660 - 29,233,202 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361229,024,063 - 29,134,605 (-)NCBIMGSCv36mm8
MGSCv361222,522,549 - 22,634,516 (-)NCBIMGSCv36mm8
Celera1229,925,487 - 30,038,216 (-)NCBICelera
Cytogenetic Map12A2NCBI
cM Map1210.94NCBI
Dcdc2c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554873,725,286 - 3,756,698 (-)Ensembl
ChiLan1.0NW_0049554873,698,708 - 3,756,669 (-)NCBIChiLan1.0ChiLan1.0
DCDC2C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212122,655,629 - 122,800,893 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A122,663,162 - 122,804,870 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A3,720,400 - 3,807,658 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A3,638,431 - 3,723,667 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A3,638,431 - 3,778,383 (+)EnsemblpanPan2panpan1.1
DCDC2C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1172,216,402 - 2,310,398 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl172,216,391 - 2,310,174 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha172,202,408 - 2,296,451 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0172,310,689 - 2,404,753 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl172,310,606 - 2,404,529 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1172,195,450 - 2,289,691 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0172,216,381 - 2,310,013 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0172,218,416 - 2,312,512 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Dcdc2c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629247,061,475 - 47,148,326 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365321,816,573 - 1,861,250 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365321,816,573 - 1,866,029 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DCDC2C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3131,095,460 - 131,194,949 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.13131,082,277 - 131,194,726 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23140,287,168 - 140,403,718 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DCDC2C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.114103,746,056 - 103,943,630 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl14103,871,408 - 103,943,501 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660458,350,524 - 8,489,310 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dcdc2c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248465,124,583 - 5,160,333 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248465,123,283 - 5,160,333 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Dcdc2c
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1741,953,874 - 41,993,516 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Dcdc2c
454 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:94
Count of miRNA genes:77
Interacting mature miRNAs:83
Transcripts:ENSRNOT00000010942
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)64451097489510974Rat
8693632Alc27Alcohol consumption QTL 272.20.791drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)64005241156848866Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63902865963457441Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)64095756485957564Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)64515378690153786Rat
8552910Pigfal5Plasma insulin-like growth factor 1 level QTL 54.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)62265388967653889Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63118500276185002Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)64604735391047353Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64451097489510974Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6186868070Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64451097489510974Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)63332884178328841Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)63093763275937632Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)63332884178328841Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63902865986867923Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)61459947363457687Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)61608937261967788Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)64016318385163183Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)62228825767288257Rat

Markers in Region
D6Got55  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2645,132,158 - 45,132,331 (+)MAPPERmRatBN7.2
Rnor_6.0647,765,970 - 47,766,142NCBIRnor6.0
Rnor_5.0656,468,095 - 56,468,267UniSTSRnor5.0
RGSC_v3.4646,373,356 - 46,373,529RGDRGSC3.4
RGSC_v3.4646,373,357 - 46,373,529UniSTSRGSC3.4
Celera644,356,642 - 44,356,814UniSTS
RGSC_v3.1646,376,482 - 46,376,655RGD
RH 2.0 Map6452.5RGD
Cytogenetic Map6q16UniSTS
BF387922  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2645,179,256 - 45,179,422 (+)MAPPERmRatBN7.2
Rnor_6.0647,813,064 - 47,813,229NCBIRnor6.0
Rnor_5.0656,515,189 - 56,515,354UniSTSRnor5.0
RGSC_v3.4646,421,215 - 46,421,380UniSTSRGSC3.4
Celera644,403,732 - 44,403,897UniSTS
RH 3.4 Map6260.01UniSTS
Cytogenetic Map6q16UniSTS


Expression

RNA-SEQ Expression

circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
11 8 10 28 22 1 8 6 1 5 5

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001195807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC125638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK596582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000010942   ⟹   ENSRNOP00000010942
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl650,868,646 - 50,906,439 (-)Ensembl
mRatBN7.2 Ensembl645,140,251 - 45,178,046 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099045   ⟹   ENSRNOP00000080351
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl650,831,964 - 50,906,439 (-)Ensembl
mRatBN7.2 Ensembl645,104,117 - 45,178,046 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000107720   ⟹   ENSRNOP00000093766
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl645,061,553 - 45,178,046 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000108156   ⟹   ENSRNOP00000082312
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl650,832,350 - 50,906,439 (-)Ensembl
mRatBN7.2 Ensembl645,104,117 - 45,178,046 (-)Ensembl
RefSeq Acc Id: NM_001195807   ⟹   NP_001182736
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8650,868,646 - 50,906,439 (-)NCBI
mRatBN7.2645,140,251 - 45,178,046 (-)NCBI
Rnor_6.0647,774,060 - 47,811,853 (-)NCBI
Rnor_5.0656,439,766 - 56,513,986 (-)NCBI
Celera644,364,732 - 44,402,521 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006239956   ⟹   XP_006240018
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8650,836,515 - 50,907,437 (-)NCBI
mRatBN7.2645,108,118 - 45,179,040 (-)NCBI
Rnor_6.0647,741,929 - 47,812,214 (-)NCBI
Rnor_5.0656,439,766 - 56,513,986 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006239957   ⟹   XP_006240019
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8650,868,394 - 50,907,437 (-)NCBI
mRatBN7.2645,134,560 - 45,179,040 (-)NCBI
Rnor_6.0647,771,893 - 47,812,215 (-)NCBI
Rnor_5.0656,439,766 - 56,513,986 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006239958   ⟹   XP_006240020
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8650,832,407 - 50,907,437 (-)NCBI
mRatBN7.2645,104,841 - 45,179,040 (-)NCBI
Rnor_6.0647,737,814 - 47,812,214 (-)NCBI
Rnor_5.0656,439,766 - 56,513,986 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594294   ⟹   XP_017449783
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8650,832,407 - 50,907,437 (-)NCBI
mRatBN7.2645,103,845 - 45,179,040 (-)NCBI
Rnor_6.0647,737,814 - 47,812,218 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594297   ⟹   XP_017449786
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8650,832,407 - 50,907,437 (-)NCBI
mRatBN7.2645,103,852 - 45,179,040 (-)NCBI
Rnor_6.0647,737,814 - 47,812,215 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594300   ⟹   XP_017449789
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8650,836,515 - 50,907,437 (-)NCBI
mRatBN7.2645,108,118 - 45,179,040 (-)NCBI
Rnor_6.0647,741,929 - 47,812,215 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594301   ⟹   XP_017449790
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8650,832,407 - 50,907,437 (-)NCBI
mRatBN7.2645,104,841 - 45,179,040 (-)NCBI
Rnor_6.0647,737,814 - 47,812,215 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039112712   ⟹   XP_038968640
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8650,832,407 - 50,907,437 (-)NCBI
mRatBN7.2645,103,844 - 45,179,040 (-)NCBI
RefSeq Acc Id: XM_039112713   ⟹   XP_038968641
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8650,832,407 - 50,907,437 (-)NCBI
mRatBN7.2645,103,838 - 45,179,040 (-)NCBI
RefSeq Acc Id: XM_039112714   ⟹   XP_038968642
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8650,832,407 - 50,907,437 (-)NCBI
mRatBN7.2645,103,851 - 45,179,040 (-)NCBI
RefSeq Acc Id: XM_039112715   ⟹   XP_038968643
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8650,832,407 - 50,906,415 (-)NCBI
mRatBN7.2645,103,844 - 45,179,040 (-)NCBI
RefSeq Acc Id: XM_039112716   ⟹   XP_038968644
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8650,832,407 - 50,906,063 (-)NCBI
mRatBN7.2645,103,844 - 45,177,666 (-)NCBI
RefSeq Acc Id: XM_039112717   ⟹   XP_038968645
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8650,836,515 - 50,907,437 (-)NCBI
mRatBN7.2645,108,118 - 45,179,040 (-)NCBI
RefSeq Acc Id: XM_039112718   ⟹   XP_038968646
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8650,836,515 - 50,907,437 (-)NCBI
mRatBN7.2645,108,175 - 45,179,040 (-)NCBI
RefSeq Acc Id: XM_039112719   ⟹   XP_038968647
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8650,836,515 - 50,907,437 (-)NCBI
mRatBN7.2645,108,118 - 45,179,040 (-)NCBI
RefSeq Acc Id: XM_039112721   ⟹   XP_038968649
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8650,862,957 - 50,907,437 (-)NCBI
mRatBN7.2645,134,560 - 45,179,040 (-)NCBI
RefSeq Acc Id: XM_063262307   ⟹   XP_063118377
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8650,832,407 - 50,907,437 (-)NCBI
RefSeq Acc Id: NP_001182736   ⟸   NM_001195807
- UniProtKB: D3Z9D4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240020   ⟸   XM_006239958
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: XP_006240018   ⟸   XM_006239956
- Peptide Label: isoform X12
- UniProtKB: A0A8I5ZSW5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240019   ⟸   XM_006239957
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_017449783   ⟸   XM_017594294
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017449786   ⟸   XM_017594297
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017449790   ⟸   XM_017594301
- Peptide Label: isoform X11
- UniProtKB: A0A8I5ZV25 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449789   ⟸   XM_017594300
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_038968641   ⟸   XM_039112713
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038968643   ⟸   XM_039112715
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038968640   ⟸   XM_039112712
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038968644   ⟸   XM_039112716
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038968642   ⟸   XM_039112714
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038968647   ⟸   XM_039112719
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038968645   ⟸   XM_039112717
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038968646   ⟸   XM_039112718
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038968649   ⟸   XM_039112721
- Peptide Label: isoform X16
Ensembl Acc Id: ENSRNOP00000082312   ⟸   ENSRNOT00000108156
Ensembl Acc Id: ENSRNOP00000010942   ⟸   ENSRNOT00000010942
Ensembl Acc Id: ENSRNOP00000080351   ⟸   ENSRNOT00000099045
Ensembl Acc Id: ENSRNOP00000093766   ⟸   ENSRNOT00000107720
RefSeq Acc Id: XP_063118377   ⟸   XM_063262307
- Peptide Label: isoform X15
Protein Domains
Doublecortin

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694530
Promoter ID:EPDNEW_R5053
Type:single initiation site
Name:Allc_2
Description:allantoicase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R5054  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0647,811,866 - 47,811,926EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1559651 AgrOrtholog
BioCyc Gene G2FUF-37970 BioCyc
Ensembl Genes ENSRNOG00000008299 Ensembl
  ENSRNOG00000067604 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000010942 ENTREZGENE
  ENSRNOT00000010942.8 UniProtKB/TrEMBL
  ENSRNOT00000099045 ENTREZGENE
  ENSRNOT00000099045.2 UniProtKB/TrEMBL
  ENSRNOT00000108156 ENTREZGENE
  ENSRNOT00000108156.2 UniProtKB/TrEMBL
Gene3D-CATH 3.10.20.230 UniProtKB/TrEMBL
InterPro DCX UniProtKB/TrEMBL
  Doublecortin_dom_sf UniProtKB/TrEMBL
KEGG Report rno:500637 UniProtKB/TrEMBL
NCBI Gene 500637 ENTREZGENE
PANTHER DOUBLECORTIN DOMAIN CONTAINING 2 UniProtKB/TrEMBL
  DOUBLECORTIN DOMAIN-CONTAINING PROTEIN 2C UniProtKB/TrEMBL
Pfam DCX UniProtKB/TrEMBL
PhenoGen Dcdc2c PhenoGen
PROSITE PS50309 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000008299 RatGTEx
  ENSRNOG00000067604 RatGTEx
SMART DCX UniProtKB/TrEMBL
Superfamily-SCOP SSF89837 UniProtKB/TrEMBL
UniProt A0A8I5ZSW5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZV25 ENTREZGENE, UniProtKB/TrEMBL
  D3Z9D4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 RGD1559651  similar to Ab2-162   RGD1559651_predicted  similar to Ab2-162 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1559651_predicted  similar to Ab2-162 (predicted)  LOC500637  similar to Ab2-162  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC500637  similar to Ab2-162      Symbol and Name status set to provisional 70820 PROVISIONAL